Rorug07G0002600

C2 and GRAM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011354
Physical Location & Seq
Forward (+)
279603 .. 280356
754 bp
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UTR
Exon/CDS
Intron
Rorug07G0002600.1

Sequence Viewer

Length: 330 bp
ATGAGCGGCGGCGGCAGAGCTCCACCGACGGCGAGCACGAGCGTGACGACCACGATCACCCTTGAGAATCCGGACGCGTCGTCGTCATCTTCGTCGGGATCCACATCTTCGCCGTTGGTTTTGCGGCTGAATCGGAAGAAGAAGCAAGTCACCTGGAAGGAGGGAACCGTCGACAACGAGTTTATGCAGAAGAAGAGCTCCAAAAAGTGCTGCATCTTCCACAAGGATAAGCCCTTTGACGAAGACGATACCGATGATGACGACGATCACCACCACGACCACGACCACGACGATCCCCCCTCATCTTCTCAAAATCACAGCAGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4782 GRAM

Protein Analysis

109

Amino Acids

11.93

Weight (kDa)

5.52

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPI_Ypi1 PF07491 44 - 89 2.6e-17 Protein phosphatase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50170
fragaria_vesca FvH4_5g06260 FvH4_5g06260 FvH4_5g06260
malus_domestica MD06G1166100.v1.1
prunus_persica Prupe.5G166000_v2.0.a1
pyrus_communis pycom06g14860
rosa_chinensis RchiOBHm_Chr7g0192601
rosa_laevigata RLG00000004348
rosa_multiflora Rmu_sc0004161.1_g000002
rosa_roxburghii Rroxscaffold_3G00262850
rosa_rugosa Rorug07G0002600 Rorug07G0002700 Rorug07G0002800
rosa_samantha Rh7AG127000 Rh7BG129600 Rh7CG131100 Rh7CG132000 Rh7DG130600
rosa_wichuraiana Rw7G010940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 4 cut(s) 6, 9, 12, 124
AclWI GGATC 3 cut(s) 93, 106, 287
AflIII ACRYGT 1 cut(s) 75
AhdI GACNNNNNGTC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 152
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 2 cut(s) 20, 198
AluI AGCT 2 cut(s) 20, 198
Alw21I GWGCWC 3 cut(s) 22, 38, 200
AlwI GGATC 3 cut(s) 93, 106, 287
AlwNI CAGNNNCTG 1 cut(s) 327
Aor13HI TCCGGA 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 210, 321
AsuHPI GGTGA 3 cut(s) 49, 142, 260
BamHI GGATCC 1 cut(s) 98
BanII GRGCYC 2 cut(s) 22, 200
BauI CACGAG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 3 cut(s) 22, 38, 200
BbvI GCAGC 1 cut(s) 197
BceAI ACGGC 2 cut(s) 45, 97
BciT130I CCWGG 1 cut(s) 154
BisI GCNGC 6 cut(s) 7, 10, 13, 125, 211, 322
BlsI GCNGC 6 cut(s) 8, 11, 14, 126, 212, 323
Bme1390I CCNGG 1 cut(s) 154
BmeRI GACNNNNNGTC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 100, 166
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 103
BseAI TCCGGA 1 cut(s) 70
BseBI CCWGG 1 cut(s) 154
BseJI GATNNNNATC 1 cut(s) 103
BseXI GCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 77
BsiHKAI GWGCWC 3 cut(s) 22, 38, 200
BsiSI CCGG 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 22, 38, 200
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 4 cut(s) 54, 98, 265, 292
BspACI CCGC 4 cut(s) 6, 9, 12, 124
BspEI TCCGGA 1 cut(s) 70
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 2 cut(s) 100, 166
BspPI GGATC 3 cut(s) 93, 106, 287
BspQI GCTCTTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 6
BssMI GATC 4 cut(s) 54, 98, 265, 292
BssSI CACGAG 1 cut(s) 37
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 34
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 4 cut(s) 57, 101, 268, 295
BstMBI GATC 4 cut(s) 54, 98, 265, 292
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 34
CaiI CAGNNNCTG 1 cut(s) 327
CseI GACGC 3 cut(s) 66, 83, 313
CviJI RGCY 4 cut(s) 20, 127, 198, 232
CviKI_1 RGCY 4 cut(s) 20, 127, 198, 232
DpnI GATC 4 cut(s) 56, 100, 267, 294
DpnII GATC 4 cut(s) 54, 98, 265, 292
DriI GACNNNNNGTC 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 188
Eam1105I GACNNNNNGTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 188
Ecl136II GAGCTC 2 cut(s) 20, 198
Eco24I GRGCYC 2 cut(s) 22, 200
Eco53kI GAGCTC 2 cut(s) 20, 198
EcoICRI GAGCTC 2 cut(s) 20, 198
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 2 cut(s) 22, 200
FaiI YATR 1 cut(s) 185
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 6 cut(s) 7, 10, 13, 125, 211, 322
FriOI GRGCYC 2 cut(s) 22, 200
Fsp4HI GCNGC 6 cut(s) 7, 10, 13, 125, 211, 322
GluI GCNGC 6 cut(s) 7, 10, 13, 125, 211, 322
HapII CCGG 1 cut(s) 71
HgaI GACGC 3 cut(s) 66, 83, 313
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 67, 130
HpaII CCGG 1 cut(s) 71
HphI GGTGA 3 cut(s) 49, 142, 260
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 135, 329
Hpy188III TCNNGA 2 cut(s) 71, 96
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 7 cut(s) 31, 82, 85, 97, 173, 266, 293
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 187, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 4 cut(s) 54, 98, 265, 292
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 2 cut(s) 25, 203
LpnPI CCDG 3 cut(s) 84, 139, 166
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 43, 148
MalI GATC 4 cut(s) 56, 100, 267, 294
MbiI CCGCTC 1 cut(s) 6
MboI GATC 4 cut(s) 54, 98, 265, 292
MboII GAAGA 9 cut(s) 81, 99, 148, 151, 202, 205, 208, 254, 297
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 3 cut(s) 22, 38, 200
MluI ACGCGT 1 cut(s) 75
MnlI CCTC 2 cut(s) 154, 310
MroI TCCGGA 1 cut(s) 70
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 12
NdeII GATC 4 cut(s) 54, 98, 265, 292
NlaIV GGNNCC 2 cut(s) 100, 166
NmuCI GTSAC 2 cut(s) 43, 148
OliI CACNNNNGTG 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 4 cut(s) 35, 44, 89, 288
PfeI GAWTC 2 cut(s) 67, 130
PkrI GCNGC 6 cut(s) 8, 11, 14, 126, 212, 323
Psp124BI GAGCTC 2 cut(s) 22, 200
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 100, 166
PstNI CAGNNNCTG 1 cut(s) 327
PsuI RGATCY 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 41
SacI GAGCTC 2 cut(s) 22, 200
SalI GTCGAC 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 188
SatI GCNGC 6 cut(s) 7, 10, 13, 125, 211, 322
Sau3AI GATC 4 cut(s) 54, 98, 265, 292
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 3 cut(s) 22, 38, 200
SetI ASST 3 cut(s) 22, 155, 200
SfaNI GCATC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SsiI CCGC 4 cut(s) 6, 9, 12, 124
SstI GAGCTC 2 cut(s) 22, 200
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 171
TauI GCSGC 4 cut(s) 9, 12, 15, 127
TfiI GAWTC 2 cut(s) 67, 130
TseFI GTSAC 2 cut(s) 43, 148
TseI GCWGC 2 cut(s) 210, 321
Tsp45I GTSAC 2 cut(s) 43, 148
XmiI GTMKAC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.