Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008737

Physical Location & Seq

Genomic Coordinates Forward (+)

63235727 .. 63237289

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0459200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGATGAATGCCGAGACAGCGGAGGGGATGCCGCCGTCACGCTCCTCGTTCTCTGAAATGGTTCGTCGAAAGTTTCATCCTTCGTCGCTGCTGTCCGCCGCGGCAACTACCGGACCGGGTTCACTCAAACCAAGCGAGCTCCTCCCATCACATCACGAAGAAAAACAATGGTGTAGGGAAATTATGCCTGCTCTTGCAATTCACAAAGAGGTTCAAGCTGTGCATAATCTCACCGTTTTCATCATCGAGGGTCGACCAATCAAGCTTCAGATTTGGGACACTGGATTGAATTTTGCAGGTTTCTATATTATCGATGACATTCTATCTCTTGTTTTATTCCCACCTAAAGGACAAGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042762 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

121

Amino Acids

13.44

Weight (kDa)

6.19

Isoelectric Point (pI)

64.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73730 AT1G73730
fragaria_vesca	FvH4_3g43580 FvH4_3g43580
malus_domestica	MD03G1020800.v1.1 MD11G1022400.v1.1
prunus_persica	Prupe.6G018200_v2.0.a1 Prupe.6G018200_v2.0.a1
pyrus_communis	pycom03g01780 pycom11g01800
rosa_chinensis	RchiOBHm_Chr5g0078151
rosa_laevigata	RLG00000036758
rosa_multiflora	Rmu_sc0018349.1_g000004 Rmu_sc0018349.1_g000007
rosa_roxburghii	Rroxscaffold_1G00003980
rosa_rugosa	Rorug05G0459100 Rorug05G0459200 Rorug05G0459300
rosa_samantha	Rh5AG513600 Rh5BG536600 Rh5CG560000 Rh5DG548200
rosa_wichuraiana	Rw5G047660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	256
AccII	CGCG	1 cut(s)	104
AciI	CCGC	5 cut(s)	23, 35, 99, 102, 104
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	218, 292, 362
AluBI	AGCT	3 cut(s)	142, 221, 268
AluI	AGCT	3 cut(s)	142, 221, 268
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	4 cut(s)	35, 92, 102, 105
BlsI	GCNGC	4 cut(s)	36, 93, 103, 106
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	289
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	36, 79
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	2 cut(s)	37, 134
BseXI	GCAGC	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	104
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	114, 119
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	144
BspACI	CCGC	5 cut(s)	23, 35, 99, 102, 104
BspDI	ATCGAT	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	104
BspMI	ACCTGC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	140, 192
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	36, 79
BstFNI	CGCG	1 cut(s)	104
BstMAI	GTCTC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 20
BstSCI	CCNGG	1 cut(s)	118
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	315
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	36, 79
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	2 cut(s)	140, 192
Cfr13I	GGNCC	1 cut(s)	116
Cfr42I	CCGCGG	1 cut(s)	105
ClaI	ATCGAT	1 cut(s)	315
CpoI	CGGWCCG	1 cut(s)	116
CspI	CGGWCCG	1 cut(s)	116
CviJI	RGCY	3 cut(s)	142, 221, 268
CviKI_1	RGCY	3 cut(s)	142, 221, 268
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	144
FaiI	YATR	3 cut(s)	188, 228, 309
FaqI	GGGAC	1 cut(s)	293
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	35, 92, 102, 105
FokI	GGATG	2 cut(s)	43, 66
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	4 cut(s)	35, 92, 102, 105
GluI	GCNGC	4 cut(s)	35, 92, 102, 105
HapII	CCGG	2 cut(s)	114, 119
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	266
HpaII	CCGG	2 cut(s)	114, 119
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	2 cut(s)	125, 257
Hpy188I	TCNGA	2 cut(s)	58, 273
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	125, 257
Hpy99I	CGWCG	2 cut(s)	72, 91
HpyAV	CCTTC	1 cut(s)	93
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	200, 226, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 20
KspI	CCGCGG	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	50, 147
LpnPI	CCDG	5 cut(s)	127, 132, 204, 270, 285
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	3 cut(s)	183, 201, 292
MnlI	CCTC	5 cut(s)	19, 58, 155, 205, 244
MroXI	GAANNNNTTC	1 cut(s)	63
MspA1I	CMGCKG	2 cut(s)	23, 104
MspI	CCGG	2 cut(s)	114, 119
MspR9I	CCNGG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	16
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	11, 20
NciI	CCSGG	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	63
PkrI	GCNGC	4 cut(s)	36, 93, 103, 106
Psp124BI	GAGCTC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	116
Rsr2I	CGGWCCG	1 cut(s)	116
RsrII	CGGWCCG	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	144
SacII	CCGCGG	1 cut(s)	105
SalI	GTCGAC	1 cut(s)	255
SatI	GCNGC	4 cut(s)	35, 92, 102, 105
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	6 cut(s)	144, 216, 223, 270, 304, 349
SfaNI	GCATC	1 cut(s)	21
Sfr303I	CCGCGG	1 cut(s)	105
SgrBI	CCGCGG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	116
Sse9I	AATT	3 cut(s)	183, 201, 292
SsiI	CCGC	5 cut(s)	23, 35, 99, 102, 104
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	4 cut(s)	70, 249, 256, 315
TasI	AATT	3 cut(s)	183, 201, 292
TauI	GCSGC	3 cut(s)	37, 104, 107
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	3 cut(s)	23, 68, 232
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.