Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007962

Physical Location & Seq

Genomic Coordinates Reverse (-)

38475592 .. 38476278

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0241400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCATGGTTGTGTTGATAGGATGCTTCAATTGCCACTCACCCAACAATCCCTAGCCCAAGAGAAGCATGAGAACATGGTTACAGAGCTATTAGATGGATCTCTCAGTCTCTTGGATGTTTGTAGCACTGCTAAGGATGCCCTGTCGCAAACCAAGGCCTGCATACAAGATCTTCAATCTATCATTCGAAGAAGGCGTGCAGAAGAATCTGGAGTACTAACAACTGAGGTTAGGAAATACTTGACCTCCAGTAAGACGATTAAAAAGGTACTCCACAAGGCTTTGGAGAACCTGAAGGTAACAGCAGACAGATCCACTTTCTCTTCCCTCCACAGGCACCAAGACGCTATCACCATTGTTAGCAAGTTGAGAGACGTTAAAGCAGTCACAGTCACCGTGTTTGAATCAGTGCTGTCCTTCATCTCTGGGCCAAAGCCCAAGCCTAGCAGCTGGTCATTGGTTTCCAAGATAGTACAATCAAAGAAAGTAGCTTGTGAGGAAGAAGCAAAAGTAAATGAATTTGCAGACGTGGATGCTGCATTAAAGTCACTCAAGAGTGCAGAGAATGCACAGAACCAGCTTAACAATCTGGAGTCGTGCATTCAAAACCTAGAAGAAGGACTCGAGTGCCTATTTAGGCTCTTAATCAAAACTAGAGTCTCCCTTCTCAACATCCTAAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030054 GO:0030865 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0040007 GO:0043015 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0050896 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051704 GO:0051707 GO:0055044 GO:0065003 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

228

Amino Acids

25.39

Weight (kDa)

8.7

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPS1	PF03087	2 - 225	5.2e-79	Protein BPS1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53760 AT3G53760 AT3G53760
fragaria_vesca	FvH4_2g25810 FvH4_2g25810 FvH4_2g25810 FvH4_2g25810 FvH4_2g25810
malus_domestica	MD03G1288900.v1.1
prunus_persica	Prupe.8G262200_v2.0.a1 Prupe.8G262200_v2.0.a1
pyrus_communis	pycom03g22900 pycom11g27030
rosa_chinensis	RchiOBHm_Chr6g0294121
rosa_laevigata	RLG00000011897
rosa_multiflora	Rmu_sc0005037.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173630
rosa_rugosa	Rorug06G0241400 Rorug06G0241500 Rorug06G0241600 Rorug06G0241700
rosa_samantha	Rh6AG354000 Rh6DG354800
rosa_wichuraiana	Rw6G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AclWI	GGATC	2 cut(s)	106, 306
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	3 cut(s)	216, 270, 474
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	4 cut(s)	29, 176, 404, 605
AjiI	CACGTC	1 cut(s)	529
AluBI	AGCT	4 cut(s)	88, 450, 491, 580
AluI	AGCT	4 cut(s)	88, 450, 491, 580
Alw26I	GTCTC	3 cut(s)	113, 366, 664
AlwI	GGATC	2 cut(s)	106, 306
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	2 cut(s)	156, 428
ApeKI	GCWGC	2 cut(s)	447, 536
ApoI	RAATTY	1 cut(s)	518
ArsI	GACNNNNNNTTYG	2 cut(s)	642, 674
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	3 cut(s)	31, 343, 385
AsuII	TTCGAA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	459, 523
BccI	CCATC	1 cut(s)	89
BcoDI	GTCTC	3 cut(s)	113, 366, 664
BfaI	CTAG	4 cut(s)	53, 444, 611, 654
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	448, 537
BlsI	GCNGC	2 cut(s)	449, 538
BmcAI	AGTACT	1 cut(s)	216
BmeT110I	CYCGRG	1 cut(s)	623
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	338
BmsI	GCATC	3 cut(s)	12, 127, 523
BpmI	CTGGAG	3 cut(s)	231, 232, 611
Bpu10I	CCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	2 cut(s)	249, 682
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	5 cut(s)	27, 121, 142, 538, 672
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	118, 216
BseNI	ACTGG	2 cut(s)	249, 682
BseXI	GCAGC	2 cut(s)	459, 523
BsgI	GTGCAG	2 cut(s)	219, 579
BshFI	GGCC	2 cut(s)	158, 430
BshNI	GGYRCC	1 cut(s)	336
BsiHKCI	CYCGRG	1 cut(s)	623
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	3 cut(s)	113, 366, 664
BsmBI	CGTCTC	1 cut(s)	366
BsmI	GAATGC	2 cut(s)	571, 600
BsnI	GGCC	2 cut(s)	158, 430
BsoBI	CYCGRG	1 cut(s)	623
Bsp119I	TTCGAA	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	98, 169, 311
BspANI	GGCC	2 cut(s)	158, 430
BspCNI	CTCAG	2 cut(s)	117, 217
BspLI	GGNNCC	1 cut(s)	338
BspPI	GGATC	2 cut(s)	106, 306
BspT104I	TTCGAA	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	249, 682
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	98, 169, 311
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	391, 397
Bst6I	CTCTTC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	160, 198
BstDEI	CTNAG	3 cut(s)	104, 132, 225
BstF5I	GGATG	5 cut(s)	27, 121, 142, 538, 672
BstKTI	GATC	3 cut(s)	101, 172, 314
BstMAI	GTCTC	3 cut(s)	113, 366, 664
BstMBI	GATC	3 cut(s)	98, 169, 311
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 137, 566
BstV1I	GCAGC	2 cut(s)	459, 523
BstX2I	RGATCY	3 cut(s)	98, 169, 311
BstYI	RGATCY	3 cut(s)	98, 169, 311
BsuRI	GGCC	2 cut(s)	158, 430
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	5 cut(s)	27, 121, 142, 538, 672
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	126, 414
Cac8I	GCNNGC	2 cut(s)	160, 198
Cfr13I	GGNCC	1 cut(s)	428
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	3 cut(s)	215, 269, 473
CviAII	CATG	3 cut(s)	5, 68, 76
CviQI	GTAC	3 cut(s)	215, 269, 473
DdeI	CTNAG	3 cut(s)	104, 132, 225
DpnI	GATC	3 cut(s)	100, 171, 313
DpnII	GATC	3 cut(s)	98, 169, 311
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	3 cut(s)	8, 71, 79
FaiI	YATR	4 cut(s)	6, 69, 77, 164
FatI	CATG	3 cut(s)	4, 67, 75
Fnu4HI	GCNGC	2 cut(s)	448, 537
FokI	GGATG	5 cut(s)	34, 128, 149, 545, 659
Fsp4HI	GCNGC	2 cut(s)	448, 537
FspBI	CTAG	4 cut(s)	53, 444, 611, 654
GluI	GCNGC	2 cut(s)	448, 537
GsuI	CTGGAG	3 cut(s)	231, 232, 611
HaeIII	GGCC	2 cut(s)	158, 430
HgaI	GACGC	1 cut(s)	353
Hin1II	CATG	3 cut(s)	8, 71, 79
HinfI	GANTC	5 cut(s)	206, 404, 593, 621, 657
HphI	GGTGA	3 cut(s)	31, 343, 385
Hpy188III	TCNNGA	3 cut(s)	210, 553, 590
HpyAV	CCTTC	5 cut(s)	186, 289, 427, 611, 674
HpyCH4III	ACNGT	2 cut(s)	391, 397
HpyCH4IV	ACGT	2 cut(s)	375, 528
HpyCH4V	TGCA	8 cut(s)	4, 162, 200, 524, 539, 560, 569, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 137, 566
HpyF3I	CTNAG	3 cut(s)	104, 132, 225
HpySE526I	ACGT	2 cut(s)	375, 528
Hsp92II	CATG	3 cut(s)	8, 71, 79
Kzo9I	GATC	3 cut(s)	98, 169, 311
Lsp1109I	GCAGC	2 cut(s)	459, 523
LweI	GCATC	3 cut(s)	12, 127, 523
MaeI	CTAG	4 cut(s)	53, 444, 611, 654
MaeII	ACGT	2 cut(s)	375, 528
MaeIII	GTNAC	5 cut(s)	79, 298, 385, 391, 546
MalI	GATC	3 cut(s)	100, 171, 313
MboI	GATC	3 cut(s)	98, 169, 311
MboII	GAAGA	6 cut(s)	164, 201, 215, 315, 512, 626
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	3 cut(s)	98, 169, 311
MluCI	AATT	2 cut(s)	29, 518
MlyI	GAGTC	3 cut(s)	602, 615, 666
MnlI	CCTC	4 cut(s)	220, 256, 338, 490
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	261, 378, 542, 582, 644
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	450
MunI	CAATTG	1 cut(s)	29
Mva1269I	GAATGC	2 cut(s)	571, 600
MwoI	GCNNNNNNNGC	3 cut(s)	31, 137, 566
NdeII	GATC	3 cut(s)	98, 169, 311
NlaIII	CATG	3 cut(s)	8, 71, 79
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	3 cut(s)	385, 391, 546
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	623
PceI	AGGCCT	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PctI	GAATGC	2 cut(s)	571, 600
PfeI	GAWTC	2 cut(s)	206, 404
PkrI	GCNGC	2 cut(s)	449, 538
PleI	GAGTC	3 cut(s)	601, 615, 665
PpsI	GAGTC	3 cut(s)	601, 615, 665
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	428
PspXI	VCTCGAGB	1 cut(s)	623
PsuI	RGATCY	3 cut(s)	98, 169, 311
PvuII	CAGCTG	1 cut(s)	450
RsaI	GTAC	3 cut(s)	216, 270, 474
RsaNI	GTAC	3 cut(s)	215, 269, 473
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	5 cut(s)	261, 378, 542, 582, 644
SatI	GCNGC	2 cut(s)	448, 537
Sau3AI	GATC	3 cut(s)	98, 169, 311
Sau96I	GGNCC	1 cut(s)	428
ScaI	AGTACT	1 cut(s)	216
SchI	GAGTC	3 cut(s)	602, 615, 666
SfaNI	GCATC	3 cut(s)	12, 127, 523
Sfr274I	CTCGAG	1 cut(s)	623
SfuI	TTCGAA	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	551, 623
SmoI	CTYRAG	2 cut(s)	551, 623
Sse9I	AATT	2 cut(s)	29, 518
SseBI	AGGCCT	1 cut(s)	158
SspMI	CTAG	4 cut(s)	53, 444, 611, 654
StuI	AGGCCT	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	391, 397
TaiI	ACGT	2 cut(s)	378, 531
TaqI	TCGA	2 cut(s)	187, 624
TasI	AATT	2 cut(s)	29, 518
TatI	WGTACW	2 cut(s)	214, 472
TfiI	GAWTC	2 cut(s)	206, 404
Tru1I	TTAA	5 cut(s)	261, 378, 542, 582, 644
Tru9I	TTAA	5 cut(s)	261, 378, 542, 582, 644
TscAI	CASTG	2 cut(s)	133, 414
TseFI	GTSAC	3 cut(s)	385, 391, 546
TseI	GCWGC	2 cut(s)	447, 536
Tsp45I	GTSAC	3 cut(s)	385, 391, 546
TspDTI	ATGAA	2 cut(s)	409, 531
TspRI	CASTG	2 cut(s)	133, 414
XapI	RAATTY	1 cut(s)	518
XhoI	CTCGAG	1 cut(s)	623
XspI	CTAG	4 cut(s)	53, 444, 611, 654
ZrmI	AGTACT	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.