Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002852

Physical Location & Seq

Genomic Coordinates Reverse (-)

64517834 .. 64518886

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG412300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTGTTGCCAAGAGCAGCAGTAACAGGGAACCATCAACATGGCTATGCAATTCTTACAAAGTCTCGAGCTTAACGTCCTCCATCTTGGATGCAAATGAGACCTCAAATCTAAAAGACCAGTATATTCTTGGAGAGCAATTAGGTTGGGGTCAATTTGGTGTTATTAGGGTGTGCACTGATAAGTTTACGGGAGAGGTTTTGGCATGCAAATCAATAGCTAAAGATCGATTAGTGACCTCAGATGATGTCAGTAGCATCAAGCTTGAGATTGAAATCATGACCAAGTTGTCTGGGCACCCAAATGTTGTAGATCTCAAGGCGGTGTATGAAGAGGAACAGTACGTTCATTTGGTGATGGAGCTCTGTGCAGGAGGGGAGCTTTTCCACCAGTTAGAGAAGCACGGGCATTTCTCTGAATCTGATGCAAGGGTTCTCTTTAGGCATCTGATTCAGGTAGTTTTATACTGTCATGAAAATGGGGTTGTCCACAGAGATTTGAAGCCTGAGAATATTCTGTTGGCCACAAAAGCCTCCTCATCTCCTATAAAATTGGCAGACTTTGGTCTTGCAACTTACATCAAGCCTGGCCAGAGTTTGCACGGTTTGGTGGGAAGTCCGTTTTATATAGCGCCTGAGGTACTTGCTGGGGGCTATAACCAAGCTGCTGATGTTTGGAGTGCAGGGGTAATTCTTTACATTCTTCTCAGCGGAATGCCACCATTTTGGGGGAAGACAAAGTCAAGCATATTTGATGCTGTTAGGACAGCTGATCTGAGGTTCCCATCTGATCCCTGGGATGGCATTACTGAATCAGCTAATGATTTGATTCGAGGAATGCTCTGTAAAGATCCTTCTAAAAGGCTCACCGCTCACCAGGTTTTAGGTAGGTTAAATAATGATTGCAGTAACAGAGTTTGCTCAAATGCTGATCTCAGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04012 ko04020 ko04024 ko04066 ko04114 ko04217 ko04261 ko04310 ko04360 ko04713 ko04720 ko04722 ko04725 ko04728 ko04740 ko04745 ko04750 ko04911 ko04912 ko04916 ko04921 ko04922 ko04925 ko04934 ko04971 ko05031 ko05152 ko05200 ko05205 ko05214 map04012 map04020 map04024 map04066 map04114 map04217 map04261 map04310 map04360 map04713 map04720 map04722 map04725 map04728 map04740 map04745 map04750 map04911 map04912 map04916 map04921 map04922 map04925 map04934 map04971 map05031 map05152 map05200 map05205 map05214

Pfam Domains

Protein Families

Pkinase

Protein Analysis

314

Amino Acids

34.58

Weight (kDa)

6.06

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	43 - 295	2.9e-72	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	44 - 296	3.4e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12580
fragaria_vesca	FvH4_5g01410 FvH4_5g01410 FvH4_5g01410 FvH4_7g28910 FvH4_7g28910 FvH4_7g28910
malus_domestica	MD01G1195700.v1.1 MD04G1068700.v1.1 MD07G1262500.v1.1
prunus_persica	Prupe.2G289000_v2.0.a1 Prupe.5G089500_v2.0.a1 Prupe.5G089500_v2.0.a1
pyrus_communis	pycom01g20630 pycom04g06200 pycom07g24150
rosa_chinensis	RchiOBHm_Chr1g0376571 RchiOBHm_Chr7g0199461
rosa_laevigata	RLG00000003791 RLG00000026597
rosa_multiflora	Rmu_sc0001308.1_g000003 Rmu_sc0003890.1_g000006 Rmu_sc0005594.1_g000017
rosa_roxburghii	Rroxscaffold_3G00256710 Rroxscaffold_4G00281980
rosa_rugosa	Rorug01G0396500 Rorug07G0054100 Rorug07G0054200 Rorug07G0054200 Rorug07G0054300
rosa_samantha	Rh1AG412300 Rh1BG372700 Rh1CG386600 Rh1DG403600 Rh7AG179200 Rh7BG182600 Rh7DG182100
rosa_wichuraiana	Rw1G036210 Rw7G015740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	872
AciI	CCGC	3 cut(s)	323, 711, 870
AclWI	GGATC	2 cut(s)	785, 845
AcoI	YGGCCR	2 cut(s)	522, 589
AfaI	GTAC	2 cut(s)	344, 642
AfiI	CCNNNNNNNGG	2 cut(s)	728, 800
AgsI	TTSAA	2 cut(s)	275, 502
AjnI	CCWGG	3 cut(s)	586, 794, 876
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	8 cut(s)	72, 221, 265, 364, 382, 665, 770, 818
AluI	AGCT	8 cut(s)	72, 221, 265, 364, 382, 665, 770, 818
Alw21I	GWGCWC	2 cut(s)	179, 366
Alw26I	GTCTC	2 cut(s)	70, 95
Alw44I	GTGCAC	1 cut(s)	175
AlwI	GGATC	2 cut(s)	785, 845
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	2 cut(s)	522, 589
ApaLI	GTGCAC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	18, 665
AspLEI	GCGC	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	367, 859, 866
AvaI	CYCGRG	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	636
BaeGI	GKGCMC	2 cut(s)	179, 300
BalI	TGGCCA	2 cut(s)	524, 591
BanI	GGYRCC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	366
BarI	GAAGNNNNNNTAC	2 cut(s)	838, 870
BbsI	GAAGAC	1 cut(s)	740
Bbv12I	GWGCWC	2 cut(s)	179, 366
BbvI	GCAGC	2 cut(s)	30, 652
BccI	CCATC	5 cut(s)	43, 92, 352, 793, 794
BciT130I	CCWGG	3 cut(s)	588, 796, 878
BcoDI	GTCTC	2 cut(s)	70, 95
BfoI	RGCGCY	1 cut(s)	635
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	2 cut(s)	19, 666
BlsI	GCNGC	2 cut(s)	20, 667
Bme1390I	CCNGG	3 cut(s)	588, 796, 878
BmeT110I	CYCGRG	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	33, 299, 782
BmrFI	CCNGG	3 cut(s)	588, 796, 878
BmsI	GCATC	6 cut(s)	82, 267, 415, 454, 745, 929
BoxI	GACNNNNGTC	1 cut(s)	564
BpiI	GAAGAC	1 cut(s)	740
BplI	GAGNNNNNCTC	2 cut(s)	825, 857
BpuEI	CTTGAG	2 cut(s)	287, 302
Bsa29I	ATCGAT	1 cut(s)	229
BsaBI	GATNNNNATC	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	794, 795
Bsc4I	CCNNNNNNNGG	2 cut(s)	728, 800
Bse1I	ACTGG	2 cut(s)	121, 391
Bse21I	CCTNAGG	1 cut(s)	636
Bse8I	GATNNNNATC	1 cut(s)	275
BseBI	CCWGG	3 cut(s)	588, 796, 878
BseCI	ATCGAT	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	794, 795
BseGI	GGATG	2 cut(s)	97, 805
BseJI	GATNNNNATC	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	728, 800
BseMII	CTCAG	5 cut(s)	255, 498, 627, 721, 767
BseNI	ACTGG	2 cut(s)	121, 391
BseRI	GAGGAG	1 cut(s)	526
BseSI	GKGCMC	2 cut(s)	179, 300
BseXI	GCAGC	2 cut(s)	30, 652
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	2 cut(s)	390, 702
BshFI	GGCC	2 cut(s)	524, 591
BshNI	GGYRCC	1 cut(s)	297
BshVI	ATCGAT	1 cut(s)	229
BsiHKAI	GWGCWC	2 cut(s)	179, 366
BsiHKCI	CYCGRG	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	728, 800
BsmAI	GTCTC	2 cut(s)	70, 95
BsmI	GAATGC	2 cut(s)	720, 843
BsnI	GGCC	2 cut(s)	524, 591
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	3 cut(s)	179, 300, 366
Bsp143I	GATC	6 cut(s)	226, 313, 772, 790, 850, 931
BspACI	CCGC	3 cut(s)	323, 711, 870
BspANI	GGCC	2 cut(s)	524, 591
BspCNI	CTCAG	5 cut(s)	254, 499, 628, 720, 768
BspDI	ATCGAT	1 cut(s)	229
BspHI	TCATGA	2 cut(s)	279, 472
BspLI	GGNNCC	3 cut(s)	33, 299, 782
BspPI	GGATC	2 cut(s)	785, 845
BspT107I	GGYRCC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	872
BsrI	ACTGG	2 cut(s)	121, 391
BssECI	CCNNGG	2 cut(s)	794, 795
BssMI	GATC	6 cut(s)	226, 313, 772, 790, 850, 931
Bst2UI	CCWGG	3 cut(s)	588, 796, 878
Bst4CI	ACNGT	3 cut(s)	342, 470, 605
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	6 cut(s)	241, 507, 636, 707, 776, 935
BstF5I	GGATG	2 cut(s)	97, 805
BstH2I	RGCGCY	1 cut(s)	635
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	6 cut(s)	229, 316, 775, 793, 853, 934
BstMAI	GTCTC	2 cut(s)	70, 95
BstMBI	GATC	6 cut(s)	226, 313, 772, 790, 850, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	3 cut(s)	588, 796, 878
BstNSI	RCATGY	1 cut(s)	210
BstPAI	GACNNNNGTC	1 cut(s)	564
BstSCI	CCNGG	3 cut(s)	586, 794, 876
BstSLI	GKGCMC	2 cut(s)	179, 300
BstV1I	GCAGC	2 cut(s)	30, 652
BstV2I	GAAGAC	1 cut(s)	740
BstX2I	RGATCY	2 cut(s)	313, 850
BstXI	CCANNNNNNTGG	2 cut(s)	42, 726
BstYI	RGATCY	2 cut(s)	313, 850
Bsu15I	ATCGAT	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	636
BsuRI	GGCC	2 cut(s)	524, 591
BsuTUI	ATCGAT	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	97, 805
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	208
CciI	TCATGA	2 cut(s)	279, 472
CfoI	GCGC	1 cut(s)	634
ClaI	ATCGAT	1 cut(s)	229
CsiI	ACCWGGT	1 cut(s)	876
Csp6I	GTAC	2 cut(s)	343, 641
CviAII	CATG	4 cut(s)	42, 207, 280, 473
CviQI	GTAC	2 cut(s)	343, 641
DdeI	CTNAG	6 cut(s)	241, 507, 636, 707, 776, 935
DpnI	GATC	6 cut(s)	228, 315, 774, 792, 852, 933
DpnII	GATC	6 cut(s)	226, 313, 772, 790, 850, 931
DrdI	GACNNNNNNGTC	1 cut(s)	289
DseDI	GACNNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	522, 589
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	364
Eco81I	CCTNAGG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	364
EcoRII	CCWGG	3 cut(s)	586, 794, 876
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	4 cut(s)	45, 210, 283, 476
FatI	CATG	4 cut(s)	41, 206, 279, 472
Fnu4HI	GCNGC	2 cut(s)	19, 666
FokI	GGATG	2 cut(s)	104, 812
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	19, 666
GlaI	GCGC	1 cut(s)	633
GluI	GCNGC	2 cut(s)	19, 666
GsaI	CCCAGC	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	635
HaeIII	GGCC	2 cut(s)	524, 591
HhaI	GCGC	1 cut(s)	634
Hin1II	CATG	4 cut(s)	45, 210, 283, 476
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	4 cut(s)	419, 451, 812, 829
HphI	GGTGA	3 cut(s)	367, 859, 866
Hpy166II	GTNNAC	3 cut(s)	177, 189, 490
Hpy188I	TCNGA	7 cut(s)	244, 418, 424, 450, 777, 790, 938
Hpy188III	TCNNGA	3 cut(s)	67, 280, 473
Hpy8I	GTNNAC	3 cut(s)	177, 189, 490
HpyAV	CCTTC	1 cut(s)	864
HpyCH4III	ACNGT	3 cut(s)	342, 470, 605
HpyCH4IV	ACGT	2 cut(s)	77, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	6 cut(s)	241, 507, 636, 707, 776, 935
HpySE526I	ACGT	2 cut(s)	77, 345
Hsp92II	CATG	4 cut(s)	45, 210, 283, 476
HspAI	GCGC	1 cut(s)	632
Kzo9I	GATC	6 cut(s)	226, 313, 772, 790, 850, 931
LmnI	GCTCC	2 cut(s)	361, 379
Lsp1109I	GCAGC	2 cut(s)	30, 652
LweI	GCATC	6 cut(s)	82, 267, 415, 454, 745, 929
MabI	ACCWGGT	1 cut(s)	876
MaeII	ACGT	2 cut(s)	77, 345
MaeIII	GTNAC	3 cut(s)	23, 235, 908
MalI	GATC	6 cut(s)	228, 315, 774, 792, 852, 933
MbiI	CCGCTC	1 cut(s)	872
MboI	GATC	6 cut(s)	226, 313, 772, 790, 850, 931
MboII	GAAGA	3 cut(s)	344, 695, 745
MflI	RGATCY	2 cut(s)	313, 850
MhlI	GDGCHC	3 cut(s)	179, 300, 366
MlsI	TGGCCA	2 cut(s)	524, 591
MluCI	AATT	5 cut(s)	52, 140, 155, 551, 690
MluNI	TGGCCA	2 cut(s)	524, 591
Mox20I	TGGCCA	2 cut(s)	524, 591
MscI	TGGCCA	2 cut(s)	524, 591
MseI	TTAA	2 cut(s)	74, 893
MslI	CAYNNNNRTG	4 cut(s)	40, 46, 303, 477
Msp20I	TGGCCA	2 cut(s)	524, 591
MspA1I	CMGCKG	2 cut(s)	711, 770
MspR9I	CCNGG	3 cut(s)	588, 796, 878
Mva1269I	GAATGC	2 cut(s)	720, 843
MvaI	CCWGG	3 cut(s)	588, 796, 878
MwoI	GCNNNNNNNGC	1 cut(s)	530
NdeII	GATC	6 cut(s)	226, 313, 772, 790, 850, 931
NlaIII	CATG	4 cut(s)	45, 210, 283, 476
NlaIV	GGNNCC	3 cut(s)	33, 299, 782
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	67
PagI	TCATGA	2 cut(s)	279, 472
PasI	CCCWGGG	1 cut(s)	795
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PctI	GAATGC	2 cut(s)	720, 843
PfeI	GAWTC	4 cut(s)	419, 451, 812, 829
PflFI	GACNNNGTC	1 cut(s)	739
PkrI	GCNGC	2 cut(s)	20, 667
PshAI	GACNNNNGTC	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	366
Psp6I	CCWGG	3 cut(s)	586, 794, 876
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	3 cut(s)	586, 794, 876
PspN4I	GGNNCC	3 cut(s)	33, 299, 782
PsuI	RGATCY	2 cut(s)	313, 850
PsyI	GACNNNGTC	1 cut(s)	739
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	344, 642
RsaNI	GTAC	2 cut(s)	343, 641
RseI	CAYNNNNRTG	4 cut(s)	40, 46, 303, 477
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	74, 893
SatI	GCNGC	2 cut(s)	19, 666
Sau3AI	GATC	6 cut(s)	226, 313, 772, 790, 850, 931
ScrFI	CCNGG	3 cut(s)	588, 796, 878
SduI	GDGCHC	3 cut(s)	179, 300, 366
SexAI	ACCWGGT	1 cut(s)	876
SfaNI	GCATC	6 cut(s)	82, 267, 415, 454, 745, 929
Sfr274I	CTCGAG	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	67
SmiMI	CAYNNNNRTG	4 cut(s)	40, 46, 303, 477
SmlI	CTYRAG	3 cut(s)	67, 266, 317
SmoI	CTYRAG	3 cut(s)	67, 266, 317
SphI	GCATGC	1 cut(s)	210
Sse9I	AATT	5 cut(s)	52, 140, 155, 551, 690
SsiI	CCGC	3 cut(s)	323, 711, 870
SspI	AATATT	1 cut(s)	514
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	586, 794, 876
TaaI	ACNGT	3 cut(s)	342, 470, 605
TaiI	ACGT	2 cut(s)	80, 348
TaqI	TCGA	3 cut(s)	68, 229, 832
TasI	AATT	5 cut(s)	52, 140, 155, 551, 690
TfiI	GAWTC	4 cut(s)	419, 451, 812, 829
Tru1I	TTAA	2 cut(s)	74, 893
Tru9I	TTAA	2 cut(s)	74, 893
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	18, 665
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	338, 345, 489
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	1 cut(s)	184
Tth111I	GACNNNGTC	1 cut(s)	739
VneI	GTGCAC	1 cut(s)	175
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	2 cut(s)	128, 792
XhoI	CTCGAG	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.