Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007962

Physical Location & Seq

Genomic Coordinates Reverse (-)

38484893 .. 38485801

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0241500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTGCAGCTTCTCCTTTAAACCCTAAAGCCAACTACCATATTCGATCTATCAGCTTGCCTTCAAAACCGCACCCGCTATTTCAACAATGTGAAGATTATTTGTTGAGAATAATAGCTTCTTCTGATGCCAATTCCTCCTCATCATCAGCCATAAGCAACAAGTTGAGCTGCCTTCTCGATTTGCACAACTGTGTGAATGAGTTGTTTCAGTTGCCCCTAACCCAAGAAGCCTTTGTTCGGGAGCGAAATGAGAAATGGGTCGATGAGCTCTTGGATAGATCCCTCAGGCTCCTAGATGTGTGCACAGCAGCCAAGGATGCCTTGATACACACTAAGGAATGCGCACGCGAAATTCAATCCACCATGCGCAGACGAAGGGGAGGCCAAAGCGGGTTCACAAACGAGGTCAAGAAGTACTTTGCCTCAAGAAAAGTGGTGAAGAAAGCAATCTGCAAGGCCCTTGTGACTTTGAAGAGTTGCGAGAAAAAGTCCAGCTTCTCTTCCACCAACAAAGACAACGTAGCTGTGGCTTTGGTTAGTGTATTGAGGGAGGTTGAAGCAGTTTCTCTCACGGTGTTCGAGTCCCTCTTGTCATTCATCTCCGGATCAAAGGCACAATCGAAGATGAGGGGCTGGTCTTTCGTTTCCAAGATAATGCTCAACAAAAAAGTTGCTTGTGACGAAGAGAAATCGGAAGTAAACGAATTTGCTGATGTGGATGCTGCATTAAGCTGCCTTGTTGGCCAAGAAACAAGCAAATCAGACAACATCTCCTGCAACGAGGATGTGCAAAGCGATCTGCAACAATTGGAATCATGCAGTCAAGATCTAGAAGAAGGACTCGATTGTCTGTTCCGGCGACTAATTAAGAATAGAGTTTCCCTTCTCAACACCCTTAGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030054 GO:0030865 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0040007 GO:0043015 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0050896 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051704 GO:0051707 GO:0055044 GO:0065003 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

302

Amino Acids

33.62

Weight (kDa)

8.21

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPS1	PF03087	55 - 298	2.7e-85	Protein BPS1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53760 AT3G53760 AT3G53760
fragaria_vesca	FvH4_2g25810 FvH4_2g25810 FvH4_2g25810 FvH4_2g25810 FvH4_2g25810
malus_domestica	MD03G1288900.v1.1
prunus_persica	Prupe.8G262200_v2.0.a1 Prupe.8G262200_v2.0.a1
pyrus_communis	pycom03g22900 pycom11g27030
rosa_chinensis	RchiOBHm_Chr6g0294121
rosa_laevigata	RLG00000011897
rosa_multiflora	Rmu_sc0005037.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173630
rosa_rugosa	Rorug06G0241400 Rorug06G0241500 Rorug06G0241600 Rorug06G0241700
rosa_samantha	Rh6AG354000 Rh6DG354800
rosa_wichuraiana	Rw6G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	849
Acc16I	TGCGCA	2 cut(s)	346, 371
AccII	CGCG	1 cut(s)	351
AccIII	TCCGGA	1 cut(s)	605
AciI	CCGC	3 cut(s)	71, 77, 393
AclWI	GGATC	2 cut(s)	276, 616
AcoI	YGGCCR	1 cut(s)	745
AcsI	RAATTY	2 cut(s)	354, 707
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	5 cut(s)	66, 86, 359, 475, 560
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	8 cut(s)	11, 57, 119, 171, 271, 498, 527, 735
AluI	AGCT	8 cut(s)	11, 57, 119, 171, 271, 498, 527, 735
Alw21I	GWGCWC	2 cut(s)	273, 308
Alw44I	GTGCAC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	276, 616
Aor13HI	TCCGGA	1 cut(s)	605
AoxI	GGCC	3 cut(s)	385, 459, 745
ApaLI	GTGCAC	1 cut(s)	304
ApeKI	GCWGC	6 cut(s)	5, 8, 171, 311, 725, 735
ApoI	RAATTY	2 cut(s)	354, 707
AspLEI	GCGC	2 cut(s)	347, 372
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	451
AxyI	CCTNAGG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	747
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	2 cut(s)	273, 308
BbvI	GCAGC	5 cut(s)	20, 158, 323, 712, 722
BfaI	CTAG	2 cut(s)	296, 833
BfmI	CTRYAG	1 cut(s)	6
BglI	GCCNNNNNGGC	1 cut(s)	744
BglII	AGATCT	1 cut(s)	829
BisI	GCNGC	6 cut(s)	6, 9, 172, 312, 726, 736
BlsI	GCNGC	6 cut(s)	7, 10, 173, 313, 727, 737
BmcAI	AGTACT	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	293
BmsI	GCATC	3 cut(s)	118, 310, 712
BpuEI	CTTGAG	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	758, 788
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse21I	CCTNAGG	1 cut(s)	287
BseAI	TCCGGA	1 cut(s)	605
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	3 cut(s)	325, 727, 793
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	5 cut(s)	20, 158, 323, 712, 722
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	387, 461, 747
BsiHKAI	GWGCWC	2 cut(s)	273, 308
BsiSI	CCGG	2 cut(s)	606, 859
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	387, 461, 747
Bsp1286I	GDGCHC	2 cut(s)	273, 308
Bsp13I	TCCGGA	1 cut(s)	605
Bsp143I	GATC	5 cut(s)	47, 281, 608, 799, 829
BspACI	CCGC	3 cut(s)	71, 77, 393
BspANI	GGCC	3 cut(s)	387, 461, 747
BspCNI	CTCAG	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	605
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	293
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	2 cut(s)	276, 616
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	5 cut(s)	47, 281, 608, 799, 829
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	194, 577
Bst6I	CTCTTC	3 cut(s)	470, 508, 681
BstC8I	GCNNGC	2 cut(s)	59, 349
BstDEI	CTNAG	3 cut(s)	287, 336, 899
BstF5I	GGATG	3 cut(s)	325, 727, 793
BstFNI	CGCG	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	347, 372
BstKTI	GATC	5 cut(s)	50, 284, 611, 802, 832
BstMBI	GATC	5 cut(s)	47, 281, 608, 799, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 744
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	308
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	5 cut(s)	20, 158, 323, 712, 722
BstX2I	RGATCY	2 cut(s)	281, 829
BstYI	RGATCY	2 cut(s)	281, 829
Bsu36I	CCTNAGG	1 cut(s)	287
BsuRI	GGCC	3 cut(s)	387, 461, 747
BtsCI	GGATG	3 cut(s)	325, 727, 793
Cac8I	GCNNGC	2 cut(s)	59, 349
CfoI	GCGC	2 cut(s)	347, 372
Cfr13I	GGNCC	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	418
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	2 cut(s)	367, 819
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	287, 336, 899
DpnI	GATC	5 cut(s)	49, 283, 610, 801, 831
DpnII	GATC	5 cut(s)	47, 281, 608, 799, 829
DraI	TTTAAA	1 cut(s)	21
DrdI	GACNNNNNNGTC	1 cut(s)	849
DseDI	GACNNNNNNGTC	1 cut(s)	849
EaeI	YGGCCR	1 cut(s)	745
Eam1104I	CTCTTC	3 cut(s)	470, 508, 681
EarI	CTCTTC	3 cut(s)	470, 508, 681
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	271
Eco81I	CCTNAGG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	370, 822
FaiI	YATR	4 cut(s)	42, 155, 368, 820
FalI	AAGNNNNNCTT	6 cut(s)	308, 340, 404, 436, 482, 514
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	2 cut(s)	366, 818
FauI	CCCGC	2 cut(s)	84, 386
Fnu4HI	GCNGC	6 cut(s)	6, 9, 172, 312, 726, 736
FokI	GGATG	3 cut(s)	332, 734, 800
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	6 cut(s)	6, 9, 172, 312, 726, 736
FspAI	RTGCGCAY	1 cut(s)	346
FspBI	CTAG	2 cut(s)	296, 833
FspI	TGCGCA	2 cut(s)	346, 371
GlaI	GCGC	2 cut(s)	346, 371
GluI	GCNGC	6 cut(s)	6, 9, 172, 312, 726, 736
HaeIII	GGCC	3 cut(s)	387, 461, 747
HapII	CCGG	2 cut(s)	606, 859
HhaI	GCGC	2 cut(s)	347, 372
Hin1II	CATG	2 cut(s)	370, 822
Hin6I	GCGC	2 cut(s)	345, 370
HinP1I	GCGC	2 cut(s)	345, 370
HinfI	GANTC	3 cut(s)	584, 815, 843
HpaII	CCGG	2 cut(s)	606, 859
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	3 cut(s)	306, 399, 703
Hpy188I	TCNGA	3 cut(s)	127, 697, 766
Hpy188III	TCNNGA	7 cut(s)	179, 242, 412, 429, 606, 827, 833
Hpy8I	GTNNAC	3 cut(s)	306, 399, 703
HpyAV	CCTTC	5 cut(s)	72, 185, 372, 833, 896
HpyCH4III	ACNGT	2 cut(s)	194, 577
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	9 cut(s)	8, 187, 306, 456, 728, 780, 793, 805, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 744
HpyF3I	CTNAG	3 cut(s)	287, 336, 899
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	2 cut(s)	370, 822
HspAI	GCGC	2 cut(s)	345, 370
Kpn2I	TCCGGA	1 cut(s)	605
Kzo9I	GATC	5 cut(s)	47, 281, 608, 799, 829
LmnI	GCTCC	2 cut(s)	244, 297
LpnPI	CCDG	6 cut(s)	274, 508, 619, 622, 790, 872
Lsp1109I	GCAGC	5 cut(s)	20, 158, 323, 712, 722
LweI	GCATC	3 cut(s)	118, 310, 712
MaeI	CTAG	2 cut(s)	296, 833
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	466, 680
MalI	GATC	5 cut(s)	49, 283, 610, 801, 831
MboI	GATC	5 cut(s)	47, 281, 608, 799, 829
MboII	GAAGA	8 cut(s)	107, 114, 454, 487, 495, 637, 698, 848
MfeI	CAATTG	1 cut(s)	809
MflI	RGATCY	2 cut(s)	281, 829
MhlI	GDGCHC	2 cut(s)	273, 308
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	6 cut(s)	133, 354, 707, 809, 867, 904
MluNI	TGGCCA	1 cut(s)	747
MlyI	GAGTC	2 cut(s)	593, 837
Mox20I	TGGCCA	1 cut(s)	747
MroI	TCCGGA	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	4 cut(s)	20, 731, 870, 907
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	747
MspI	CCGG	2 cut(s)	606, 859
MunI	CAATTG	1 cut(s)	809
Mva1269I	GAATGC	1 cut(s)	347
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	320, 744
NdeII	GATC	5 cut(s)	47, 281, 608, 799, 829
NlaIII	CATG	2 cut(s)	370, 822
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	2 cut(s)	466, 680
NsbI	TGCGCA	2 cut(s)	346, 371
OliI	CACNNNNGTG	1 cut(s)	192
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	815
PkrI	GCNGC	6 cut(s)	7, 10, 173, 313, 727, 737
PleI	GAGTC	2 cut(s)	592, 837
PpsI	GAGTC	2 cut(s)	592, 837
Psp124BI	GAGCTC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	460
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	281, 829
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	4 cut(s)	20, 731, 870, 907
SatI	GCNGC	6 cut(s)	6, 9, 172, 312, 726, 736
Sau3AI	GATC	5 cut(s)	47, 281, 608, 799, 829
Sau96I	GGNCC	1 cut(s)	460
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	2 cut(s)	593, 837
SduI	GDGCHC	2 cut(s)	273, 308
SfaNI	GCATC	3 cut(s)	118, 310, 712
SfcI	CTRYAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	6 cut(s)	133, 354, 707, 809, 867, 904
SsiI	CCGC	3 cut(s)	71, 77, 393
SspMI	CTAG	2 cut(s)	296, 833
SstI	GAGCTC	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	194, 577
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	6 cut(s)	46, 180, 264, 582, 623, 846
TasI	AATT	6 cut(s)	133, 354, 707, 809, 867, 904
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	4 cut(s)	20, 731, 870, 907
Tru9I	TTAA	4 cut(s)	20, 731, 870, 907
TseFI	GTSAC	2 cut(s)	466, 680
TseI	GCWGC	6 cut(s)	5, 8, 171, 311, 725, 735
Tsp45I	GTSAC	2 cut(s)	466, 680
TspDTI	ATGAA	1 cut(s)	589
VneI	GTGCAC	1 cut(s)	304
XapI	RAATTY	2 cut(s)	354, 707
XbaI	TCTAGA	1 cut(s)	832
XspI	CTAG	2 cut(s)	296, 833
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.