Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007962

Physical Location & Seq

Genomic Coordinates Reverse (-)

38503371 .. 38503943

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0241600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTTTGCTGCAAACAAAGGAATGCACACATTAACTTCGATCGATTATGCGCAGAAGACAGGGGAGTTGACATGAGCTTTATGAGTGAGGTTTCAAAATACCTTACCTGTAGGAAGGATGTCAAGAAGGCAATCAACACAGCCTCAAAGCTCAGAGAAAGTAAGAGCACAGACAAAACTCATGAGACTCCAGCCATTGTCAAGATGTTGAAAGAGTTAGATGCAGTCACCTCTACTGTTTTTGAATCCTTGTTTTCCTTTATAGCTAGTTCAAATTTGAAATCAAAGTCAAGCACTTGGTCATTAGTTTCAAAGCTGGTGCAGCCCAGAAAAGTAGCATGTGAAGGTGAAGAAGTCACAAAAACGAATGAGCTTGAGAAGGTGGATGCTGCATTGCACTTGCTCATGAGTCACAAGACTAAAGCATCTGATAACACAATGCAAGTTGATTATGTGCAAAAAAATTTAAAGGAATTCGAGATCAACATTCAAGATATTGAAGAACGATTTGAGTGCCTCTTTAGGCGCTTAATCAAAGCCAGAGTTTCCCTTCTCAACATATTCAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030054 GO:0030865 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0040007 GO:0043015 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0050896 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051704 GO:0051707 GO:0055044 GO:0065003 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

190

Amino Acids

21.76

Weight (kDa)

8.85

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPS1	PF03087	22 - 187	2.8e-42	Protein BPS1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53760 AT3G53760 AT3G53760
fragaria_vesca	FvH4_2g25810 FvH4_2g25810 FvH4_2g25810 FvH4_2g25810 FvH4_2g25810
malus_domestica	MD03G1288900.v1.1
prunus_persica	Prupe.8G262200_v2.0.a1 Prupe.8G262200_v2.0.a1
pyrus_communis	pycom03g22900 pycom11g27030
rosa_chinensis	RchiOBHm_Chr6g0294121
rosa_laevigata	RLG00000011897
rosa_multiflora	Rmu_sc0005037.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173630
rosa_rugosa	Rorug06G0241400 Rorug06G0241500 Rorug06G0241600 Rorug06G0241700
rosa_samantha	Rh6AG354000 Rh6DG354800
rosa_wichuraiana	Rw6G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	52
AcsI	RAATTY	3 cut(s)	274, 463, 473
AgsI	TTSAA	9 cut(s)	96, 211, 245, 273, 280, 312, 491, 500, 565
AluBI	AGCT	5 cut(s)	78, 151, 266, 316, 373
AluI	AGCT	5 cut(s)	78, 151, 266, 316, 373
Alw21I	GWGCWC	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	179
ApeKI	GCWGC	3 cut(s)	9, 322, 389
ApoI	RAATTY	3 cut(s)	274, 463, 473
AspLEI	GCGC	2 cut(s)	53, 528
AsuHPI	GGTGA	2 cut(s)	220, 359
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	334, 376
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	529
BisI	GCNGC	3 cut(s)	10, 323, 390
BlsI	GCNGC	3 cut(s)	11, 324, 391
BmsI	GCATC	3 cut(s)	211, 376, 434
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	392
BseCI	ATCGAT	1 cut(s)	43
BseGI	GGATG	2 cut(s)	124, 391
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	334, 376
BsgI	GTGCAG	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	43
BshVI	ATCGAT	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	40, 480
BspCNI	CTCAG	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	43
BspHI	TCATGA	2 cut(s)	181, 405
BsrDI	GCAATG	1 cut(s)	392
BssMI	GATC	2 cut(s)	40, 480
Bst4CI	ACNGT	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	124, 391
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	2 cut(s)	53, 528
BstKTI	GATC	2 cut(s)	43, 483
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	2 cut(s)	40, 480
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	334, 376
BstV2I	GAAGAC	1 cut(s)	63
Bsu15I	ATCGAT	1 cut(s)	43
BsuTUI	ATCGAT	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	124, 391
CciI	TCATGA	2 cut(s)	181, 405
CfoI	GCGC	2 cut(s)	53, 528
ClaI	ATCGAT	1 cut(s)	43
CviAII	CATG	4 cut(s)	73, 182, 339, 406
CviJI	RGCY	9 cut(s)	78, 143, 151, 194, 266, 316, 325, 373, 539
CviKI_1	RGCY	9 cut(s)	78, 143, 151, 194, 266, 316, 325, 373, 539
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	42, 482
DpnII	GATC	2 cut(s)	40, 480
DraI	TTTAAA	1 cut(s)	468
EcoRI	GAATTC	1 cut(s)	473
FaeI	CATG	4 cut(s)	76, 185, 342, 409
FaiI	YATR	9 cut(s)	49, 74, 83, 183, 263, 340, 407, 453, 560
FatI	CATG	4 cut(s)	72, 181, 338, 405
Fnu4HI	GCNGC	3 cut(s)	10, 323, 390
FokI	GGATG	2 cut(s)	131, 398
Fsp4HI	GCNGC	3 cut(s)	10, 323, 390
FspBI	CTAG	1 cut(s)	267
FspI	TGCGCA	1 cut(s)	52
GlaI	GCGC	2 cut(s)	52, 527
GluI	GCNGC	3 cut(s)	10, 323, 390
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	529
HhaI	GCGC	2 cut(s)	53, 528
Hin1II	CATG	4 cut(s)	76, 185, 342, 409
Hin6I	GCGC	2 cut(s)	51, 526
HinP1I	GCGC	2 cut(s)	51, 526
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	3 cut(s)	187, 245, 409
HphI	GGTGA	2 cut(s)	220, 359
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	155, 430
Hpy188III	TCNNGA	6 cut(s)	124, 182, 202, 406, 478, 491
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	5 cut(s)	109, 121, 338, 373, 560
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	8 cut(s)	12, 26, 224, 322, 392, 397, 442, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	4 cut(s)	76, 185, 342, 409
HspAI	GCGC	2 cut(s)	51, 526
Kzo9I	GATC	2 cut(s)	40, 480
LpnPI	CCDG	6 cut(s)	46, 121, 204, 302, 340, 553
Lsp1109I	GCAGC	2 cut(s)	334, 376
LweI	GCATC	3 cut(s)	211, 376, 434
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	3 cut(s)	226, 355, 410
MalI	GATC	2 cut(s)	42, 482
MboI	GATC	2 cut(s)	40, 480
MboII	GAAGA	3 cut(s)	68, 362, 512
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	4 cut(s)	274, 463, 473, 568
MlyI	GAGTC	2 cut(s)	181, 418
MnlI	CCTC	4 cut(s)	82, 154, 241, 527
MseI	TTAA	3 cut(s)	33, 467, 530
Mva1269I	GAATGC	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	2 cut(s)	40, 480
NlaIII	CATG	4 cut(s)	76, 185, 342, 409
NmuCI	GTSAC	3 cut(s)	226, 355, 410
NsbI	TGCGCA	1 cut(s)	52
NspI	RCATGY	1 cut(s)	342
PagI	TCATGA	2 cut(s)	181, 405
PctI	GAATGC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	11, 324, 391
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	2 cut(s)	181, 417
PpsI	GAGTC	2 cut(s)	181, 417
PvuI	CGATCG	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	33, 467, 530
SatI	GCNGC	3 cut(s)	10, 323, 390
Sau3AI	GATC	2 cut(s)	40, 480
SchI	GAGTC	2 cut(s)	181, 418
SduI	GDGCHC	1 cut(s)	170
SfaNI	GCATC	3 cut(s)	211, 376, 434
SfcI	CTRYAG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	274, 463, 473, 568
SspMI	CTAG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	39, 43, 477
TasI	AATT	4 cut(s)	274, 463, 473, 568
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	3 cut(s)	33, 467, 530
Tru9I	TTAA	3 cut(s)	33, 467, 530
TseFI	GTSAC	3 cut(s)	226, 355, 410
TseI	GCWGC	3 cut(s)	9, 322, 389
Tsp45I	GTSAC	3 cut(s)	226, 355, 410
XapI	RAATTY	3 cut(s)	274, 463, 473
XceI	RCATGY	1 cut(s)	342
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.