Rh6DG293800

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016471
Physical Location & Seq
Reverse (-)
49417623 .. 49428659
11037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG293800.1

Sequence Viewer

Length: 522 bp
ATGCAGAGCGTTGAGCCAACCAAGCACGACCATGGTCGCCGCTTCCCTACTCTCCATCGTTGTAGGCAAATTTGCTTGCCTTCGTTGGCAGTGCACAGGAGGAGGCCTCACGGCTTCCTTGTTCTTCGAGATGTTCGACTTTTTGAGGCAAAAGCTACCCCTTCCTTTCTCTCCTTCCATCTGATTTCGGTGTTGGCTATTCTTGCCGAGATGTGGATGCCCGTCTTGTTGGGTATAATTGCTCCAAGAATTTTATGGGATCCAGGGGTGGTGGCATGGATTCTGGTTGGCTTCTGGGTTGGAGAACTCCAATGGCTATGGTGGCTGCGCTGGATCGAGACAACCTTGATGCAGACGGCGCCGACGTCATCGCTAGTTTGGCTGATTGGGAGGTGGATTGAGGAGGATGCTTCCGTTCTTGTTCCTGCTGATATAAATCATATAATCAACATTAAGTTTGGGGATATTATTCCAGCACATGCTCGTCTCCTCAATGGTGATCCACTGAAATTGATCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

173

Amino Acids

19.98

Weight (kDa)

9.68

Isoelectric Point (pI)

66.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 358
AciI CCGC 1 cut(s) 40
AclWI GGATC 4 cut(s) 254, 267, 341, 494
AcsI RAATTY 2 cut(s) 69, 249
AcyI GRCGYC 2 cut(s) 359, 365
AfiI CCNNNNNNNGG 1 cut(s) 213
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 332, 491
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 4 cut(s) 254, 267, 341, 494
AoxI GGCC 1 cut(s) 104
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 2 cut(s) 69, 249
AspLEI GCGC 2 cut(s) 330, 361
AsuHPI GGTGA 1 cut(s) 509
BaeGI GKGCMC 1 cut(s) 96
BamHI GGATCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 63, 186
BceAI ACGGC 2 cut(s) 127, 372
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 513
BcoDI GTCTC 2 cut(s) 332, 491
BfaI CTAG 1 cut(s) 374
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 2 cut(s) 40, 326
BlsI GCNGC 2 cut(s) 41, 327
Bme1390I CCNGG 1 cut(s) 264
BmiI GGNNCC 2 cut(s) 261, 360
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 3 cut(s) 207, 339, 397
BoxI GACNNNNGTC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BsaBI GATNNNNATC 1 cut(s) 435
BsaHI GRCGYC 2 cut(s) 359, 365
BsaJI CCNNGG 2 cut(s) 31, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 31, 263
BseGI GGATG 2 cut(s) 222, 412
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 213
BseRI GAGGAG 3 cut(s) 115, 416, 479
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 312
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 2 cut(s) 332, 491
BsmBI CGTCTC 1 cut(s) 491
BsnI GGCC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 4 cut(s) 259, 333, 499, 513
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 261, 360
BspPI GGATC 4 cut(s) 254, 267, 341, 494
BspT107I GGYRCC 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 31, 263
BssMI GATC 4 cut(s) 259, 333, 499, 513
BssNI GRCGYC 2 cut(s) 359, 365
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 264
BstACI GRCGYC 2 cut(s) 359, 365
BstC8I GCNNGC 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 222, 412
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 330, 361
BstKTI GATC 4 cut(s) 262, 336, 502, 516
BstMAI GTCTC 2 cut(s) 332, 491
BstMBI GATC 4 cut(s) 259, 333, 499, 513
BstMWI GCNNNNNNNGC 5 cut(s) 22, 203, 322, 358, 379
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 482
BstPAI GACNNNNGTC 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 2 cut(s) 222, 412
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 503
Cac8I GCNNGC 1 cut(s) 77
CfoI GCGC 2 cut(s) 330, 361
CspCI CAANNNNNGTGG 1 cut(s) 492
CviAII CATG 3 cut(s) 32, 276, 479
CviJI RGCY 9 cut(s) 16, 106, 114, 155, 197, 291, 316, 325, 382
CviKI_1 RGCY 9 cut(s) 16, 106, 114, 155, 197, 291, 316, 325, 382
DinI GGCGCC 1 cut(s) 360
DpnI GATC 4 cut(s) 261, 335, 501, 515
DpnII GATC 4 cut(s) 259, 333, 499, 513
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 31
EgeI GGCGCC 1 cut(s) 360
EheI GGCGCC 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 3 cut(s) 35, 279, 482
FaiI YATR 9 cut(s) 33, 236, 256, 277, 319, 434, 441, 443, 480
FatI CATG 3 cut(s) 31, 275, 478
FbaI TGATCA 1 cut(s) 513
Fnu4HI GCNGC 2 cut(s) 40, 326
FokI GGATG 2 cut(s) 229, 419
Fsp4HI GCNGC 2 cut(s) 40, 326
FspBI CTAG 1 cut(s) 374
GlaI GCGC 2 cut(s) 329, 360
GluI GCNGC 2 cut(s) 40, 326
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 1 cut(s) 106
HhaI GCGC 2 cut(s) 330, 361
Hin1I GRCGYC 2 cut(s) 359, 365
Hin1II CATG 3 cut(s) 35, 279, 482
Hin6I GCGC 2 cut(s) 328, 359
HinP1I GCGC 2 cut(s) 328, 359
HinfI GANTC 1 cut(s) 280
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 128, 337
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 367
HpyAV CCTTC 3 cut(s) 90, 171, 184
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 3 cut(s) 4, 94, 352
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 203, 322, 358, 379
HpySE526I ACGT 1 cut(s) 365
Hsp92I GRCGYC 2 cut(s) 359, 365
Hsp92II CATG 3 cut(s) 35, 279, 482
HspAI GCGC 2 cut(s) 328, 359
KasI GGCGCC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 4 cut(s) 259, 333, 499, 513
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 9 cut(s) 82, 249, 269, 276, 280, 316, 438, 486, 502
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 3 cut(s) 207, 339, 397
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 365
MalI GATC 4 cut(s) 261, 335, 501, 515
MboI GATC 4 cut(s) 259, 333, 499, 513
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 4 cut(s) 69, 237, 249, 509
Mly113I GGCGCC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 8 cut(s) 93, 96, 117, 139, 384, 394, 397, 500
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 5 cut(s) 22, 203, 322, 358, 379
NarI GGCGCC 1 cut(s) 359
NcoI CCATGG 1 cut(s) 31
NdeII GATC 4 cut(s) 259, 333, 499, 513
NlaIII CATG 3 cut(s) 35, 279, 482
NlaIV GGNNCC 2 cut(s) 261, 360
NmeAIII GCCGAG 1 cut(s) 232
NspI RCATGY 1 cut(s) 482
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 2 cut(s) 133, 362
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 2 cut(s) 41, 327
PluTI GGCGCC 1 cut(s) 362
PshAI GACNNNNGTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 261, 360
PsuI RGATCY 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 2 cut(s) 40, 326
Sau3AI GATC 4 cut(s) 259, 333, 499, 513
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 157, 347, 368, 395, 521
SfaNI GCATC 3 cut(s) 207, 339, 397
SfoI GGCGCC 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 4 cut(s) 69, 237, 249, 509
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 1 cut(s) 40
SspDI GGCGCC 1 cut(s) 358
SspMI CTAG 1 cut(s) 374
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 31
TaiI ACGT 1 cut(s) 368
TaqI TCGA 3 cut(s) 127, 136, 336
TasI AATT 4 cut(s) 69, 237, 249, 509
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 2 cut(s) 96, 510
TseI GCWGC 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 2 cut(s) 96, 510
VneI GTGCAC 1 cut(s) 92
XapI RAATTY 2 cut(s) 69, 249
XceI RCATGY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 252
XspI CTAG 1 cut(s) 374
ZraI GACGTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.