Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007962

Physical Location & Seq

Genomic Coordinates Forward (+)

38536667 .. 38540682

Gene Structure 4016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0241700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGGGAGATACAGTGCGCAGTGAACATCAGGCGGAAGAAGAAGAAGAATATGTATTGCTTGATCTTGATTCTGTTTACTCCCAGCTTCAGATTCCACCAAACGCACCATATGTACTTTCAGGTTTGGATACAATGCAACCGGTATTGATTCTAGATGGCAAATTTAAGTTGATCGGTCAGTGGGATGAGACAATTGGGACATGTCTTTTATTCAAAGAGGAAGTTGTCCTTGTTGTTCACGAAGAAACAGGACCATCAGAAGCAAACCTTTTTGCTGGCAAATGCATTGTTGATCAAAAGCAATCTTCAAGCAAGCAAGTAAAACCAGTTGGCCGCACTCATAGGATTCTAAAATTCAGATTGGCACCAAATTTTGACTCTCCTAATACTGCATCTACACAGACTGAGCAAGAAATTAAGAACTACGCCCACAAAATTATTGACTACAGACCTAATTCAAATGTGTCCATAATATTCTTCGACATGGCTTACAGACCAGGAGTCATGCCATTTATGAAAGACAAGTCACCACGCAACATGACTACCTCTTTTGTGTGTGAGAAAATTCCCAACCGCCAAAGGACAGTTCAAATACATCATTGTCGCCATCGACTACAACAGCAAGTGGATAGAGGCGGAACCGCTAACGGCAATAACTACCACCAAGGTAACTCACTTCCTCTGGAAGAACATCTACTGCCGCTATGGCGTTCCCACACAATCATCACAGACAATGGCACACAGTTCAGTATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030054 GO:0030865 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0040007 GO:0043015 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0050896 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051704 GO:0051707 GO:0055044 GO:0065003 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

253

Amino Acids

28.87

Weight (kDa)

6.06

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIIC_sub6	PF10419	13 - 122	1.2e-16	TFIIIC subunit triple barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53760 AT3G53760 AT3G53760
fragaria_vesca	FvH4_2g25810 FvH4_2g25810 FvH4_2g25810 FvH4_2g25810 FvH4_2g25810
malus_domestica	MD03G1288900.v1.1
prunus_persica	Prupe.8G262200_v2.0.a1 Prupe.8G262200_v2.0.a1
pyrus_communis	pycom03g22900 pycom11g27030
rosa_chinensis	RchiOBHm_Chr6g0294121
rosa_laevigata	RLG00000011897
rosa_multiflora	Rmu_sc0005037.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173630
rosa_rugosa	Rorug06G0241400 Rorug06G0241500 Rorug06G0241600 Rorug06G0241700
rosa_samantha	Rh6AG354000 Rh6DG354800
rosa_wichuraiana	Rw6G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	367
AciI	CCGC	6 cut(s)	35, 337, 577, 639, 645, 704
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	4 cut(s)	164, 356, 373, 567
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	203
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	4 cut(s)	217, 312, 462, 593
AhdI	GACNNNNNGTC	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	334
ApoI	RAATTY	4 cut(s)	164, 356, 373, 567
AsiGI	ACCGGT	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	367
BarI	GAAGNNNNNNTAC	2 cut(s)	681, 713
BccI	CCATC	3 cut(s)	152, 265, 618
BceAI	ACGGC	1 cut(s)	667
BciT130I	CCWGG	1 cut(s)	501
BciVI	GTATCC	1 cut(s)	124
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	448
BfuI	GTATCC	1 cut(s)	124
BglI	GCCNNNNNGGC	1 cut(s)	709
BisI	GCNGC	2 cut(s)	337, 704
BlsI	GCNGC	2 cut(s)	338, 705
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	254
BmeRI	GACNNNNNGTC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	369, 643
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	667
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	667
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	1 cut(s)	367
BshTI	ACCGGT	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	64, 174, 295
BspACI	CCGC	6 cut(s)	35, 337, 577, 639, 645, 704
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	369, 643
BspT107I	GGYRCC	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	667
BssMI	GATC	3 cut(s)	64, 174, 295
BssT1I	CCWWGG	1 cut(s)	667
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	3 cut(s)	16, 589, 747
BstC8I	GCNNGC	2 cut(s)	280, 317
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	3 cut(s)	67, 177, 298
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	3 cut(s)	64, 174, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	709
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	448
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	3 cut(s)	21, 28, 188
Cac8I	GCNNGC	2 cut(s)	280, 317
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	116
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	4 cut(s)	204, 487, 508, 541
CviJI	RGCY	3 cut(s)	88, 336, 491
CviKI_1	RGCY	3 cut(s)	88, 336, 491
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	3 cut(s)	66, 176, 297
DpnII	GATC	3 cut(s)	64, 174, 295
DriI	GACNNNNNGTC	1 cut(s)	503
EaeI	YGGCCR	1 cut(s)	334
Eam1105I	GACNNNNNGTC	1 cut(s)	503
EciI	GGCGGA	2 cut(s)	50, 654
Eco130I	CCWWGG	1 cut(s)	667
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	667
EcoT22I	ATGCAT	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	667
FaeI	CATG	4 cut(s)	207, 490, 511, 544
FalI	AAGNNNNNCTT	4 cut(s)	216, 248, 255, 287
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	4 cut(s)	203, 486, 507, 540
FauNDI	CATATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	337, 704
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	337, 704
FspBI	CTAG	1 cut(s)	155
FspI	TGCGCA	1 cut(s)	20
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	2 cut(s)	337, 704
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	207, 490, 511, 544
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	6 cut(s)	71, 94, 151, 349, 380, 504
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	522
Hpy166II	GTNNAC	3 cut(s)	26, 79, 241
Hpy188I	TCNGA	3 cut(s)	93, 262, 362
Hpy188III	TCNNGA	4 cut(s)	68, 155, 242, 686
Hpy8I	GTNNAC	3 cut(s)	26, 79, 241
HpyCH4III	ACNGT	3 cut(s)	16, 589, 747
HpyCH4V	TGCA	3 cut(s)	139, 288, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	709
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	4 cut(s)	207, 490, 511, 544
HspAI	GCGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	64, 174, 295
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	528, 671
MalI	GATC	3 cut(s)	66, 176, 297
MboI	GATC	3 cut(s)	64, 174, 295
MboII	GAAGA	8 cut(s)	50, 53, 56, 59, 257, 300, 472, 701
MfeI	CAATTG	1 cut(s)	195
MluCI	AATT	8 cut(s)	164, 195, 356, 373, 417, 438, 457, 567
MlyI	GAGTC	2 cut(s)	374, 513
MnlI	CCTC	4 cut(s)	214, 559, 629, 693
Mph1103I	ATGCAT	1 cut(s)	290
MseI	TTAA	2 cut(s)	168, 420
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	709
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	3 cut(s)	64, 174, 295
NlaIII	CATG	4 cut(s)	207, 490, 511, 544
NlaIV	GGNNCC	2 cut(s)	369, 643
NmuCI	GTSAC	1 cut(s)	528
NsbI	TGCGCA	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	290
NspI	RCATGY	1 cut(s)	207
PciI	ACATGT	1 cut(s)	203
PfeI	GAWTC	4 cut(s)	71, 94, 151, 349
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	338, 705
PleI	GAGTC	2 cut(s)	374, 512
PpsI	GAGTC	2 cut(s)	374, 512
PscI	ACATGT	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	369, 643
PspPI	GGNCC	1 cut(s)	254
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	168, 420
SatI	GCNGC	2 cut(s)	337, 704
Sau3AI	GATC	3 cut(s)	64, 174, 295
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	2 cut(s)	374, 513
ScrFI	CCNGG	1 cut(s)	501
SetI	ASST	6 cut(s)	90, 127, 273, 457, 551, 673
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	8 cut(s)	164, 195, 356, 373, 417, 438, 457, 567
SsiI	CCGC	6 cut(s)	35, 337, 577, 639, 645, 704
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	3 cut(s)	16, 589, 747
TaqI	TCGA	2 cut(s)	483, 613
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	8 cut(s)	164, 195, 356, 373, 417, 438, 457, 567
TatI	WGTACW	1 cut(s)	115
TauI	GCSGC	2 cut(s)	339, 706
TfiI	GAWTC	4 cut(s)	71, 94, 151, 349
Tru1I	TTAA	2 cut(s)	168, 420
Tru9I	TTAA	2 cut(s)	168, 420
TscAI	CASTG	3 cut(s)	21, 28, 188
TseFI	GTSAC	1 cut(s)	528
Tsp45I	GTSAC	1 cut(s)	528
TspDTI	ATGAA	1 cut(s)	533
TspRI	CASTG	3 cut(s)	21, 28, 188
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	4 cut(s)	164, 356, 373, 567
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.