Rh1BG182900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0016471
Physical Location & Seq
Reverse (-)
29259239 .. 29265845
6607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG182900.1

Sequence Viewer

Length: 348 bp
ATGTGGGAGGGTGCAGGTTTTATCAGGGAAGAAGGGTACGTAGAATATTGGGGAGCATATAATTATGCTTGGCGTGATGAAGCGGCTGTTGGAAATCGGGCATATTCGTCGAGACTCGAGACCATGACTCCGGTGGTTAGGGCTCGTTCGACAGTACCAAATTTGAGTTGGTCGTCATTAAAGCCGAAGTCTACACTTGCCGGTGAGTCACTTCCTGTGACCAAAGGCCCTGGTAGATTTCCAAGGACCGTCTCCTTGATGCTCTGTTTGGCTGCTCAGTCGTCGATGAAATTGATGAAAACTCGGATCAATGTGATTTTCAATATTACCTACAAATTTCTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.0

Weight (kDa)

9.94

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 191
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 2 cut(s) 160, 335
AfaI GTAC 2 cut(s) 38, 156
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 229
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
Alw26I GTCTC 3 cut(s) 106, 113, 256
AlwI GGATC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 2 cut(s) 160, 335
AspS9I GGNCC 2 cut(s) 227, 246
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 259
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 106, 113, 256
BfuAI ACCTGC 1 cut(s) 5
BisI GCNGC 2 cut(s) 84, 273
BlsI GCNGC 2 cut(s) 85, 274
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 246
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 227, 246
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 229, 242
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bse118I RCCGGY 1 cut(s) 200
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 229, 242
BseMII CTCAG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 131, 201
BsmAI GTCTC 3 cut(s) 106, 113, 256
BsmBI CGTCTC 1 cut(s) 256
BsnI GGCC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 5
BspPI GGATC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 229, 242
BssMI GATC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 154, 250
BstBAI YACGTR 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 276
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 3 cut(s) 106, 113, 256
BstMBI GATC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstSNI TACGTA 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 228
BveI ACCTGC 1 cut(s) 5
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 227, 246
Csp6I GTAC 2 cut(s) 37, 155
CviAII CATG 1 cut(s) 124
CviJI RGCY 5 cut(s) 86, 143, 184, 228, 272
CviKI_1 RGCY 5 cut(s) 86, 143, 184, 228, 272
CviQI GTAC 2 cut(s) 37, 155
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
Eco105I TACGTA 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 242
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 1 cut(s) 127
FaiI YATR 5 cut(s) 58, 60, 66, 103, 125
FatI CATG 1 cut(s) 123
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 84, 273
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 2 cut(s) 84, 273
GluI GCNGC 2 cut(s) 84, 273
HaeIII GGCC 1 cut(s) 228
HapII CCGG 2 cut(s) 131, 201
Hin1II CATG 1 cut(s) 127
HinfI GANTC 3 cut(s) 114, 127, 206
HpaII CCGG 2 cut(s) 131, 201
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 306, 342
Hpy188III TCNNGA 2 cut(s) 111, 118
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 2 cut(s) 112, 286
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 2 cut(s) 154, 250
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 6 cut(s) 10, 144, 214, 216, 228, 243
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 249
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 207, 217
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 4 cut(s) 61, 160, 290, 335
MlyI GAGTC 3 cut(s) 108, 121, 215
MmeI TCCRAC 1 cut(s) 70
MseI TTAA 1 cut(s) 179
MspI CCGG 2 cut(s) 131, 201
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
NdeII GATC 1 cut(s) 306
NlaIII CATG 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 207, 217
PaeR7I CTCGAG 1 cut(s) 116
PkrI GCNGC 2 cut(s) 85, 274
PleI GAGTC 3 cut(s) 108, 121, 214
PpsI GAGTC 3 cut(s) 108, 121, 214
Ppu21I YACGTR 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspPI GGNCC 2 cut(s) 227, 246
RsaI GTAC 2 cut(s) 38, 156
RsaNI GTAC 2 cut(s) 37, 155
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 2 cut(s) 84, 273
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 2 cut(s) 227, 246
SchI GAGTC 3 cut(s) 108, 121, 215
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 145
SetI ASST 3 cut(s) 19, 42, 332
SfaNI GCATC 1 cut(s) 249
Sfr274I CTCGAG 1 cut(s) 116
SinI GGWCC 1 cut(s) 246
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SnaBI TACGTA 1 cut(s) 40
Sse9I AATT 4 cut(s) 61, 160, 290, 335
SsiI CCGC 1 cut(s) 83
SspI AATATT 2 cut(s) 47, 325
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 2 cut(s) 154, 250
TaiI ACGT 1 cut(s) 42
TaqI TCGA 4 cut(s) 110, 117, 149, 284
TasI AATT 4 cut(s) 61, 160, 290, 335
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseFI GTSAC 2 cut(s) 207, 217
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 2 cut(s) 207, 217
TspDTI ATGAA 3 cut(s) 93, 302, 311
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 2 cut(s) 160, 335
XcmI CCANNNNNNNNNTGG 2 cut(s) 130, 165
XhoI CTCGAG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.