DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G12580 |
| fragaria_vesca | FvH4_5g01410 FvH4_5g01410 FvH4_5g01410 FvH4_7g28910 FvH4_7g28910 FvH4_7g28910 |
| malus_domestica | MD01G1195700.v1.1 MD04G1068700.v1.1 MD07G1262500.v1.1 |
| prunus_persica | Prupe.2G289000_v2.0.a1 Prupe.5G089500_v2.0.a1 Prupe.5G089500_v2.0.a1 |
| pyrus_communis | pycom01g20630 pycom04g06200 pycom07g24150 |
| rosa_chinensis | RchiOBHm_Chr1g0376571 RchiOBHm_Chr7g0199461 |
| rosa_laevigata | RLG00000003791 RLG00000026597 |
| rosa_multiflora | Rmu_sc0001308.1_g000003 Rmu_sc0003890.1_g000006 Rmu_sc0005594.1_g000017 |
| rosa_roxburghii | Rroxscaffold_3G00256710 Rroxscaffold_4G00281980 |
| rosa_rugosa | Rorug01G0396500 Rorug07G0054100 Rorug07G0054200 Rorug07G0054200 Rorug07G0054300 |
| rosa_samantha | Rh1AG412300 Rh1BG372700 Rh1CG386600 Rh1DG403600 Rh7AG179200 Rh7BG182600 Rh7DG182100 |
| rosa_wichuraiana | Rw1G036210 Rw7G015740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 166 |
| Acc36I | ACCTGC | 1 cut(s) | 166 |
| AciI | CCGC | 3 cut(s) | 60, 81, 161 |
| AclWI | GGATC | 1 cut(s) | 267 |
| AcoI | YGGCCR | 2 cut(s) | 232, 331 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 91, 296 |
| AgsI | TTSAA | 3 cut(s) | 98, 125, 210 |
| AjnI | CCWGG | 2 cut(s) | 196, 289 |
| AluBI | AGCT | 2 cut(s) | 227, 287 |
| AluI | AGCT | 2 cut(s) | 227, 287 |
| Alw26I | GTCTC | 1 cut(s) | 173 |
| AlwI | GGATC | 1 cut(s) | 267 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 290 |
| AoxI | GGCC | 2 cut(s) | 232, 331 |
| ApeKI | GCWGC | 2 cut(s) | 146, 149 |
| AspS9I | GGNCC | 1 cut(s) | 277 |
| AsuHPI | GGTGA | 1 cut(s) | 74 |
| AvaII | GGWCC | 1 cut(s) | 277 |
| AxyI | CCTNAGG | 1 cut(s) | 105 |
| BalI | TGGCCA | 2 cut(s) | 234, 333 |
| BbvI | GCAGC | 2 cut(s) | 133, 161 |
| BccI | CCATC | 2 cut(s) | 224, 274 |
| BciT130I | CCWGG | 2 cut(s) | 198, 291 |
| BclI | TGATCA | 1 cut(s) | 168 |
| BcoDI | GTCTC | 1 cut(s) | 173 |
| BfaI | CTAG | 1 cut(s) | 308 |
| BfmI | CTRYAG | 1 cut(s) | 147 |
| BfuAI | ACCTGC | 1 cut(s) | 166 |
| BisI | GCNGC | 2 cut(s) | 147, 150 |
| BlsI | GCNGC | 2 cut(s) | 148, 151 |
| Bme1390I | CCNGG | 2 cut(s) | 198, 291 |
| Bme18I | GGWCC | 1 cut(s) | 277 |
| BmgT120I | GGNCC | 1 cut(s) | 277 |
| BmrFI | CCNGG | 2 cut(s) | 198, 291 |
| BpmI | CTGGAG | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 1 cut(s) | 241 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 91, 296 |
| Bse1I | ACTGG | 1 cut(s) | 334 |
| Bse21I | CCTNAGG | 1 cut(s) | 105 |
| BseBI | CCWGG | 2 cut(s) | 198, 291 |
| BseDI | CCNNGG | 1 cut(s) | 241 |
| BseGI | GGATG | 1 cut(s) | 266 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 91, 296 |
| BseMII | CTCAG | 1 cut(s) | 146 |
| BseNI | ACTGG | 1 cut(s) | 334 |
| BseXI | GCAGC | 2 cut(s) | 133, 161 |
| BshFI | GGCC | 2 cut(s) | 234, 333 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 91, 296 |
| BsmAI | GTCTC | 1 cut(s) | 173 |
| BsnI | GGCC | 2 cut(s) | 234, 333 |
| Bsp143I | GATC | 2 cut(s) | 168, 259 |
| BspACI | CCGC | 3 cut(s) | 60, 81, 161 |
| BspANI | GGCC | 2 cut(s) | 234, 333 |
| BspCNI | CTCAG | 1 cut(s) | 145 |
| BspMAI | CTGCAG | 1 cut(s) | 151 |
| BspMI | ACCTGC | 1 cut(s) | 166 |
| BspPI | GGATC | 1 cut(s) | 267 |
| BsrI | ACTGG | 1 cut(s) | 334 |
| BssECI | CCNNGG | 1 cut(s) | 241 |
| BssMI | GATC | 2 cut(s) | 168, 259 |
| Bst2UI | CCWGG | 2 cut(s) | 198, 291 |
| Bst4CI | ACNGT | 1 cut(s) | 242 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 158 |
| BstC8I | GCNNGC | 1 cut(s) | 190 |
| BstDEI | CTNAG | 2 cut(s) | 105, 132 |
| BstDSI | CCRYGG | 1 cut(s) | 241 |
| BstF5I | GGATG | 1 cut(s) | 266 |
| BstKTI | GATC | 2 cut(s) | 171, 262 |
| BstMAI | GTCTC | 1 cut(s) | 173 |
| BstMBI | GATC | 2 cut(s) | 168, 259 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 158, 198 |
| BstNI | CCWGG | 2 cut(s) | 198, 291 |
| BstSCI | CCNGG | 2 cut(s) | 196, 289 |
| BstSFI | CTRYAG | 1 cut(s) | 147 |
| BstV1I | GCAGC | 2 cut(s) | 133, 161 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 242 |
| Bsu36I | CCTNAGG | 1 cut(s) | 105 |
| BsuRI | GGCC | 2 cut(s) | 234, 333 |
| BtgI | CCRYGG | 1 cut(s) | 241 |
| BtsCI | GGATG | 1 cut(s) | 266 |
| BveI | ACCTGC | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 1 cut(s) | 190 |
| CaiI | CAGNNNCTG | 1 cut(s) | 290 |
| Cfr13I | GGNCC | 1 cut(s) | 277 |
| CviJI | RGCY | 6 cut(s) | 45, 139, 227, 234, 287, 333 |
| CviKI_1 | RGCY | 6 cut(s) | 45, 139, 227, 234, 287, 333 |
| DdeI | CTNAG | 2 cut(s) | 105, 132 |
| DpnI | GATC | 2 cut(s) | 170, 261 |
| DpnII | GATC | 2 cut(s) | 168, 259 |
| EaeI | YGGCCR | 2 cut(s) | 232, 331 |
| Eco47I | GGWCC | 1 cut(s) | 277 |
| Eco81I | CCTNAGG | 1 cut(s) | 105 |
| EcoRII | CCWGG | 2 cut(s) | 196, 289 |
| FauI | CCCGC | 1 cut(s) | 88 |
| FbaI | TGATCA | 1 cut(s) | 168 |
| Fnu4HI | GCNGC | 2 cut(s) | 147, 150 |
| FokI | GGATG | 1 cut(s) | 253 |
| Fsp4HI | GCNGC | 2 cut(s) | 147, 150 |
| FspBI | CTAG | 1 cut(s) | 308 |
| GluI | GCNGC | 2 cut(s) | 147, 150 |
| GsuI | CTGGAG | 1 cut(s) | 168 |
| HaeIII | GGCC | 2 cut(s) | 234, 333 |
| HinfI | GANTC | 3 cut(s) | 12, 76, 181 |
| HphI | GGTGA | 1 cut(s) | 74 |
| Hpy188I | TCNGA | 3 cut(s) | 75, 135, 224 |
| Hpy188III | TCNNGA | 1 cut(s) | 308 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 1 cut(s) | 62 |
| HpyCH4III | ACNGT | 1 cut(s) | 242 |
| HpyCH4V | TGCA | 1 cut(s) | 149 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 158, 198 |
| HpyF3I | CTNAG | 2 cut(s) | 105, 132 |
| Ksp22I | TGATCA | 1 cut(s) | 168 |
| Kzo9I | GATC | 2 cut(s) | 168, 259 |
| LmnI | GCTCC | 1 cut(s) | 292 |
| Lsp1109I | GCAGC | 2 cut(s) | 133, 161 |
| MaeI | CTAG | 1 cut(s) | 308 |
| MalI | GATC | 2 cut(s) | 170, 261 |
| MboI | GATC | 2 cut(s) | 168, 259 |
| MboII | GAAGA | 1 cut(s) | 77 |
| MlsI | TGGCCA | 2 cut(s) | 234, 333 |
| MluNI | TGGCCA | 2 cut(s) | 234, 333 |
| MlyI | GAGTC | 2 cut(s) | 21, 175 |
| MnlI | CCTC | 6 cut(s) | 17, 23, 50, 112, 263, 317 |
| Mox20I | TGGCCA | 2 cut(s) | 234, 333 |
| MscI | TGGCCA | 2 cut(s) | 234, 333 |
| Msp20I | TGGCCA | 2 cut(s) | 234, 333 |
| MspR9I | CCNGG | 2 cut(s) | 198, 291 |
| MvaI | CCWGG | 2 cut(s) | 198, 291 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 158, 198 |
| NdeII | GATC | 2 cut(s) | 168, 259 |
| PaqCI | CACCTGC | 1 cut(s) | 166 |
| PfeI | GAWTC | 1 cut(s) | 76 |
| PkrI | GCNGC | 2 cut(s) | 148, 151 |
| PleI | GAGTC | 2 cut(s) | 20, 175 |
| PpsI | GAGTC | 2 cut(s) | 20, 175 |
| Psp6I | CCWGG | 2 cut(s) | 196, 289 |
| PspGI | CCWGG | 2 cut(s) | 196, 289 |
| PspPI | GGNCC | 1 cut(s) | 277 |
| PstI | CTGCAG | 1 cut(s) | 151 |
| PstNI | CAGNNNCTG | 1 cut(s) | 290 |
| SatI | GCNGC | 2 cut(s) | 147, 150 |
| Sau3AI | GATC | 2 cut(s) | 168, 259 |
| Sau96I | GGNCC | 1 cut(s) | 277 |
| SchI | GAGTC | 2 cut(s) | 21, 175 |
| ScrFI | CCNGG | 2 cut(s) | 198, 291 |
| SfcI | CTRYAG | 1 cut(s) | 147 |
| SinI | GGWCC | 1 cut(s) | 277 |
| SsiI | CCGC | 3 cut(s) | 60, 81, 161 |
| SspMI | CTAG | 1 cut(s) | 308 |
| StyD4I | CCNGG | 2 cut(s) | 196, 289 |
| TaaI | ACNGT | 1 cut(s) | 242 |
| TfiI | GAWTC | 1 cut(s) | 76 |
| TseI | GCWGC | 2 cut(s) | 146, 149 |
| TspDTI | ATGAA | 1 cut(s) | 291 |
| TspGWI | ACGGA | 1 cut(s) | 272 |
| VpaK11BI | GGWCC | 1 cut(s) | 277 |
| XbaI | TCTAGA | 1 cut(s) | 307 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 287 |
| XspI | CTAG | 1 cut(s) | 308 |