Rorug06G0414200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001818
Physical Location & Seq
Reverse (-)
55476700 .. 55477169
470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0414200.1

Sequence Viewer

Length: 339 bp
ATGAATCTCTGCTCACACCCTCGACCACCTCCACACCCTCGACTAAACTCCACACCCTCATGGTGGAGTGAGAGAGAGCAAGTACCAACCTCAAACATCGACCTCCACTGCTGGCTCCGCTTCCCCCTCGATTTCCTCCCCTTCCGCTCCCCCCACCCCGTCGCCTCCTCCTCCGGCCTCCTCTACCTCTGGGCCGACTCCCGCGACTCCACCAAGTCCCTTGTCGTCTGCAACCCTCTCACCCACCGCTTCCTCACCTTACCTCAGCTCGGCTCCGCCTGGTCAAGGCACGGCTCCGTCCTCGTTGACTCCGCCACCCGCGTCATGGTCCTTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4

Protein Analysis

112

Amino Acids

12.71

Weight (kDa)

9.15

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 147
AccII CGCG 2 cut(s) 204, 321
AciI CCGC 7 cut(s) 118, 145, 202, 247, 276, 312, 319
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 4 cut(s) 63, 269, 285, 325
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
AoxI GGCC 2 cut(s) 175, 192
AspS9I GGNCC 2 cut(s) 192, 328
AsuHPI GGTGA 2 cut(s) 232, 247
AvaII GGWCC 1 cut(s) 328
BbvCI CCTCAGC 1 cut(s) 264
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 280
BfaI CTAG 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 192, 328
BmiI GGNNCC 3 cut(s) 116, 274, 295
BmrFI CCNGG 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 264
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 269, 285, 325
BseBI CCWGG 1 cut(s) 280
BseLI CCNNNNNNNGG 4 cut(s) 63, 269, 285, 325
BseMII CTCAG 1 cut(s) 278
BseRI GAGGAG 3 cut(s) 157, 160, 170
Bsh1236I CGCG 2 cut(s) 204, 321
BshFI GGCC 2 cut(s) 177, 194
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 63, 269, 285, 325
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 2 cut(s) 177, 194
BspACI CCGC 7 cut(s) 118, 145, 202, 247, 276, 312, 319
BspANI GGCC 2 cut(s) 177, 194
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 2 cut(s) 204, 321
BspLI GGNNCC 3 cut(s) 116, 274, 295
BsrBI CCGCTC 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 264
BstENI CCTNNNNNAGG 1 cut(s) 283
BstFNI CGCG 2 cut(s) 204, 321
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstUI CGCG 2 cut(s) 204, 321
BsuRI GGCC 2 cut(s) 177, 194
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 192, 328
CseI GACGC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 60, 325
CviJI RGCY 6 cut(s) 115, 177, 194, 268, 273, 294
CviKI_1 RGCY 6 cut(s) 115, 177, 194, 268, 273, 294
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 1 cut(s) 264
EciI GGCGGA 2 cut(s) 265, 301
Eco47I GGWCC 1 cut(s) 328
EcoNI CCTNNNNNAGG 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 278
FaeI CATG 2 cut(s) 63, 328
FaiI YATR 2 cut(s) 61, 326
FaqI GGGAC 1 cut(s) 202
FatI CATG 2 cut(s) 59, 324
FauI CCCGC 2 cut(s) 209, 326
FspBI CTAG 1 cut(s) 337
HaeIII GGCC 2 cut(s) 177, 194
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 310
Hin1II CATG 2 cut(s) 63, 328
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 4 cut(s) 4, 197, 206, 308
HpaII CCGG 1 cut(s) 174
HphI GGTGA 2 cut(s) 232, 247
Hpy166II GTNNAC 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 2 cut(s) 63, 328
LmnI GCTCC 4 cut(s) 120, 152, 278, 299
LpnPI CCDG 5 cut(s) 97, 175, 187, 265, 292
MaeI CTAG 1 cut(s) 337
MbiI CCGCTC 1 cut(s) 147
MlyI GAGTC 3 cut(s) 191, 200, 302
MslI CAYNNNNRTG 1 cut(s) 58
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 2 cut(s) 204, 321
MwoI GCNNNNNNNGC 1 cut(s) 117
NlaIII CATG 2 cut(s) 63, 328
NlaIV GGNNCC 3 cut(s) 116, 274, 295
NmeAIII GCCGAG 1 cut(s) 249
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 3 cut(s) 191, 200, 302
PpsI GAGTC 3 cut(s) 191, 200, 302
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 3 cut(s) 116, 274, 295
PspPI GGNCC 2 cut(s) 192, 328
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 58
Sau96I GGNCC 2 cut(s) 192, 328
SchI GAGTC 3 cut(s) 191, 200, 302
ScrFI CCNGG 1 cut(s) 280
SetI ASST 8 cut(s) 31, 92, 105, 189, 260, 265, 270, 338
SinI GGWCC 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 58
SsiI CCGC 7 cut(s) 118, 145, 202, 247, 276, 312, 319
SspMI CTAG 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 278
TaqI TCGA 4 cut(s) 22, 40, 99, 129
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 328
XagI CCTNNNNNAGG 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XspI CTAG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.