Rorug06G0414500

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001818
Physical Location & Seq
Forward (+)
55494958 .. 55497077
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0414500.1

Sequence Viewer

Length: 1047 bp
ATGGATTTTAGAACGCAAGACAATGAAATGAGGACGTCAGGCTCTGCTTTGAGCTATGGTGGCACTCATTTAACGAAGGAATCATCGGGAGGTGGAGAAAAAAGAAGACTTGGAAATATTCACAATGGCACTCCTACTGCCCTCTCTGCTTTCACTGCTACTCACCAAACCCTAGACCACCATCACCCTCTTCAACCTCACCATGTTCAACCAGTGCCACTAACAACCAGAGATCTAGATCCAGATCGAGTCGGCTCCACTGCAGTTGCACCCAGTGGTGGTGTTTTGTCGGGTGGGCCCAAGTCCAAGACACCATCGTCGACATCCACAACCAGCAACGTCCGCTACCGAGAATGTCTCAAGAACCACGCAGCCAACATCGGCGGTAATGTGTTCGACGGGTGCGGAGAGTTCATGCCTTGCGGCGAGGAAGGAACCCTCGAAGCTCTGAAATGCGCGGCTTGTGATTGCCACAGGAACTTCCACCGTAAGGAGGTGGACGGCGAGACGACGCCGTTCGGGCCCGGCTCCAGATCAAGAAGCATAATGCTGAGCCCTCTCCAGCTCCCTCCGCCGCTTCCGTCTCCGTCCTCGGCTCTCCACCACCACCGCCACCAGAAATTCTCGATTGTTCAACCCATGAGCGTGGCTTTCGGTGGGGGAGGAGGGGGGACGGAGTCTTCGAGTGAGGATCTGAACGTTTTCGACAATGGGGATGGAGTAGGAGGAGGGGTGGTGCCGCCCTTTAGCTTGTCGAAGAAGCGGTTCAGGACCAAGTTCACGGCGGAGCAGAAGGTGAAGATGGTGGAGTTTGCGGAGCGAGTCGGGTGGAGAATTCAGAAGCAGGATGAGGAGGATGTGGAGAAGTTTTGTGATGAGGTGGGAGTGAAGAGGCAGGTGCTGAGGGTATGGATGCACAATAACAAGAACACAGTGAAGAAGATGCAGCATGACCATGACATCACCACCACCACAAGTCAGCTGGCATTGGAGAATGTTGAAGCTCATGAAGAACCAGGTCAAGAAGGAGGAGGGACAGACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4

Protein Analysis

348

Amino Acids

37.69

Weight (kDa)

6.55

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 113 - 166 2.7e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 886
AasI GACNNNNNNGTC 1 cut(s) 316
AatII GACGTC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 886
AccB1I GGYRCC 1 cut(s) 736
AccI GTMKAC 1 cut(s) 320
AccII CGCG 1 cut(s) 458
AclI AACGTT 1 cut(s) 699
AclWI GGATC 2 cut(s) 233, 699
AcsI RAATTY 2 cut(s) 620, 834
AcyI GRCGYC 2 cut(s) 35, 512
AdeI CACNNNGTG 1 cut(s) 275
AfiI CCNNNNNNNGG 3 cut(s) 278, 490, 493
AgsI TTSAA 4 cut(s) 194, 209, 635, 1001
AjnI CCWGG 1 cut(s) 1015
AluBI AGCT 6 cut(s) 54, 446, 565, 750, 982, 1004
AluI AGCT 6 cut(s) 54, 446, 565, 750, 982, 1004
Alw26I GTCTC 3 cut(s) 362, 500, 588
AlwI GGATC 2 cut(s) 233, 699
AlwNI CAGNNNCTG 2 cut(s) 44, 901
AoxI GGCC 2 cut(s) 296, 521
ApaI GGGCCC 2 cut(s) 300, 525
ApeKI GCWGC 2 cut(s) 371, 946
ApoI RAATTY 2 cut(s) 620, 834
ArsI GACNNNNNNTTYG 2 cut(s) 664, 696
Asp700I GAANNNNTTC 2 cut(s) 701, 764
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 5 cut(s) 296, 297, 521, 522, 771
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 5 cut(s) 155, 176, 191, 808, 955
AvaII GGWCC 1 cut(s) 771
BaeGI GKGCMC 2 cut(s) 300, 525
BanI GGYRCC 1 cut(s) 736
BanII GRGCYC 3 cut(s) 300, 525, 557
BbsI GAAGAC 2 cut(s) 112, 672
BbvCI CCTCAGC 1 cut(s) 902
BbvI GCAGC 2 cut(s) 383, 958
BccI CCATC 4 cut(s) 189, 322, 710, 796
BceAI ACGGC 3 cut(s) 499, 517, 798
BciT130I CCWGG 1 cut(s) 1017
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 3 cut(s) 362, 500, 588
BfaI CTAG 2 cut(s) 173, 236
BfmI CTRYAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 886
BglI GCCNNNNNGGC 1 cut(s) 520
BglII AGATCT 1 cut(s) 232
BisI GCNGC 6 cut(s) 372, 424, 459, 575, 740, 947
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 6 cut(s) 373, 425, 460, 576, 741, 948
Bme1390I CCNGG 2 cut(s) 525, 1017
Bme18I GGWCC 1 cut(s) 771
BmgT120I GGNCC 5 cut(s) 296, 297, 521, 522, 771
BmiI GGNNCC 6 cut(s) 256, 298, 436, 523, 529, 738
BmrFI CCNGG 2 cut(s) 525, 1017
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 903, 933
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 2 cut(s) 112, 672
BplI GAGNNNNNCTC 2 cut(s) 342, 374
BpmI CTGGAG 2 cut(s) 514, 545
Bpu10I CCTNAGC 1 cut(s) 902
Bpu1102I GCTNAGC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 525
BsaBI GATNNNNATC 2 cut(s) 237, 243
BsaHI GRCGYC 2 cut(s) 35, 512
BsaJI CCNNGG 1 cut(s) 591
BsaXI ACNNNNNCTCC 4 cut(s) 717, 720, 747, 750
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 490, 493
Bse1I ACTGG 2 cut(s) 212, 273
Bse8I GATNNNNATC 2 cut(s) 237, 243
BseBI CCWGG 1 cut(s) 1017
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 5 cut(s) 323, 721, 853, 862, 918
BseJI GATNNNNATC 2 cut(s) 237, 243
BseLI CCNNNNNNNGG 3 cut(s) 278, 490, 493
BseMII CTCAG 2 cut(s) 542, 893
BseNI ACTGG 2 cut(s) 212, 273
BseRI GAGGAG 4 cut(s) 678, 741, 866, 1044
BseSI GKGCMC 2 cut(s) 300, 525
BseXI GCAGC 2 cut(s) 383, 958
Bsh1236I CGCG 1 cut(s) 458
BshFI GGCC 2 cut(s) 298, 523
BshNI GGYRCC 1 cut(s) 736
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 3 cut(s) 278, 490, 493
BsmAI GTCTC 3 cut(s) 362, 500, 588
BsmBI CGTCTC 2 cut(s) 500, 588
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 2 cut(s) 298, 523
Bsp120I GGGCCC 2 cut(s) 296, 521
Bsp1286I GDGCHC 3 cut(s) 300, 525, 557
Bsp143I GATC 5 cut(s) 232, 238, 244, 533, 691
Bsp1720I GCTNAGC 1 cut(s) 551
BspANI GGCC 2 cut(s) 298, 523
BspCNI CTCAG 2 cut(s) 543, 894
BspFNI CGCG 1 cut(s) 458
BspHI TCATGA 1 cut(s) 1006
BspLI GGNNCC 6 cut(s) 256, 298, 436, 523, 529, 738
BspMAI CTGCAG 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 886
BspPI GGATC 2 cut(s) 233, 699
BspT107I GGYRCC 1 cut(s) 736
BsrI ACTGG 2 cut(s) 212, 273
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 5 cut(s) 232, 238, 244, 533, 691
BssNI GRCGYC 2 cut(s) 35, 512
Bst2UI CCWGG 1 cut(s) 1017
Bst4CI ACNGT 2 cut(s) 488, 934
Bst6I CTCTTC 2 cut(s) 195, 884
BstACI GRCGYC 2 cut(s) 35, 512
BstC8I GCNNGC 1 cut(s) 984
BstDEI CTNAG 2 cut(s) 551, 902
BstF5I GGATG 5 cut(s) 323, 721, 853, 862, 918
BstFNI CGCG 1 cut(s) 458
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 5 cut(s) 235, 241, 247, 536, 694
BstMAI GTCTC 3 cut(s) 362, 500, 588
BstMBI GATC 5 cut(s) 232, 238, 244, 533, 691
BstMWI GCNNNNNNNGC 6 cut(s) 60, 146, 155, 342, 520, 571
BstNI CCWGG 1 cut(s) 1017
BstSCI CCNGG 2 cut(s) 523, 1015
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 2 cut(s) 300, 525
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 2 cut(s) 383, 958
BstV2I GAAGAC 2 cut(s) 112, 672
BstX2I RGATCY 3 cut(s) 232, 238, 691
BstXI CCANNNNNNTGG 1 cut(s) 646
BstYI RGATCY 3 cut(s) 232, 238, 691
BsuRI GGCC 2 cut(s) 298, 523
BtsCI GGATG 5 cut(s) 323, 721, 853, 862, 918
BtsI GCAGTG 2 cut(s) 153, 258
BtsIMutI CAGTG 5 cut(s) 153, 219, 258, 280, 939
BveI ACCTGC 1 cut(s) 886
Cac8I GCNNGC 1 cut(s) 984
CaiI CAGNNNCTG 2 cut(s) 44, 901
CciI TCATGA 1 cut(s) 1006
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 5 cut(s) 296, 297, 521, 522, 771
CseI GACGC 1 cut(s) 520
CsiI ACCWGGT 1 cut(s) 1015
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 6 cut(s) 203, 415, 640, 950, 956, 1007
DdeI CTNAG 2 cut(s) 551, 902
DpnI GATC 5 cut(s) 234, 240, 246, 535, 693
DpnII GATC 5 cut(s) 232, 238, 244, 533, 691
DraIII CACNNNGTG 1 cut(s) 275
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 195, 884
EarI CTCTTC 2 cut(s) 195, 884
EciI GGCGGA 2 cut(s) 561, 800
Eco24I GRGCYC 3 cut(s) 300, 525, 557
Eco47I GGWCC 1 cut(s) 771
EcoRI GAATTC 1 cut(s) 834
EcoRII CCWGG 1 cut(s) 1015
EcoT38I GRGCYC 3 cut(s) 300, 525, 557
Esp3I CGTCTC 2 cut(s) 500, 588
FaeI CATG 6 cut(s) 206, 418, 643, 953, 959, 1010
FaqI GGGAC 1 cut(s) 685
FatI CATG 6 cut(s) 202, 414, 639, 949, 955, 1006
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 6 cut(s) 372, 424, 459, 575, 740, 947
FokI GGATG 5 cut(s) 310, 728, 860, 869, 925
FriOI GRGCYC 3 cut(s) 300, 525, 557
Fsp4HI GCNGC 6 cut(s) 372, 424, 459, 575, 740, 947
FspBI CTAG 2 cut(s) 173, 236
GlaI GCGC 1 cut(s) 457
GluI GCNGC 6 cut(s) 372, 424, 459, 575, 740, 947
GsuI CTGGAG 2 cut(s) 514, 545
HaeIII GGCC 2 cut(s) 298, 523
HapII CCGG 1 cut(s) 525
HgaI GACGC 1 cut(s) 520
HhaI GCGC 1 cut(s) 458
Hin1I GRCGYC 2 cut(s) 35, 512
Hin1II CATG 6 cut(s) 206, 418, 643, 953, 959, 1010
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HinfI GANTC 4 cut(s) 80, 249, 677, 822
HpaII CCGG 1 cut(s) 525
HphI GGTGA 5 cut(s) 155, 176, 191, 808, 955
Hpy166II GTNNAC 3 cut(s) 321, 499, 780
Hpy188I TCNGA 3 cut(s) 450, 696, 840
Hpy8I GTNNAC 3 cut(s) 321, 499, 780
Hpy99I CGWCG 3 cut(s) 322, 401, 514
HpyAV CCTTC 4 cut(s) 70, 425, 787, 1019
HpyCH4III ACNGT 2 cut(s) 488, 934
HpyCH4IV ACGT 3 cut(s) 35, 339, 699
HpyCH4V TGCA 4 cut(s) 263, 269, 916, 946
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 146, 155, 342, 520, 571
HpyF3I CTNAG 2 cut(s) 551, 902
HpySE526I ACGT 3 cut(s) 35, 339, 699
Hsp92I GRCGYC 2 cut(s) 35, 512
Hsp92II CATG 6 cut(s) 206, 418, 643, 953, 959, 1010
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 5 cut(s) 232, 238, 244, 533, 691
LmnI GCTCC 5 cut(s) 260, 533, 570, 787, 817
Lsp1109I GCAGC 2 cut(s) 383, 958
LweI GCATC 2 cut(s) 903, 933
MabI ACCWGGT 1 cut(s) 1015
MaeI CTAG 2 cut(s) 173, 236
MaeII ACGT 3 cut(s) 35, 339, 699
MalI GATC 5 cut(s) 234, 240, 246, 535, 693
MboI GATC 5 cut(s) 232, 238, 244, 533, 691
MboII GAAGA 9 cut(s) 117, 182, 672, 769, 811, 901, 949, 952, 1022
MflI RGATCY 3 cut(s) 232, 238, 691
MhlI GDGCHC 3 cut(s) 300, 525, 557
MluCI AATT 2 cut(s) 620, 834
MlyI GAGTC 3 cut(s) 258, 686, 831
MroXI GAANNNNTTC 2 cut(s) 701, 764
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 2 cut(s) 644, 954
MspA1I CMGCKG 1 cut(s) 982
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 2 cut(s) 525, 1017
MvaI CCWGG 1 cut(s) 1017
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 6 cut(s) 60, 146, 155, 342, 520, 571
NciI CCSGG 1 cut(s) 525
NdeII GATC 5 cut(s) 232, 238, 244, 533, 691
NlaIII CATG 6 cut(s) 206, 418, 643, 953, 959, 1010
NlaIV GGNNCC 6 cut(s) 256, 298, 436, 523, 529, 738
NmeAIII GCCGAG 1 cut(s) 572
PagI TCATGA 1 cut(s) 1006
PaqCI CACCTGC 1 cut(s) 886
PcsI WCGNNNNNNNCGW 1 cut(s) 680
PdmI GAANNNNTTC 2 cut(s) 701, 764
PfeI GAWTC 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 676
PkrI GCNGC 6 cut(s) 373, 425, 460, 576, 741, 948
PleI GAGTC 3 cut(s) 257, 685, 830
PpsI GAGTC 3 cut(s) 257, 685, 830
Psp1406I AACGTT 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 1015
PspGI CCWGG 1 cut(s) 1015
PspN4I GGNNCC 6 cut(s) 256, 298, 436, 523, 529, 738
PspOMI GGGCCC 2 cut(s) 296, 521
PspPI GGNCC 5 cut(s) 296, 297, 521, 522, 771
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 2 cut(s) 44, 901
PsuI RGATCY 3 cut(s) 232, 238, 691
PsyI GACNNNGTC 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 982
RseI CAYNNNNRTG 2 cut(s) 644, 954
SalI GTCGAC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 6 cut(s) 372, 424, 459, 575, 740, 947
Sau3AI GATC 5 cut(s) 232, 238, 244, 533, 691
Sau96I GGNCC 5 cut(s) 296, 297, 521, 522, 771
SchI GAGTC 3 cut(s) 258, 686, 831
ScrFI CCNGG 2 cut(s) 525, 1017
SduI GDGCHC 3 cut(s) 300, 525, 557
SexAI ACCWGGT 1 cut(s) 1015
SfaNI GCATC 2 cut(s) 903, 933
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 771
SmiMI CAYNNNNRTG 2 cut(s) 644, 954
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 2 cut(s) 620, 834
SspI AATATT 1 cut(s) 118
SspMI CTAG 2 cut(s) 173, 236
StyD4I CCNGG 2 cut(s) 523, 1015
TaaI ACNGT 2 cut(s) 488, 934
TaiI ACGT 3 cut(s) 38, 342, 702
TaqI TCGA 8 cut(s) 247, 320, 396, 441, 626, 683, 705, 755
TasI AATT 2 cut(s) 620, 834
TauI GCSGC 4 cut(s) 426, 461, 577, 742
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 5 cut(s) 160, 219, 265, 280, 939
TseI GCWGC 2 cut(s) 371, 946
TspDTI ATGAA 3 cut(s) 39, 403, 1023
TspGWI ACGGA 3 cut(s) 570, 576, 689
TspRI CASTG 5 cut(s) 160, 219, 265, 280, 939
Tth111I GACNNNGTC 1 cut(s) 676
VpaK11BI GGWCC 1 cut(s) 771
XapI RAATTY 2 cut(s) 620, 834
XbaI TCTAGA 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 979
XmiI GTMKAC 1 cut(s) 320
XmnI GAANNNNTTC 2 cut(s) 701, 764
XspI CTAG 2 cut(s) 173, 236
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.