Rorug06G0312000

N-terminal region of micro-spherule protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005427
Physical Location & Seq
Reverse (-)
46336997 .. 46337541
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0312000.1

Sequence Viewer

Length: 303 bp
ATGAAGCTCTTCATGAGAATGGTCGTGGTGGCCGCAGTGGTGGTTATTCTTATGAACATGGACTCAAATGAGGCCTGCAGGGTCTTAAACACAGATGTTCTGCAAAAGGGTACTGTCAATCCTCCCCCGATCCCTTCGATTATGAAACAGATGGTGCAGAGGGGACCAAACTATGAGAGTACTACCAATCAAGGACTGCACTATGTTTCTAACCGGGGCATCTACATTCCTTCAATTATCCGACAAAGATTGCAGAAGGGGACTGTACCCTCTGGCGGTAATCCAGGCACTAACGTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0002151 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005783 GO:0005844 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0010639 GO:0012505 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030234 GO:0030425 GO:0031011 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033202 GO:0034046 GO:0034708 GO:0035097 GO:0036211 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043086 GO:0043170 GO:0043204 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044463 GO:0044464 GO:0044665 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070603 GO:0070717 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097346 GO:0097447 GO:0097458 GO:0098772 GO:0120025 GO:0120038 GO:1900180 GO:1900182 GO:1901363 GO:1901564 GO:1902493 GO:1902494 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904749 GO:1904751 GO:1904949 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
FHA MCRS_N

Protein Analysis

100

Amino Acids

10.98

Weight (kDa)

10.12

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 33, 276
AclI AACGTT 1 cut(s) 294
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 30
AfaI GTAC 3 cut(s) 112, 181, 267
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 234
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
AlwI GGATC 1 cut(s) 124
AoxI GGCC 2 cut(s) 30, 72
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 164
BccI CCATC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 285
BcnI CCSGG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 215, 285
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 215, 285
BmsI GCATC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 275
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 275
BsgI GTGCAG 2 cut(s) 176, 182
BshFI GGCC 2 cut(s) 32, 74
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 2 cut(s) 177, 274
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 177, 274
BsnI GGCC 2 cut(s) 32, 74
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 2 cut(s) 33, 276
BspANI GGCC 2 cut(s) 32, 74
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 115, 265
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 76
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 2 cut(s) 213, 283
BstSFI CTRYAG 1 cut(s) 76
BsuRI GGCC 2 cut(s) 32, 74
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 76
CciI TCATGA 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 3 cut(s) 111, 180, 266
CviAII CATG 2 cut(s) 13, 58
CviJI RGCY 3 cut(s) 7, 32, 74
CviKI_1 RGCY 3 cut(s) 7, 32, 74
CviQI GTAC 3 cut(s) 111, 180, 266
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 16, 61
FaiI YATR 6 cut(s) 14, 53, 59, 143, 174, 204
FaqI GGGAC 2 cut(s) 177, 274
FatI CATG 2 cut(s) 12, 57
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 2 cut(s) 32, 74
HapII CCGG 1 cut(s) 214
Hin1II CATG 2 cut(s) 16, 61
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 3 cut(s) 144, 240, 250
HpyCH4III ACNGT 2 cut(s) 115, 265
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 5 cut(s) 78, 103, 157, 199, 253
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 2 cut(s) 16, 61
Kzo9I GATC 1 cut(s) 129
LguI GCTCTTC 1 cut(s) 14
LpnPI CCDG 6 cut(s) 64, 88, 227, 258, 270, 297
LweI GCATC 1 cut(s) 228
MaeII ACGT 1 cut(s) 294
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MluCI AATT 1 cut(s) 234
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 4 cut(s) 64, 132, 153, 280
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 215, 285
MvaI CCWGG 1 cut(s) 285
NciI CCSGG 1 cut(s) 215
NdeII GATC 1 cut(s) 129
NlaIII CATG 2 cut(s) 16, 61
NlaIV GGNNCC 1 cut(s) 165
PagI TCATGA 1 cut(s) 12
PceI AGGCCT 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 164
PstI CTGCAG 1 cut(s) 80
RsaI GTAC 3 cut(s) 112, 181, 267
RsaNI GTAC 3 cut(s) 111, 180, 266
RseI CAYNNNNRTG 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 164
SbfI CCTGCAGG 1 cut(s) 80
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 215, 285
SdaI CCTGCAGG 1 cut(s) 80
SetI ASST 2 cut(s) 9, 297
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse8387I CCTGCAGG 1 cut(s) 80
Sse9I AATT 1 cut(s) 234
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 2 cut(s) 33, 276
StuI AGGCCT 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 213, 283
TaaI ACNGT 2 cut(s) 115, 265
TaiI ACGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 179
TauI GCSGC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 17, 68, 158
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.