Rorug06G0312200

N-terminal region of micro-spherule protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005427
Physical Location & Seq
Reverse (-)
46343005 .. 46343265
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0312200.1

Sequence Viewer

Length: 261 bp
ATGTTTAAGTTGAAGAACAAAATCCTCTTGATGGTTATGCTAGTGGTGGTTTCCTTGTTGGTCATTCTTGCAGCTGCAGCCGGTCGGCCTTTAGGACATGGCAGCAGCAGTGGCAGGATGATGAAACAGATGAGCACTACTACTTTTGGTGTGAAATCCAAGGCGACGGCGGCGGTGACATCTTTAGACCCGAAGGATAAAGGGGATGTGCCGCGTTGTGGCAACCCACGCACCAACGTCCCAAAACCCGGCCATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0002151 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005783 GO:0005844 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0010639 GO:0012505 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030234 GO:0030425 GO:0031011 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033202 GO:0034046 GO:0034708 GO:0035097 GO:0036211 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043086 GO:0043170 GO:0043204 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044463 GO:0044464 GO:0044665 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070603 GO:0070717 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097346 GO:0097447 GO:0097458 GO:0098772 GO:0120025 GO:0120038 GO:1900180 GO:1900182 GO:1901363 GO:1901564 GO:1902493 GO:1902494 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904749 GO:1904751 GO:1904949 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
FHA MCRS_N

Protein Analysis

86

Amino Acids

9.06

Weight (kDa)

10.52

Isoelectric Point (pI)

22.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 214
AciI CCGC 3 cut(s) 170, 173, 212
AcoI YGGCCR 1 cut(s) 250
AfiI CCNNNNNNNGG 3 cut(s) 31, 218, 248
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 137
AoxI GGCC 2 cut(s) 86, 250
ApeKI GCWGC 5 cut(s) 71, 74, 77, 102, 105
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 5 cut(s) 61, 83, 89, 114, 117
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 183
BcnI CCSGG 1 cut(s) 249
BfaI CTAG 2 cut(s) 41, 259
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 7 cut(s) 72, 75, 78, 103, 106, 171, 212
BlsI GCNGC 7 cut(s) 73, 76, 79, 104, 107, 172, 213
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 218, 248
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 123, 211
BseLI CCNNNNNNNGG 3 cut(s) 31, 218, 248
BseMI GCAATG 1 cut(s) 253
BseXI GCAGC 5 cut(s) 61, 83, 89, 114, 117
Bsh1236I CGCG 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 2 cut(s) 88, 252
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 2 cut(s) 81, 249
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 3 cut(s) 31, 218, 248
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 2 cut(s) 88, 252
Bsp1286I GDGCHC 1 cut(s) 137
BspACI CCGC 3 cut(s) 170, 173, 212
BspANI GGCC 2 cut(s) 88, 252
BspFNI CGCG 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 123, 211
BstFNI CGCG 1 cut(s) 214
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 4 cut(s) 77, 111, 170, 228
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 5 cut(s) 61, 83, 89, 114, 117
BsuRI GGCC 2 cut(s) 88, 252
BtsCI GGATG 2 cut(s) 123, 211
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 80
CviAII CATG 1 cut(s) 98
CviJI RGCY 4 cut(s) 74, 80, 88, 252
CviKI_1 RGCY 4 cut(s) 74, 80, 88, 252
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 101
FaiI YATR 2 cut(s) 38, 99
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 7 cut(s) 72, 75, 78, 103, 106, 171, 212
FokI GGATG 2 cut(s) 130, 218
Fsp4HI GCNGC 7 cut(s) 72, 75, 78, 103, 106, 171, 212
FspBI CTAG 2 cut(s) 41, 259
GluI GCNGC 7 cut(s) 72, 75, 78, 103, 106, 171, 212
HaeIII GGCC 2 cut(s) 88, 252
HapII CCGG 2 cut(s) 81, 249
Hin1II CATG 1 cut(s) 101
HpaII CCGG 2 cut(s) 81, 249
HphI GGTGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 71, 77
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 111, 170, 228
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 1 cut(s) 101
LpnPI CCDG 2 cut(s) 94, 100
Lsp1109I GCAGC 5 cut(s) 61, 83, 89, 114, 117
MaeI CTAG 2 cut(s) 41, 259
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 137
MnlI CCTC 1 cut(s) 35
MseI TTAA 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 2 cut(s) 81, 249
MspR9I CCNGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 4 cut(s) 77, 111, 170, 228
NciI CCSGG 1 cut(s) 249
NlaIII CATG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 175
PkrI GCNGC 7 cut(s) 73, 76, 79, 104, 107, 172, 213
PstI CTGCAG 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 7 cut(s) 72, 75, 78, 103, 106, 171, 212
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 137
SetI ASST 2 cut(s) 76, 240
SfcI CTRYAG 1 cut(s) 75
SsiI CCGC 3 cut(s) 170, 173, 212
SspMI CTAG 2 cut(s) 41, 259
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 1 cut(s) 240
TauI GCSGC 2 cut(s) 173, 214
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 5 cut(s) 71, 74, 77, 102, 105
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 115
XspI CTAG 2 cut(s) 41, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.