Rh7AG004200

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016850
Physical Location & Seq
Forward (+)
309852 .. 311435
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG004200.1

Sequence Viewer

Length: 687 bp
ATGATTCCGAGTTTCAATTCCATGGATCAAAGCAAGGCAGCCGGAGCTGATCATCAGGCCAAACGTACTTACGAGGACTTTGAACCCTTCTGCAAATGGCATAACCGCGACAATGTTGTTGAGGTCCATATTCAAGGTTTCAGAAAGGAACACCTAAGTGTCCGTACCACTCAGACGGGGATGCTTACAATCCATGGAGAACGTCCACTGGACCAAACTAAATCTACATGGAGCCGTTTCCACAAAGAAATTAAGCTTCCAAACAACTGCGACACAAATAGAGTTGCGGCAAAGTTTGCTGCAGGAGTTCTTACAGTAACAATGCCTCCCAAAATTGCACCACCTCAACCTCAATCTCCAGAAGATCAGAAACAACAGCTTAGCAATCATGAAAAGTTACCAGAACCAAGCAACAATGATACTCAAACAAATAATGATAAAGCGATAGCTAAATTCGTTAAACAAAATCAGGACAAGCAGCCAACCACCGATGAAAATGCTGCATTGCTTGATGAAGAGGTTAAGACAGGAAGCTGCTGCGAATTGGGGCAAAAGAGTACTTTAGCTTCCAAGAATTGGAAGGTGAAACTCGTGTTGGTGGTTGCCGTGGTGGTCGCTTTTGGTTTCGGGGCATATATCAGATACAAACACGGCCATTACTCATACAGCTGGGAGCAGACAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSP20

Protein Analysis

228

Amino Acids

25.8

Weight (kDa)

8.27

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 39 - 116 2.6e-12 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016850)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18340
malus_domestica MD06G1239100.v1.1
prunus_persica Prupe.5G242900_v2.0.a1
pyrus_communis pycom06g21460
rosa_chinensis RchiOBHm_Chr7g0177251
rosa_laevigata RLG00000005551
rosa_multiflora Rmu_sc0005310.1_g000013
rosa_roxburghii Rroxscaffold_3G00276010
rosa_rugosa Rorug06G0404200
rosa_samantha Rh7AG004200 Rh7BG004000 Rh7CG003900 Rh7DG003900
rosa_wichuraiana Rw7G000340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 576
AccII CGCG 1 cut(s) 108
AciI CCGC 2 cut(s) 106, 287
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 1 cut(s) 452
AfaI GTAC 3 cut(s) 67, 166, 559
AfiI CCNNNNNNNGG 1 cut(s) 576
AgsI TTSAA 3 cut(s) 16, 83, 134
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 7 cut(s) 47, 256, 379, 449, 534, 566, 669
AluI AGCT 7 cut(s) 47, 256, 379, 449, 534, 566, 669
AlwI GGATC 1 cut(s) 33
AoxI GGCC 2 cut(s) 57, 652
ApeKI GCWGC 6 cut(s) 38, 299, 478, 500, 534, 537
ApoI RAATTY 1 cut(s) 452
AspS9I GGNCC 2 cut(s) 124, 211
AsuHPI GGTGA 1 cut(s) 595
AvaII GGWCC 2 cut(s) 124, 211
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
BauI CACGAG 1 cut(s) 590
BbvI GCAGC 6 cut(s) 50, 286, 487, 490, 521, 524
BceAI ACGGC 3 cut(s) 219, 590, 667
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BclI TGATCA 1 cut(s) 49
BfaI CTAG 1 cut(s) 685
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 7 cut(s) 39, 288, 300, 479, 501, 535, 538
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 7 cut(s) 40, 289, 301, 480, 502, 536, 539
BmcAI AGTACT 1 cut(s) 559
Bme18I GGWCC 2 cut(s) 124, 211
BmgT120I GGNCC 2 cut(s) 124, 211
BmiI GGNNCC 1 cut(s) 233
BmsI GCATC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 342
Bpu1102I GCTNAGC 1 cut(s) 380
BsaJI CCNNGG 3 cut(s) 21, 193, 606
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 576
Bse1I ACTGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 503
BseDI CCNNGG 3 cut(s) 21, 193, 606
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 576
BseMI GCAATG 1 cut(s) 503
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 6 cut(s) 50, 286, 487, 490, 521, 524
BseYI CCCAGC 1 cut(s) 669
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 59, 654
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 576
BsnI GGCC 2 cut(s) 59, 654
Bsp143I GATC 3 cut(s) 25, 49, 364
Bsp1720I GCTNAGC 1 cut(s) 380
Bsp19I CCATGG 2 cut(s) 21, 193
BspACI CCGC 2 cut(s) 106, 287
BspANI GGCC 2 cut(s) 59, 654
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 233
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 503
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 3 cut(s) 21, 193, 606
BssMI GATC 3 cut(s) 25, 49, 364
BssSI CACGAG 1 cut(s) 590
BssT1I CCWWGG 2 cut(s) 21, 193
Bst2BI CACGAG 1 cut(s) 590
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 510
BstAPI GCANNNNNTGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 155, 171, 380
BstDSI CCRYGG 3 cut(s) 21, 193, 606
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 3 cut(s) 28, 52, 367
BstMBI GATC 3 cut(s) 25, 49, 364
BstMWI GCNNNNNNNGC 2 cut(s) 44, 296
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 6 cut(s) 50, 286, 487, 490, 521, 524
BsuRI GGCC 2 cut(s) 59, 654
BtgI CCRYGG 3 cut(s) 21, 193, 606
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 206
CciI TCATGA 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 124, 211
Csp6I GTAC 3 cut(s) 66, 165, 558
CviAII CATG 4 cut(s) 22, 194, 228, 389
CviQI GTAC 3 cut(s) 66, 165, 558
DdeI CTNAG 3 cut(s) 155, 171, 380
DpnI GATC 3 cut(s) 27, 51, 366
DpnII GATC 3 cut(s) 25, 49, 364
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 21, 193
Eco47I GGWCC 2 cut(s) 124, 211
EcoT14I CCWWGG 2 cut(s) 21, 193
ErhI CCWWGG 2 cut(s) 21, 193
FaeI CATG 4 cut(s) 25, 197, 231, 392
FaiI YATR 9 cut(s) 23, 102, 129, 195, 229, 390, 634, 636, 664
FatI CATG 4 cut(s) 21, 193, 227, 388
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 7 cut(s) 39, 288, 300, 479, 501, 535, 538
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 7 cut(s) 39, 288, 300, 479, 501, 535, 538
FspBI CTAG 1 cut(s) 685
GluI GCNGC 7 cut(s) 39, 288, 300, 479, 501, 535, 538
GsaI CCCAGC 1 cut(s) 673
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 59, 654
HapII CCGG 1 cut(s) 42
Hin1II CATG 4 cut(s) 25, 197, 231, 392
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 5 cut(s) 9, 143, 174, 369, 641
Hpy188III TCNNGA 3 cut(s) 359, 389, 470
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 97, 574
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 2 cut(s) 64, 202
HpyCH4V TGCA 4 cut(s) 93, 302, 338, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 296
HpyF3I CTNAG 3 cut(s) 155, 171, 380
HpySE526I ACGT 2 cut(s) 64, 202
Hsp92II CATG 4 cut(s) 25, 197, 231, 392
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 3 cut(s) 25, 49, 364
LmnI GCTCC 3 cut(s) 44, 231, 673
LpnPI CCDG 9 cut(s) 41, 55, 194, 288, 372, 414, 455, 513, 655
Lsp1109I GCAGC 6 cut(s) 50, 286, 487, 490, 521, 524
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 685
MaeII ACGT 2 cut(s) 64, 202
MaeIII GTNAC 2 cut(s) 316, 396
MalI GATC 3 cut(s) 27, 51, 366
MboI GATC 3 cut(s) 25, 49, 364
MboII GAAGA 2 cut(s) 374, 527
MluCI AATT 6 cut(s) 16, 249, 333, 452, 542, 574
MnlI CCTC 6 cut(s) 67, 115, 336, 354, 360, 511
MseI TTAA 3 cut(s) 252, 459, 522
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 669
MspI CCGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 44, 296
NcoI CCATGG 2 cut(s) 21, 193
NdeII GATC 3 cut(s) 25, 49, 364
NlaIII CATG 4 cut(s) 25, 197, 231, 392
NlaIV GGNNCC 1 cut(s) 233
OliI CACNNNNGTG 1 cut(s) 156
PagI TCATGA 1 cut(s) 388
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 576
PkrI GCNGC 7 cut(s) 40, 289, 301, 480, 502, 536, 539
PspFI CCCAGC 1 cut(s) 669
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 2 cut(s) 124, 211
PstI CTGCAG 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 669
RsaI GTAC 3 cut(s) 67, 166, 559
RsaNI GTAC 3 cut(s) 66, 165, 558
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 3 cut(s) 252, 459, 522
SatI GCNGC 7 cut(s) 39, 288, 300, 479, 501, 535, 538
Sau3AI GATC 3 cut(s) 25, 49, 364
Sau96I GGNCC 2 cut(s) 124, 211
ScaI AGTACT 1 cut(s) 559
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 2 cut(s) 124, 211
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 6 cut(s) 16, 249, 333, 452, 542, 574
SsiI CCGC 2 cut(s) 106, 287
SspMI CTAG 1 cut(s) 685
StyI CCWWGG 2 cut(s) 21, 193
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 2 cut(s) 67, 205
TasI AATT 6 cut(s) 16, 249, 333, 452, 542, 574
TatI WGTACW 1 cut(s) 557
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 252, 459, 522
Tru9I TTAA 3 cut(s) 252, 459, 522
TscAI CASTG 1 cut(s) 213
TseI GCWGC 6 cut(s) 38, 299, 478, 500, 534, 537
TspDTI ATGAA 3 cut(s) 405, 507, 528
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 576
VpaK11BI GGWCC 2 cut(s) 124, 211
XapI RAATTY 1 cut(s) 452
XspI CTAG 1 cut(s) 685
ZrmI AGTACT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.