Rorug07G0002700

C2 and GRAM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011354
Physical Location & Seq
Reverse (-)
280495 .. 283307
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0002700.1

Sequence Viewer

Length: 1044 bp
ATGTCGCCTTCAAATACAGGGTCGGTGGGCAACGGAGGAGGAGGAAAGAATTACATAGAGCACCAAGTCTCCAAGATGGACACTCTCGCCGGCGTTGCTATCAAATACGGCGTTGAGGTCGCTGACATTAAAAGGATGAATGGCTTTGCTACAGATCTTCAAATGTTTGCTTTGAAGACCTTGAAAATACCTTTACCAGGAAGACATTCACCATCTACTGCTTCTCTTTCTCCACAAGAAAACAACACTGAAAAGTCATCCTCAGGTCTTGGCCAGCCTAATTTGCTACCACCATTCCGATCTGTAGGTTCAAGAGCTCCCAAGGATAAGGTCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTAAAACCTCCAAATCGGAGGGGCTCAACTGAAGGCATGGAGATGGCTGTTTACAGAAGTAGAAGTTCAGAAGACTTCGATGATGGCTTGTTGTCAAAGGCCTCACCATTTTCTGATTCTCAAAGTCACCATAACATGACTAGACGTTTTTCTGTTGGTCAATTGACTGAGAATGGTGCAATGGCTGATTATATGCACTTTGCAGACTCCATGGATGGAGAGGGTGAGAAATCTGATGATAAGTCAGTCCGAAGGCGTCAGAAAACTGAAGTTGAAAATGGGAATGTCACACCAGAGAGGATGTTAAAAGGGGAAAAAAGTGGTGGGAGCAGTGGTTTCTCAGCCTCAACAGGAAAGGGTTTAGCCATGAGGCCGAAATCAGCAAGCCGAGCAGTGCTGCAATCTGAGTCAGATTCAGGATGGTTGAACTCTATCCCAGTGGGACTGGGAGAGTCTATCGTGACCACTGATGAAGTGACTGTTGTTCGCAAATCATCAAGCACACCAAGTTTAAAAGAGGAGGAAAATAACAGCACAGCATCAGTTTGGCCAACTTCAAGGTGGAGCTTGAAAACAGACTTGCAAGCTCTTTCAAATGCAGCATCTATTACCAGACCAATCTTTGATGGCTTGCCGAAACCAATAACTGGCCGCTGGAAAACTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4782 GRAM

Protein Analysis

347

Amino Acids

37.33

Weight (kDa)

9.3

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50170
fragaria_vesca FvH4_5g06260 FvH4_5g06260 FvH4_5g06260
malus_domestica MD06G1166100.v1.1
prunus_persica Prupe.5G166000_v2.0.a1
pyrus_communis pycom06g14860
rosa_chinensis RchiOBHm_Chr7g0192601
rosa_laevigata RLG00000004348
rosa_multiflora Rmu_sc0004161.1_g000002
rosa_roxburghii Rroxscaffold_3G00262850
rosa_rugosa Rorug07G0002600 Rorug07G0002700 Rorug07G0002800
rosa_samantha Rh7AG127000 Rh7BG129600 Rh7CG131100 Rh7CG132000 Rh7DG130600
rosa_wichuraiana Rw7G010940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1016
AciI CCGC 1 cut(s) 1021
AcoI YGGCCR 3 cut(s) 271, 917, 1018
AcuI CTGAAG 2 cut(s) 420, 657
AcyI GRCGYC 1 cut(s) 625
AfiI CCNNNNNNNGG 2 cut(s) 197, 1016
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 3 cut(s) 317, 936, 956
AluI AGCT 3 cut(s) 317, 936, 956
Alw21I GWGCWC 3 cut(s) 63, 319, 350
Alw26I GTCTC 1 cut(s) 73
AoxI GGCC 5 cut(s) 271, 468, 740, 917, 1018
ApeKI GCWGC 2 cut(s) 766, 968
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 205
AsuHPI GGTGA 4 cut(s) 201, 465, 488, 605
AxyI CCTNAGG 1 cut(s) 262
BalI TGGCCA 2 cut(s) 273, 919
BanII GRGCYC 2 cut(s) 319, 395
BbsI GAAGAC 3 cut(s) 182, 208, 447
Bbv12I GWGCWC 3 cut(s) 63, 319, 350
BbvI GCAGC 2 cut(s) 753, 980
BccI CCATC 7 cut(s) 70, 220, 406, 446, 578, 783, 989
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 510
BfmI CTRYAG 3 cut(s) 150, 303, 336
BglII AGATCT 1 cut(s) 154
BisI GCNGC 3 cut(s) 767, 969, 1021
BlsI GCNGC 3 cut(s) 768, 970, 1022
Bme1390I CCNGG 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 198
BmrI ACTGGG 2 cut(s) 800, 824
BmsI GCATC 2 cut(s) 917, 980
BmuI ACTGGG 2 cut(s) 800, 824
BpiI GAAGAC 3 cut(s) 182, 208, 447
BsaHI GRCGYC 1 cut(s) 625
BsaJI CCNNGG 2 cut(s) 321, 579
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 688, 718
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 1016
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 806, 819, 1021
Bse21I CCTNAGG 1 cut(s) 262
Bse3DI GCAATG 2 cut(s) 348, 555
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 321, 579
BseGI GGATG 5 cut(s) 141, 257, 589, 675, 794
BseLI CCNNNNNNNGG 2 cut(s) 197, 1016
BseMI GCAATG 2 cut(s) 348, 555
BseMII CTCAG 4 cut(s) 276, 528, 723, 765
BseNI ACTGG 3 cut(s) 806, 819, 1021
BseRI GAGGAG 3 cut(s) 51, 54, 902
BseXI GCAGC 2 cut(s) 753, 980
BshFI GGCC 5 cut(s) 273, 470, 742, 919, 1020
BsiHKAI GWGCWC 3 cut(s) 63, 319, 350
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 2 cut(s) 197, 1016
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 825
BsnI GGCC 5 cut(s) 273, 470, 742, 919, 1020
Bsp1286I GDGCHC 4 cut(s) 63, 319, 350, 395
Bsp143I GATC 2 cut(s) 154, 299
Bsp19I CCATGG 1 cut(s) 579
BspACI CCGC 1 cut(s) 1021
BspANI GGCC 5 cut(s) 273, 470, 742, 919, 1020
BspCNI CTCAG 4 cut(s) 275, 529, 722, 766
BsrDI GCAATG 2 cut(s) 348, 555
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 3 cut(s) 806, 819, 1021
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 321, 579
BssMI GATC 2 cut(s) 154, 299
BssNI GRCGYC 1 cut(s) 625
BssT1I CCWWGG 2 cut(s) 321, 579
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 850
BstACI GRCGYC 1 cut(s) 625
BstC8I GCNNGC 5 cut(s) 91, 275, 754, 954, 1001
BstDEI CTNAG 4 cut(s) 262, 537, 709, 774
BstDSI CCRYGG 1 cut(s) 579
BstENI CCTNNNNNAGG 1 cut(s) 195
BstF5I GGATG 5 cut(s) 141, 257, 589, 675, 794
BstKTI GATC 2 cut(s) 157, 302
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 154, 299
BstMWI GCNNNNNNNGC 3 cut(s) 95, 283, 758
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 3 cut(s) 150, 303, 336
BstV1I GCAGC 2 cut(s) 753, 980
BstV2I GAAGAC 3 cut(s) 182, 208, 447
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
Bsu36I CCTNAGG 1 cut(s) 262
BsuRI GGCC 5 cut(s) 273, 470, 742, 919, 1020
BtgI CCRYGG 1 cut(s) 579
BtsCI GGATG 5 cut(s) 141, 257, 589, 675, 794
BtsI GCAGTG 2 cut(s) 706, 768
BtsIMutI CAGTG 5 cut(s) 246, 706, 768, 813, 834
Cac8I GCNNGC 5 cut(s) 91, 275, 754, 954, 1001
Cfr10I RCCGGY 1 cut(s) 89
CseI GACGC 1 cut(s) 614
CviAII CATG 4 cut(s) 406, 505, 580, 736
DdeI CTNAG 4 cut(s) 262, 537, 709, 774
DpnI GATC 2 cut(s) 156, 301
DpnII GATC 2 cut(s) 154, 299
DraI TTTAAA 1 cut(s) 882
EaeI YGGCCR 3 cut(s) 271, 917, 1018
Ecl136II GAGCTC 1 cut(s) 317
Eco130I CCWWGG 2 cut(s) 321, 579
Eco147I AGGCCT 1 cut(s) 470
Eco24I GRGCYC 2 cut(s) 319, 395
Eco53kI GAGCTC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 420, 657
Eco81I CCTNAGG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 317
EcoNI CCTNNNNNAGG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 321, 579
EcoT38I GRGCYC 2 cut(s) 319, 395
ErhI CCWWGG 2 cut(s) 321, 579
FaeI CATG 4 cut(s) 409, 508, 583, 739
FaiI YATR 9 cut(s) 56, 366, 407, 501, 506, 561, 563, 581, 737
FaqI GGGAC 1 cut(s) 825
FatI CATG 4 cut(s) 405, 504, 579, 735
Fnu4HI GCNGC 3 cut(s) 767, 969, 1021
FokI GGATG 5 cut(s) 148, 244, 596, 682, 801
FriOI GRGCYC 2 cut(s) 319, 395
Fsp4HI GCNGC 3 cut(s) 767, 969, 1021
FspBI CTAG 1 cut(s) 510
GluI GCNGC 3 cut(s) 767, 969, 1021
HaeIII GGCC 5 cut(s) 273, 470, 742, 919, 1020
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 614
Hin1I GRCGYC 1 cut(s) 625
Hin1II CATG 4 cut(s) 409, 508, 583, 739
HinfI GANTC 5 cut(s) 485, 575, 776, 782, 821
HpaII CCGG 1 cut(s) 90
HphI GGTGA 4 cut(s) 201, 465, 488, 605
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 9 cut(s) 299, 387, 439, 484, 604, 620, 630, 775, 781
Hpy188III TCNNGA 3 cut(s) 312, 786, 829
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 3 cut(s) 18, 395, 615
HpyCH4III ACNGT 1 cut(s) 850
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 6 cut(s) 548, 565, 572, 769, 952, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 283, 758
HpyF3I CTNAG 4 cut(s) 262, 537, 709, 774
HpySE526I ACGT 1 cut(s) 514
Hsp92I GRCGYC 1 cut(s) 625
Hsp92II CATG 4 cut(s) 409, 508, 583, 739
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 154, 299
LmnI GCTCC 3 cut(s) 322, 696, 933
Lsp1109I GCAGC 2 cut(s) 753, 980
LweI GCATC 2 cut(s) 917, 980
MaeI CTAG 1 cut(s) 510
MaeII ACGT 1 cut(s) 514
MaeIII GTNAC 5 cut(s) 331, 494, 655, 829, 844
MalI GATC 2 cut(s) 156, 301
MboI GATC 2 cut(s) 154, 299
MboII GAAGA 4 cut(s) 149, 187, 213, 452
MfeI CAATTG 1 cut(s) 530
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 4 cut(s) 63, 319, 350, 395
MlsI TGGCCA 2 cut(s) 273, 919
MluCI AATT 3 cut(s) 49, 280, 530
MluNI TGGCCA 2 cut(s) 273, 919
MlyI GAGTC 3 cut(s) 569, 785, 830
Mox20I TGGCCA 2 cut(s) 273, 919
MreI CGCCGGCG 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 205
MscI TGGCCA 2 cut(s) 273, 919
MseI TTAA 3 cut(s) 129, 674, 881
MslI CAYNNNNRTG 1 cut(s) 410
Msp20I TGGCCA 2 cut(s) 273, 919
MspA1I CMGCKG 1 cut(s) 1023
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 530
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 95, 283, 758
NaeI GCCGGC 1 cut(s) 91
NcoI CCATGG 1 cut(s) 579
NdeII GATC 2 cut(s) 154, 299
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 4 cut(s) 409, 508, 583, 739
NmeAIII GCCGAG 1 cut(s) 782
NmuCI GTSAC 5 cut(s) 331, 494, 655, 829, 844
PceI AGGCCT 1 cut(s) 470
PdiI GCCGGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 485, 782
PflMI CCANNNNNTGG 1 cut(s) 1016
PkrI GCNGC 3 cut(s) 768, 970, 1022
PleI GAGTC 3 cut(s) 569, 784, 829
PpsI GAGTC 3 cut(s) 569, 784, 829
Psp124BI GAGCTC 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 410
SacI GAGCTC 1 cut(s) 319
SaqAI TTAA 3 cut(s) 129, 674, 881
SatI GCNGC 3 cut(s) 767, 969, 1021
Sau3AI GATC 2 cut(s) 154, 299
SchI GAGTC 3 cut(s) 569, 785, 830
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 4 cut(s) 63, 319, 350, 395
SfaNI GCATC 2 cut(s) 917, 980
SfcI CTRYAG 3 cut(s) 150, 303, 336
SgrAI CRCCGGYG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 3 cut(s) 49, 280, 530
SseBI AGGCCT 1 cut(s) 470
SsiI CCGC 1 cut(s) 1021
SspMI CTAG 1 cut(s) 510
SstI GAGCTC 1 cut(s) 319
StuI AGGCCT 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 2 cut(s) 321, 579
TaaI ACNGT 1 cut(s) 850
TaiI ACGT 1 cut(s) 517
TaqI TCGA 1 cut(s) 447
TasI AATT 3 cut(s) 49, 280, 530
TauI GCSGC 1 cut(s) 1023
TfiI GAWTC 2 cut(s) 485, 782
Tru1I TTAA 3 cut(s) 129, 674, 881
Tru9I TTAA 3 cut(s) 129, 674, 881
TscAI CASTG 5 cut(s) 253, 706, 768, 813, 841
TseFI GTSAC 5 cut(s) 331, 494, 655, 829, 844
TseI GCWGC 2 cut(s) 766, 968
Tsp45I GTSAC 5 cut(s) 331, 494, 655, 829, 844
TspDTI ATGAA 2 cut(s) 152, 855
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 5 cut(s) 253, 706, 768, 813, 841
Van91I CCANNNNNTGG 1 cut(s) 1016
XagI CCTNNNNNAGG 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 927
XmnI GAANNNNTTC 1 cut(s) 205
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.