Rorug06G0404200

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016850
Physical Location & Seq
Forward (+)
54802506 .. 54804845
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0404200.1

Sequence Viewer

Length: 1752 bp
ATGATCAAACAGGGTATCTTCCAAACCGAACCTAAGAAGCAAGCAAGCCGGGGAGGAAACCGTGCTGTACTATTTGTTTTTGCAACTGAGGGACTCGAAAACATGGCGTTCATTGCGAATGCTATGAGCCTCGTAACTTACTTCTATGGATTCATGAACTTAAGCATAACGAAGTCTGCCACCACACTCACCAACTTCATGGGGACTGCATTCCTACTAACCCTTGTCGGTGGATACATCTCCGATACCTACTGGTCACGATTCAAAACTTGTCTCATCTTCGCACTCATTGAATTGGTGGGATATGTCCTTTTAACTGTGCAAGCACACTATGCCCAACTGAGACCAACTCCGTGCAAATTAGATGTTGCAGAACCTCACTGCGAGGCAGCAGACAGAGGCCAACTTGCTCTCCTCTACACTGGACTCTATCTAATTGCATTCGGCACCAGCGGGGTTAAATCTGCTTTACCGGCCTTGGGGGCTGATCAGTTCGATGACAAGGACCCTAAGCACGCAGGCCAATTGTCAAGCTTCTTCAACTGGTTCTTTTTAAGCCTCACCATTGGTGCTATATTTGGCGTCACTTTCGTGGTCTGGATTAGTGCCAACCATGGCTGGGACTTGGCCTTTGGGGTCAGCACATTGGCAGTCCTTTTTGCAGTGGTCTCTCTATGTATGGGCAAATCACTCTACCGCAACAATAAAATTAATCCAAAGGGAAGCCCCCTCCTAAGTATACTACAGGTTCTTGTGGCCTCAATCCGAAACCGAAAACTTCCAATTCCAGAGAAAGCAGAGGACTTGCATGAGATCCATGACAAAGAAGCAGGGGAAGGCCATGAATATCTTCAGAGAACAGAGCAATTCAAATTCTTGGACCGGGCAGCGGTCAATTATTGGCCTACTATAGAGGGTTCATCAAAATCTACAAACCCAGGAGGAGCCTGGAGCCTCTGCACAGTCACACAAGTTGAAGAAGTAAAGCTCCTAATCCGAATGCTCCCAATCATACTCAGCACTATCTTCATGAACACATGCTTGGCACAACTCCAAACTTTCTCCATCCAACAAAGCCTGACCTTGGACAGACATTTCATTGGCTTCGAAATCCCCGGCCCATCAATGCCAGCCATCCCTCTGCTCTGCATGTTTTTCCTCATCCCAATCTACGACCGAGTCTTCGTCCCACTCGTCCGAAAACTCACCGGAATTCCCACCGGCATTCGCCACCTACAGCGTATTGCAGTTGGGCTCGTGCTCTCCGTGATTTCAATGGCCATTTCCGGAATGGTAGAGACTCGCCGCAAATCAGTGGCCGTGAAACACAACATGGTCGACTCCAGTGAGCCTCTGCCAATGAGTGTGTTTTGGCTTGGTTTCCAATTTGCCATATTTGGGGCCGCAGACATGTTCACAGTAGTTGGTCTTTTGGAGTTCTTCTATGCTGAGAGCGCGGCAGGGATGAAGTCGCTGGGCACAGCCATCTCTTGGTGTTCGATTGCGTTTGGGTATTTCTTGAGCTCGGTGGTGGTGGAGACGGTGAACAAAGTGAGCGGAGGGTGGTTGGCAAGTAATAATCTCAATAGAGACAAGTTGAACTACTTCTATTGGTTGCTGTCAGGGATGAGTGTGATGAACTTTGGGGCATATTTGCTCTGTGCATATTGGTACAAGTACAAAAAGGTTGATGTAGTGGTGCTGGAGAAGCAAGGCGATTCCGATGGCGGTGTTGAAATGATCAAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSP20

Protein Analysis

583

Amino Acids

64.53

Weight (kDa)

8.55

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 88 - 519 1.4e-90 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016850)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18340
malus_domestica MD06G1239100.v1.1
prunus_persica Prupe.5G242900_v2.0.a1
pyrus_communis pycom06g21460
rosa_chinensis RchiOBHm_Chr7g0177251
rosa_laevigata RLG00000005551
rosa_multiflora Rmu_sc0005310.1_g000013
rosa_roxburghii Rroxscaffold_3G00276010
rosa_rugosa Rorug06G0404200
rosa_samantha Rh7AG004200 Rh7BG004000 Rh7CG003900 Rh7DG003900
rosa_wichuraiana Rw7G000340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 1491
AccBSI CCGCTC 1 cut(s) 1557
AccI GTMKAC 2 cut(s) 739, 1338
AccII CGCG 1 cut(s) 1457
AccIII TCCGGA 1 cut(s) 1286
AciI CCGC 8 cut(s) 453, 697, 890, 1306, 1404, 1457, 1557, 1728
AclWI GGATC 1 cut(s) 808
AcoI YGGCCR 2 cut(s) 1278, 1317
AcsI RAATTY 2 cut(s) 872, 1212
AcuI CTGAAG 1 cut(s) 836
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 3 cut(s) 69, 1673, 1679
AfiI CCNNNNNNNGG 6 cut(s) 479, 619, 889, 1084, 1398, 1491
AflII CTTAAG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 1410
AgsI TTSAA 8 cut(s) 265, 293, 541, 871, 977, 1275, 1600, 1736
AjnI CCWGG 2 cut(s) 937, 947
AjuI GAANNNNNNNTTGG 2 cut(s) 1025, 1057
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 3 cut(s) 534, 988, 1524
AluI AGCT 3 cut(s) 534, 988, 1524
Alw21I GWGCWC 2 cut(s) 1263, 1526
Alw26I GTCTC 6 cut(s) 278, 337, 673, 1292, 1532, 1584
AlwI GGATC 1 cut(s) 808
Aor13HI TCCGGA 1 cut(s) 1286
ApeKI GCWGC 2 cut(s) 389, 887
ApoI RAATTY 2 cut(s) 872, 1212
ArsI GACNNNNNNTTYG 4 cut(s) 614, 646, 1166, 1198
AseI ATTAAT 1 cut(s) 711
Asp700I GAANNNNTTC 2 cut(s) 849, 1604
AspLEI GCGC 1 cut(s) 1457
AspS9I GGNCC 4 cut(s) 505, 880, 1118, 1401
AsuC2I CCSGG 3 cut(s) 50, 884, 1116
AsuHPI GGTGA 4 cut(s) 181, 553, 1198, 1555
AsuII TTCGAA 1 cut(s) 1107
AvaII GGWCC 2 cut(s) 505, 880
BaeGI GKGCMC 1 cut(s) 1481
BalI TGGCCA 1 cut(s) 1280
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 2 cut(s) 1257, 1526
BauI CACGAG 1 cut(s) 1256
BbsI GAAGAC 1 cut(s) 1174
Bbv12I GWGCWC 2 cut(s) 1263, 1526
BbvI GCAGC 2 cut(s) 401, 899
BccI CCATC 5 cut(s) 1073, 1129, 1142, 1493, 1718
BceAI ACGGC 1 cut(s) 1304
BciT130I CCWGG 2 cut(s) 939, 949
BciVI GTATCC 1 cut(s) 227
BclI TGATCA 3 cut(s) 3, 487, 1740
BcnI CCSGG 3 cut(s) 50, 884, 1116
BcoDI GTCTC 6 cut(s) 278, 337, 673, 1292, 1532, 1584
BfmI CTRYAG 3 cut(s) 743, 909, 1235
BfrI CTTAAG 1 cut(s) 160
BfuI GTATCC 1 cut(s) 227
BglI GCCNNNNNGGC 1 cut(s) 482
BisI GCNGC 5 cut(s) 390, 888, 1306, 1404, 1458
BlsI GCNGC 5 cut(s) 391, 889, 1307, 1405, 1459
Bme1390I CCNGG 5 cut(s) 50, 884, 939, 949, 1116
Bme18I GGWCC 2 cut(s) 505, 880
BmgT120I GGNCC 4 cut(s) 505, 880, 1118, 1401
BmiI GGNNCC 5 cut(s) 448, 507, 946, 953, 1402
BmrFI CCNGG 5 cut(s) 50, 884, 939, 949, 1116
BpiI GAAGAC 1 cut(s) 1174
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpmI CTGGAG 3 cut(s) 970, 1327, 1724
Bpu10I CCTNAGC 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 1107
BpuEI CTTGAG 1 cut(s) 1540
BpuMI CCSGG 3 cut(s) 50, 884, 1116
BsaHI GRCGYC 1 cut(s) 582
BsaI GGTCTC 2 cut(s) 337, 673
BsaJI CCNNGG 6 cut(s) 49, 477, 613, 937, 1083, 1114
BsaWI WCCGGW 2 cut(s) 1208, 1286
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 6 cut(s) 479, 619, 889, 1084, 1398, 1491
Bse118I RCCGGY 2 cut(s) 472, 1220
Bse1I ACTGG 4 cut(s) 257, 427, 548, 1344
Bse3DI GCAATG 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 1286
BseBI CCWGG 2 cut(s) 939, 949
BseDI CCNNGG 6 cut(s) 49, 477, 613, 937, 1083, 1114
BseGI GGATG 5 cut(s) 1065, 1134, 1161, 1470, 1632
BseLI CCNNNNNNNGG 6 cut(s) 479, 619, 889, 1084, 1398, 1491
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 4 cut(s) 78, 332, 1030, 1440
BseNI ACTGG 4 cut(s) 257, 427, 548, 1344
BseRI GAGGAG 2 cut(s) 404, 957
BseSI GKGCMC 1 cut(s) 1481
BseXI GCAGC 2 cut(s) 401, 899
BseYI CCCAGC 2 cut(s) 618, 1474
BsgI GTGCAG 1 cut(s) 943
Bsh1236I CGCG 1 cut(s) 1457
Bsh1285I CGRYCG 1 cut(s) 1177
BshNI GGYRCC 1 cut(s) 446
BsiEI CGRYCG 1 cut(s) 1177
BsiHKAI GWGCWC 2 cut(s) 1263, 1526
BsiSI CCGG 7 cut(s) 49, 473, 883, 1116, 1209, 1221, 1287
BslFI GGGAC 4 cut(s) 105, 217, 635, 1172
BslI CCNNNNNNNGG 6 cut(s) 479, 619, 889, 1084, 1398, 1491
BsmAI GTCTC 6 cut(s) 278, 337, 673, 1292, 1532, 1584
BsmBI CGTCTC 1 cut(s) 1532
BsmFI GGGAC 4 cut(s) 105, 217, 635, 1172
BsmI GAATGC 5 cut(s) 124, 209, 440, 1005, 1224
Bso31I GGTCTC 2 cut(s) 337, 673
Bsp119I TTCGAA 1 cut(s) 1107
Bsp1286I GDGCHC 4 cut(s) 1257, 1263, 1481, 1526
Bsp13I TCCGGA 1 cut(s) 1286
Bsp143I GATC 4 cut(s) 3, 487, 813, 1740
Bsp19I CCATGG 1 cut(s) 613
BspACI CCGC 8 cut(s) 453, 697, 890, 1306, 1404, 1457, 1557, 1728
BspCNI CTCAG 4 cut(s) 79, 333, 1029, 1441
BspEI TCCGGA 1 cut(s) 1286
BspFNI CGCG 1 cut(s) 1457
BspHI TCATGA 2 cut(s) 153, 1029
BspLI GGNNCC 5 cut(s) 448, 507, 946, 953, 1402
BspPI GGATC 1 cut(s) 808
BspT104I TTCGAA 1 cut(s) 1107
BspT107I GGYRCC 1 cut(s) 446
BspTI CTTAAG 1 cut(s) 160
BspTNI GGTCTC 2 cut(s) 337, 673
BsrBI CCGCTC 1 cut(s) 1557
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 472, 1220
BsrI ACTGG 4 cut(s) 257, 427, 548, 1344
BssAI RCCGGY 2 cut(s) 472, 1220
BssECI CCNNGG 6 cut(s) 49, 477, 613, 937, 1083, 1114
BssMI GATC 4 cut(s) 3, 487, 813, 1740
BssNAI GTATAC 1 cut(s) 740
BssNI GRCGYC 1 cut(s) 582
BssSI CACGAG 1 cut(s) 1256
BssT1I CCWWGG 3 cut(s) 477, 613, 1083
Bst1107I GTATAC 1 cut(s) 740
Bst2BI CACGAG 1 cut(s) 1256
Bst2UI CCWGG 2 cut(s) 939, 949
Bst4CI ACNGT 5 cut(s) 62, 319, 964, 1420, 1543
BstACI GRCGYC 1 cut(s) 582
BstAFI CTTAAG 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 332
BstBI TTCGAA 1 cut(s) 1107
BstC8I GCNNGC 6 cut(s) 42, 46, 324, 516, 520, 1131
BstDEI CTNAG 7 cut(s) 33, 87, 341, 510, 734, 1016, 1449
BstDSI CCRYGG 1 cut(s) 613
BstF5I GGATG 5 cut(s) 1065, 1134, 1161, 1470, 1632
BstFNI CGCG 1 cut(s) 1457
BstHHI GCGC 1 cut(s) 1457
BstKTI GATC 4 cut(s) 6, 490, 816, 1743
BstMAI GTCTC 6 cut(s) 278, 337, 673, 1292, 1532, 1584
BstMBI GATC 4 cut(s) 3, 487, 813, 1740
BstMCI CGRYCG 1 cut(s) 1177
BstMWI GCNNNNNNNGC 6 cut(s) 113, 332, 473, 482, 1454, 1708
BstNI CCWGG 2 cut(s) 939, 949
BstNSI RCATGY 3 cut(s) 1041, 1153, 1414
BstSCI CCNGG 5 cut(s) 48, 882, 937, 947, 1114
BstSFI CTRYAG 3 cut(s) 743, 909, 1235
BstSLI GKGCMC 1 cut(s) 1481
BstUI CGCG 1 cut(s) 1457
BstV1I GCAGC 2 cut(s) 401, 899
BstV2I GAAGAC 1 cut(s) 1174
BstX2I RGATCY 1 cut(s) 813
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 813
BstZ17I GTATAC 1 cut(s) 740
BsuI GTATCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 613
BtsCI GGATG 5 cut(s) 1065, 1134, 1161, 1470, 1632
BtsI GCAGTG 2 cut(s) 379, 669
BtsIMutI CAGTG 5 cut(s) 379, 420, 669, 1320, 1351
Cac8I GCNNGC 6 cut(s) 42, 46, 324, 516, 520, 1131
CciI TCATGA 2 cut(s) 153, 1029
CfoI GCGC 1 cut(s) 1457
Cfr10I RCCGGY 2 cut(s) 472, 1220
Cfr13I GGNCC 4 cut(s) 505, 880, 1118, 1401
CseI GACGC 1 cut(s) 571
Csp6I GTAC 3 cut(s) 68, 1672, 1678
CviQI GTAC 3 cut(s) 68, 1672, 1678
DdeI CTNAG 7 cut(s) 33, 87, 341, 510, 734, 1016, 1449
DpnI GATC 4 cut(s) 5, 489, 815, 1742
DpnII GATC 4 cut(s) 3, 487, 813, 1740
EaeI YGGCCR 2 cut(s) 1278, 1317
Ecl136II GAGCTC 1 cut(s) 1524
Eco130I CCWWGG 3 cut(s) 477, 613, 1083
Eco24I GRGCYC 2 cut(s) 1257, 1526
Eco31I GGTCTC 2 cut(s) 337, 673
Eco47I GGWCC 2 cut(s) 505, 880
Eco53kI GAGCTC 1 cut(s) 1524
Eco57I CTGAAG 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 1524
EcoO109I RGGNCCY 1 cut(s) 505
EcoRI GAATTC 1 cut(s) 1212
EcoRII CCWGG 2 cut(s) 937, 947
EcoT14I CCWWGG 3 cut(s) 477, 613, 1083
EcoT38I GRGCYC 2 cut(s) 1257, 1526
ErhI CCWWGG 3 cut(s) 477, 613, 1083
Esp3I CGTCTC 1 cut(s) 1532
FaqI GGGAC 4 cut(s) 105, 217, 635, 1172
FauI CCCGC 1 cut(s) 446
FbaI TGATCA 3 cut(s) 3, 487, 1740
FblI GTMKAC 2 cut(s) 739, 1338
Fnu4HI GCNGC 5 cut(s) 390, 888, 1306, 1404, 1458
FokI GGATG 5 cut(s) 1052, 1121, 1148, 1477, 1639
FriOI GRGCYC 2 cut(s) 1257, 1526
Fsp4HI GCNGC 5 cut(s) 390, 888, 1306, 1404, 1458
GlaI GCGC 1 cut(s) 1456
GluI GCNGC 5 cut(s) 390, 888, 1306, 1404, 1458
GsaI CCCAGC 2 cut(s) 622, 1478
GsuI CTGGAG 3 cut(s) 970, 1327, 1724
HapII CCGG 7 cut(s) 49, 473, 883, 1116, 1209, 1221, 1287
HgaI GACGC 1 cut(s) 571
HhaI GCGC 1 cut(s) 1457
Hin1I GRCGYC 1 cut(s) 582
Hin6I GCGC 1 cut(s) 1455
HinP1I GCGC 1 cut(s) 1455
HincII GTYRAC 1 cut(s) 1339
HindII GTYRAC 1 cut(s) 1339
HindIII AAGCTT 1 cut(s) 532
HinfI GANTC 8 cut(s) 93, 150, 261, 426, 1179, 1300, 1340, 1718
HpaII CCGG 7 cut(s) 49, 473, 883, 1116, 1209, 1221, 1287
HphI GGTGA 4 cut(s) 181, 553, 1198, 1555
Hpy166II GTNNAC 4 cut(s) 740, 1339, 1416, 1546
Hpy188I TCNGA 6 cut(s) 244, 767, 855, 998, 1199, 1723
Hpy188III TCNNGA 7 cut(s) 154, 258, 598, 788, 1030, 1287, 1519
Hpy8I GTNNAC 4 cut(s) 740, 1339, 1416, 1546
HpyAV CCTTC 1 cut(s) 830
HpyCH4III ACNGT 5 cut(s) 62, 319, 964, 1420, 1543
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 332, 473, 482, 1454, 1708
HpyF3I CTNAG 7 cut(s) 33, 87, 341, 510, 734, 1016, 1449
Hsp92I GRCGYC 1 cut(s) 582
HspAI GCGC 1 cut(s) 1455
Kpn2I TCCGGA 1 cut(s) 1286
Ksp22I TGATCA 3 cut(s) 3, 487, 1740
Kzo9I GATC 4 cut(s) 3, 487, 813, 1740
LmnI GCTCC 4 cut(s) 944, 951, 993, 1008
Lsp1109I GCAGC 2 cut(s) 401, 899
MaeIII GTNAC 4 cut(s) 133, 255, 583, 964
MalI GATC 4 cut(s) 5, 489, 815, 1742
MbiI CCGCTC 1 cut(s) 1557
MboI GATC 4 cut(s) 3, 487, 813, 1740
MboII GAAGA 8 cut(s) 10, 271, 529, 842, 989, 1018, 1174, 1432
MfeI CAATTG 1 cut(s) 524
MflI RGATCY 1 cut(s) 813
MhlI GDGCHC 4 cut(s) 1257, 1263, 1481, 1526
MlsI TGGCCA 1 cut(s) 1280
MluNI TGGCCA 1 cut(s) 1280
MlyI GAGTC 5 cut(s) 87, 420, 1188, 1294, 1334
MmeI TCCRAC 1 cut(s) 1093
Mox20I TGGCCA 1 cut(s) 1280
MroI TCCGGA 1 cut(s) 1286
MroXI GAANNNNTTC 2 cut(s) 849, 1604
MscI TGGCCA 1 cut(s) 1280
MseI TTAA 5 cut(s) 161, 314, 459, 554, 711
MslI CAYNNNNRTG 1 cut(s) 590
Msp20I TGGCCA 1 cut(s) 1280
MspA1I CMGCKG 2 cut(s) 453, 890
MspCI CTTAAG 1 cut(s) 160
MspI CCGG 7 cut(s) 49, 473, 883, 1116, 1209, 1221, 1287
MspR9I CCNGG 5 cut(s) 50, 884, 939, 949, 1116
MunI CAATTG 1 cut(s) 524
Mva1269I GAATGC 5 cut(s) 124, 209, 440, 1005, 1224
MvaI CCWGG 2 cut(s) 939, 949
MvnI CGCG 1 cut(s) 1457
MwoI GCNNNNNNNGC 6 cut(s) 113, 332, 473, 482, 1454, 1708
NciI CCSGG 3 cut(s) 50, 884, 1116
NcoI CCATGG 1 cut(s) 613
NdeII GATC 4 cut(s) 3, 487, 813, 1740
NlaIV GGNNCC 5 cut(s) 448, 507, 946, 953, 1402
NmuCI GTSAC 3 cut(s) 255, 583, 964
NspI RCATGY 3 cut(s) 1041, 1153, 1414
NspV TTCGAA 1 cut(s) 1107
OliI CACNNNNGTG 1 cut(s) 590
PagI TCATGA 2 cut(s) 153, 1029
PciI ACATGT 1 cut(s) 1410
PcsI WCGNNNNNNNCGW 2 cut(s) 1191, 1263
PctI GAATGC 5 cut(s) 124, 209, 440, 1005, 1224
PdmI GAANNNNTTC 2 cut(s) 849, 1604
PfeI GAWTC 3 cut(s) 150, 261, 1718
PflFI GACNNNGTC 1 cut(s) 1178
PflMI CCANNNNNTGG 1 cut(s) 1491
PkrI GCNGC 5 cut(s) 391, 889, 1307, 1405, 1459
PleI GAGTC 5 cut(s) 87, 420, 1187, 1294, 1334
PpsI GAGTC 5 cut(s) 87, 420, 1187, 1294, 1334
PpuMI RGGWCCY 1 cut(s) 505
PscI ACATGT 1 cut(s) 1410
PshBI ATTAAT 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 1526
Psp5II RGGWCCY 1 cut(s) 505
Psp6I CCWGG 2 cut(s) 937, 947
PspFI CCCAGC 2 cut(s) 618, 1474
PspGI CCWGG 2 cut(s) 937, 947
PspN4I GGNNCC 5 cut(s) 448, 507, 946, 953, 1402
PspPI GGNCC 4 cut(s) 505, 880, 1118, 1401
PspPPI RGGWCCY 1 cut(s) 505
PsuI RGATCY 1 cut(s) 813
PsyI GACNNNGTC 1 cut(s) 1178
RsaI GTAC 3 cut(s) 69, 1673, 1679
RsaNI GTAC 3 cut(s) 68, 1672, 1678
RseI CAYNNNNRTG 1 cut(s) 590
SacI GAGCTC 1 cut(s) 1526
SalI GTCGAC 1 cut(s) 1337
SaqAI TTAA 5 cut(s) 161, 314, 459, 554, 711
SatI GCNGC 5 cut(s) 390, 888, 1306, 1404, 1458
Sau3AI GATC 4 cut(s) 3, 487, 813, 1740
Sau96I GGNCC 4 cut(s) 505, 880, 1118, 1401
SchI GAGTC 5 cut(s) 87, 420, 1188, 1294, 1334
ScrFI CCNGG 5 cut(s) 50, 884, 939, 949, 1116
SduI GDGCHC 4 cut(s) 1257, 1263, 1481, 1526
SfcI CTRYAG 3 cut(s) 743, 909, 1235
SfuI TTCGAA 1 cut(s) 1107
SinI GGWCC 2 cut(s) 505, 880
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 2 cut(s) 160, 1519
SmoI CTYRAG 2 cut(s) 160, 1519
SsiI CCGC 8 cut(s) 453, 697, 890, 1306, 1404, 1457, 1557, 1728
SstI GAGCTC 1 cut(s) 1526
StyD4I CCNGG 5 cut(s) 48, 882, 937, 947, 1114
StyI CCWWGG 3 cut(s) 477, 613, 1083
TaaI ACNGT 5 cut(s) 62, 319, 964, 1420, 1543
TaqI TCGA 5 cut(s) 96, 495, 1107, 1338, 1499
TaqII GACCGA 1 cut(s) 1191
TatI WGTACW 2 cut(s) 67, 1677
TauI GCSGC 3 cut(s) 1308, 1406, 1460
TfiI GAWTC 3 cut(s) 150, 261, 1718
Tru1I TTAA 5 cut(s) 161, 314, 459, 554, 711
Tru9I TTAA 5 cut(s) 161, 314, 459, 554, 711
TscAI CASTG 5 cut(s) 386, 427, 669, 1320, 1351
TseFI GTSAC 3 cut(s) 255, 583, 964
TseI GCWGC 2 cut(s) 389, 887
Tsp45I GTSAC 3 cut(s) 255, 583, 964
TspGWI ACGGA 2 cut(s) 342, 1255
TspRI CASTG 5 cut(s) 386, 427, 669, 1320, 1351
Tth111I GACNNNGTC 1 cut(s) 1178
Van91I CCANNNNNTGG 1 cut(s) 1491
Vha464I CTTAAG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 505, 880
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 2 cut(s) 872, 1212
XceI RCATGY 3 cut(s) 1041, 1153, 1414
XcmI CCANNNNNNNNNTGG 2 cut(s) 945, 1288
XmiI GTMKAC 2 cut(s) 739, 1338
XmnI GAANNNNTTC 2 cut(s) 849, 1604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.