Rh5DG237300

Plasma membrane ATPase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
27087325 .. 27090476
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG237300.1

Sequence Viewer

Length: 192 bp
ATGTTGAAGCTGTTCTTGGGTGGCTTGAGTTCTCTGAATTTGTGCGTGTATCAGATTGGGAGGTGGATTGAGGAGGATGCTTCCGTTCTTGTTCCTGCTGATATAAATCATATAATCAACATTAAGTTTGGGGATATTATTCCAGCACATGCTTGTCTCCTCGATGGTGATCCACTGAAATTGATCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

6.96

Weight (kDa)

5.39

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 37
AgsI TTSAA 1 cut(s) 7
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 179
BccI CCATC 1 cut(s) 158
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 161
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 46
BsaBI GATNNNNATC 2 cut(s) 105, 168
Bse8I GATNNNNATC 2 cut(s) 105, 168
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 2 cut(s) 105, 168
BseRI GAGGAG 2 cut(s) 86, 149
BsmAI GTCTC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 169, 183
BspPI GGATC 1 cut(s) 164
BssMI GATC 2 cut(s) 169, 183
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 2 cut(s) 172, 186
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 169, 183
BstNSI RCATGY 1 cut(s) 152
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 173
CspCI CAANNNNNGTGG 1 cut(s) 162
CviAII CATG 1 cut(s) 149
CviJI RGCY 2 cut(s) 10, 24
CviKI_1 RGCY 2 cut(s) 10, 24
DpnI GATC 2 cut(s) 171, 185
DpnII GATC 2 cut(s) 169, 183
FaeI CATG 1 cut(s) 152
FaiI YATR 4 cut(s) 104, 111, 113, 150
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 1 cut(s) 148
FbaI TGATCA 1 cut(s) 183
FokI GGATG 1 cut(s) 89
Hin1II CATG 1 cut(s) 152
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 36, 54
Hsp92II CATG 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 169, 183
LpnPI CCDG 3 cut(s) 108, 156, 172
LweI GCATC 1 cut(s) 67
MalI GATC 2 cut(s) 171, 185
MboI GATC 2 cut(s) 169, 183
MluCI AATT 2 cut(s) 37, 179
MnlI CCTC 4 cut(s) 54, 64, 67, 170
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 1 cut(s) 123
NdeII GATC 2 cut(s) 169, 183
NlaIII CATG 1 cut(s) 152
NspI RCATGY 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 123
Sau3AI GATC 2 cut(s) 169, 183
SetI ASST 3 cut(s) 12, 65, 191
SfaNI GCATC 1 cut(s) 67
SgeI CNNG 9 cut(s) 28, 37, 58, 101, 107, 155, 161, 165, 173
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 2 cut(s) 37, 179
TaqI TCGA 1 cut(s) 162
TasI AATT 2 cut(s) 37, 179
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 180
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.