Rorug06G0326400

Large proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005387
Physical Location & Seq
Forward (+)
47801435 .. 47806629
5195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0326400.1

Sequence Viewer

Length: 555 bp
ATGACTACGATTCGGAGATTTTGCTGCAATGATCTGCTTCGTTTCACTTCGGTCAATCTCGACCACCTCACTGAAACCTTCAATATGTCGTTCTATATGACCTATTTGGCAAGATGGCCCGATTATTTTCATGTTGCCGAAGCCCCGGGAAATCGAATCATGGGTTACATTATGGGAAAGGTTGAGGGGCAAGGTGAGTCGTGGCATGGTCATGTAACAGCGGTAACTGTTGCTCCAGAATATCGGAGGCAGCAGCTGGCCAAGAAGCTCATGAACCTCCTTGAAGACTTCAGCGATAAGATTGATAAGGGTTACTTTGTTGATCTTTTTGTGAGAGCATCAAACACTCCAGCCATAAAGATGTATGAGAAGCTTGGTTATATAATTTATAGACGAGTACTACGGTATTATTCAGGGGAGGAAGATGGGTTAGATATGAGGAAAGCATTATCTCGGGATGTTGAAAAGAAGTCAATCATACCCCTCAAACGACCAGTTACTCCTGATGAATTAGAAAGAGAGGGAGAGGGAGAGATGGTGACCCAACGAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000280 GO:0001655 GO:0001822 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006915 GO:0006950 GO:0006974 GO:0006996 GO:0007029 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007130 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007417 GO:0007420 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008630 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010605 GO:0010941 GO:0012501 GO:0016043 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0019941 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023052 GO:0030162 GO:0030163 GO:0030323 GO:0030324 GO:0030433 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031593 GO:0031647 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034613 GO:0034976 GO:0035295 GO:0035556 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0042176 GO:0042177 GO:0042221 GO:0042771 GO:0042981 GO:0043021 GO:0043022 GO:0043067 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0044703 GO:0044877 GO:0045048 GO:0045132 GO:0045143 GO:0045184 GO:0045861 GO:0045995 GO:0048232 GO:0048285 GO:0048513 GO:0048519 GO:0048523 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050821 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051205 GO:0051234 GO:0051239 GO:0051246 GO:0051248 GO:0051276 GO:0051321 GO:0051603 GO:0051641 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060322 GO:0060541 GO:0061024 GO:0061136 GO:0061857 GO:0061982 GO:0065007 GO:0065008 GO:0070059 GO:0070192 GO:0070193 GO:0070628 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0071816 GO:0071818 GO:0071840 GO:0072001 GO:0072331 GO:0072332 GO:0072379 GO:0072657 GO:0080090 GO:0090150 GO:0097190 GO:0097193 GO:0098813 GO:0140013 GO:0140030 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901799 GO:1903046 GO:1903050 GO:1903051 GO:1903362 GO:1903363 GO:2000026 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

184

Amino Acids

21.53

Weight (kDa)

7.75

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 26 - 127 2.3e-18 Acetyltransferase (GNAT) family
Acetyltransf_10 PF13673 40 - 128 1.4e-10 Acetyltransferase (GNAT) domain
Acetyltransf_7 PF13508 41 - 128 2.2e-12 Acetyltransferase (GNAT) domain
FR47 PF08445 70 - 131 1.3e-07 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 274
AfaI GTAC 1 cut(s) 399
AgsI TTSAA 3 cut(s) 82, 284, 464
AluBI AGCT 4 cut(s) 256, 268, 373, 552
AluI AGCT 4 cut(s) 256, 268, 373, 552
AlwNI CAGNNNCTG 1 cut(s) 256
Ama87I CYCGRG 2 cut(s) 145, 453
AoxI GGCC 2 cut(s) 116, 258
ApeKI GCWGC 3 cut(s) 24, 250, 253
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 2 cut(s) 146, 147
AsuHPI GGTGA 2 cut(s) 206, 550
AvaI CYCGRG 2 cut(s) 145, 453
BalI TGGCCA 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 11, 262, 265
BccI CCATC 3 cut(s) 108, 419, 529
BcnI CCSGG 2 cut(s) 146, 147
BisI GCNGC 3 cut(s) 25, 251, 254
BlsI GCNGC 3 cut(s) 26, 252, 255
BmcAI AGTACT 1 cut(s) 399
Bme1390I CCNGG 2 cut(s) 146, 147
BmeT110I CYCGRG 2 cut(s) 145, 453
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 146, 147
BmsI GCATC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 291
BpmI CTGGAG 2 cut(s) 219, 333
BpuMI CCSGG 2 cut(s) 146, 147
BsaJI CCNNGG 2 cut(s) 144, 145
BsaXI ACNNNNNCTCC 4 cut(s) 217, 247, 522, 552
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 144, 145
BseGI GGATG 1 cut(s) 463
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 494
BseXI GCAGC 3 cut(s) 11, 262, 265
BshFI GGCC 2 cut(s) 118, 260
BsiHKCI CYCGRG 2 cut(s) 145, 453
BsiSI CCGG 1 cut(s) 146
BsnI GGCC 2 cut(s) 118, 260
BsoBI CYCGRG 2 cut(s) 145, 453
Bsp143I GATC 2 cut(s) 31, 322
BspACI CCGC 1 cut(s) 221
BspANI GGCC 2 cut(s) 118, 260
BspHI TCATGA 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 494
BssECI CCNNGG 2 cut(s) 144, 145
BssMI GATC 2 cut(s) 31, 322
Bst4CI ACNGT 2 cut(s) 229, 405
BstC8I GCNNGC 1 cut(s) 258
BstEII GGTNACC 1 cut(s) 538
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 2 cut(s) 34, 325
BstMBI GATC 2 cut(s) 31, 322
BstPI GGTNACC 1 cut(s) 538
BstSCI CCNGG 2 cut(s) 144, 145
BstV1I GCAGC 3 cut(s) 11, 262, 265
BstV2I GAAGAC 1 cut(s) 291
BsuRI GGCC 2 cut(s) 118, 260
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 256
CciI TCATGA 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 117
Cfr9I CCCGGG 1 cut(s) 145
Csp6I GTAC 1 cut(s) 398
CviAII CATG 5 cut(s) 131, 160, 206, 212, 271
CviJI RGCY 8 cut(s) 118, 143, 256, 260, 268, 353, 373, 552
CviKI_1 RGCY 8 cut(s) 118, 143, 256, 260, 268, 353, 373, 552
CviQI GTAC 1 cut(s) 398
DpnI GATC 2 cut(s) 33, 324
DpnII GATC 2 cut(s) 31, 322
EaeI YGGCCR 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 274
Eco88I CYCGRG 2 cut(s) 145, 453
Eco91I GGTNACC 1 cut(s) 538
EcoO65I GGTNACC 1 cut(s) 538
FaeI CATG 5 cut(s) 134, 163, 209, 215, 274
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 5 cut(s) 130, 159, 205, 211, 270
Fnu4HI GCNGC 3 cut(s) 25, 251, 254
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 3 cut(s) 25, 251, 254
GluI GCNGC 3 cut(s) 25, 251, 254
GsuI CTGGAG 2 cut(s) 219, 333
HaeIII GGCC 2 cut(s) 118, 260
HapII CCGG 1 cut(s) 146
Hin1II CATG 5 cut(s) 134, 163, 209, 215, 274
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 3 cut(s) 10, 156, 197
HpaII CCGG 1 cut(s) 146
HphI GGTGA 2 cut(s) 206, 550
Hpy188I TCNGA 2 cut(s) 15, 246
Hpy188III TCNNGA 5 cut(s) 59, 236, 271, 455, 503
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 229, 405
HpyCH4V TGCA 1 cut(s) 27
Hsp92II CATG 5 cut(s) 134, 163, 209, 215, 274
Kzo9I GATC 2 cut(s) 31, 322
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 7 cut(s) 159, 242, 249, 363, 399, 507, 516
Lsp1109I GCAGC 3 cut(s) 11, 262, 265
LweI GCATC 1 cut(s) 347
MaeIII GTNAC 6 cut(s) 164, 214, 223, 311, 496, 538
MalI GATC 2 cut(s) 33, 324
MboI GATC 2 cut(s) 31, 322
MboII GAAGA 2 cut(s) 296, 434
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 2 cut(s) 384, 509
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 9 cut(s) 77, 178, 240, 287, 412, 432, 494, 514, 520
Mox20I TGGCCA 1 cut(s) 260
MscI TGGCCA 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 210, 359
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 2 cut(s) 221, 256
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 146, 147
NciI CCSGG 2 cut(s) 146, 147
NdeII GATC 2 cut(s) 31, 322
NlaIII CATG 5 cut(s) 134, 163, 209, 215, 274
NmuCI GTSAC 1 cut(s) 538
PagI TCATGA 1 cut(s) 270
PfeI GAWTC 2 cut(s) 10, 156
PkrI GCNGC 3 cut(s) 26, 252, 255
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 538
PspPI GGNCC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 2 cut(s) 210, 359
SatI GCNGC 3 cut(s) 25, 251, 254
Sau3AI GATC 2 cut(s) 31, 322
Sau96I GGNCC 1 cut(s) 117
ScaI AGTACT 1 cut(s) 399
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 146, 147
SfaNI GCATC 1 cut(s) 347
SmaI CCCGGG 1 cut(s) 147
SmiMI CAYNNNNRTG 2 cut(s) 210, 359
Sse9I AATT 2 cut(s) 384, 509
SsiI CCGC 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 144, 145
TaaI ACNGT 2 cut(s) 229, 405
TaqI TCGA 2 cut(s) 60, 154
TaqII GACCGA 1 cut(s) 40
TasI AATT 2 cut(s) 384, 509
TatI WGTACW 1 cut(s) 397
TfiI GAWTC 2 cut(s) 10, 156
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 3 cut(s) 24, 250, 253
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 3 cut(s) 119, 287, 522
TspMI CCCGGG 1 cut(s) 145
TspRI CASTG 1 cut(s) 76
XmaI CCCGGG 1 cut(s) 145
ZrmI AGTACT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.