Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016471

Physical Location & Seq

Genomic Coordinates Forward (+)

47458744 .. 47465791

Gene Structure 7048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG329900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGATCTATGTGTCTCAAAGCCAAATGAAACTATCAAAGTTCAGAAGAACAAGGTCGACAGAGTCGGCAAAGGCCGATGCCGGGGGAGGAAGAGTATGAAGATTGGGAGGTGGATTGAGGAGGATGCTTCCGTTCTTGTTCCTGCTGATATAAATCATATAATCAACATTAAGTTTGGGGATATTATTCCAGCACATGCTCGTCTCCTCGATGGTGATCCACTGAAATTGATCAGATTTCCAAGGACCGTCTCCTTGATGCTCTGTTTGGCTGCTCAGAATAGAAATAAGAAGATGGGCTACATGCACTTTGGCACGGTTAAGATATATGGTTCTGAGGCTGCCCTTATAAACACTTTAACAGAGACGTACGTTTCAAGATGGGACTATAAAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

133

Amino Acids

15.19

Weight (kDa)

9.93

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016471)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006736.1_g000032 Rmu_sc0024469.1_g000006
rosa_rugosa	Rorug05G0141100
rosa_samantha	Rh1BG182900 Rh1DG080100 Rh1DG212900 Rh2AG329900 Rh2DG558500 Rh3CG306900 Rh3DG303100 Rh4AG137400 Rh5DG237300 Rh6CG194500 Rh6CG310200 Rh6DG293800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	57
AclWI	GGATC	2 cut(s)	12, 212
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	378
Alw26I	GTCTC	4 cut(s)	19, 209, 256, 359
AlwI	GGATC	2 cut(s)	12, 212
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	272, 341
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	246
BarI	GAAGNNNNNNTAC	2 cut(s)	284, 316
BbvI	GCAGC	2 cut(s)	259, 328
BccI	CCATC	3 cut(s)	206, 289, 375
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	4 cut(s)	19, 209, 256, 359
BisI	GCNGC	2 cut(s)	273, 342
BlsI	GCNGC	2 cut(s)	274, 343
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	3 cut(s)	68, 115, 249
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	2 cut(s)	153, 216
BsaJI	CCNNGG	2 cut(s)	82, 242
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse8I	GATNNNNATC	2 cut(s)	153, 216
BseDI	CCNNGG	2 cut(s)	82, 242
BseGI	GGATG	1 cut(s)	130
BseJI	GATNNNNATC	2 cut(s)	153, 216
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	290, 327
BseRI	GAGGAG	2 cut(s)	134, 197
BseXI	GCAGC	2 cut(s)	259, 328
BshFI	GGCC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	82
BsiWI	CGTACG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	4 cut(s)	19, 209, 256, 359
BsmBI	CGTCTC	3 cut(s)	209, 256, 359
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	4, 217, 231
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	2 cut(s)	289, 328
BspPI	GGATC	2 cut(s)	12, 212
BssECI	CCNNGG	2 cut(s)	82, 242
BssMI	GATC	3 cut(s)	4, 217, 231
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	250, 319
Bst6I	CTCTTC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	276, 336
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	3 cut(s)	7, 220, 234
BstMAI	GTCTC	4 cut(s)	19, 209, 256, 359
BstMBI	GATC	3 cut(s)	4, 217, 231
BstNSI	RCATGY	2 cut(s)	200, 307
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	259, 328
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	370
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	2 cut(s)	197, 304
CviJI	RGCY	5 cut(s)	22, 75, 272, 300, 341
CviKI_1	RGCY	5 cut(s)	22, 75, 272, 300, 341
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	276, 336
DpnI	GATC	3 cut(s)	6, 219, 233
DpnII	GATC	3 cut(s)	4, 217, 231
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
Esp3I	CGTCTC	3 cut(s)	209, 256, 359
FaeI	CATG	2 cut(s)	200, 307
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	2 cut(s)	196, 303
FbaI	TGATCA	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	273, 342
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	273, 342
GluI	GCNGC	2 cut(s)	273, 342
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	2 cut(s)	200, 307
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	4 cut(s)	45, 236, 279, 337
Hpy188III	TCNNGA	1 cut(s)	378
Hpy8I	GTNNAC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	250, 319
HpyCH4IV	ACGT	2 cut(s)	368, 372
HpyCH4V	TGCA	1 cut(s)	307
HpyF3I	CTNAG	2 cut(s)	276, 336
HpySE526I	ACGT	2 cut(s)	368, 372
Hsp92II	CATG	2 cut(s)	200, 307
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	4, 217, 231
LpnPI	CCDG	3 cut(s)	95, 156, 204
Lsp1109I	GCAGC	2 cut(s)	259, 328
LweI	GCATC	3 cut(s)	68, 115, 249
MaeII	ACGT	2 cut(s)	368, 372
MalI	GATC	3 cut(s)	6, 219, 233
MboI	GATC	3 cut(s)	4, 217, 231
MboII	GAAGA	4 cut(s)	58, 103, 112, 304
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	81, 102, 112, 115, 218, 331
MseI	TTAA	3 cut(s)	171, 321, 359
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	3 cut(s)	4, 217, 231
NlaIII	CATG	2 cut(s)	200, 307
NspI	RCATGY	2 cut(s)	200, 307
Pfl23II	CGTACG	1 cut(s)	369
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	274, 343
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	350
PspLI	CGTACG	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	171, 321, 359
SatI	GCNGC	2 cut(s)	273, 342
Sau3AI	GATC	3 cut(s)	4, 217, 231
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	4 cut(s)	57, 113, 371, 375
SfaNI	GCATC	3 cut(s)	68, 115, 249
SinI	GGWCC	1 cut(s)	246
Sse9I	AATT	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	2 cut(s)	250, 319
TaiI	ACGT	2 cut(s)	371, 375
TaqI	TCGA	2 cut(s)	57, 210
TasI	AATT	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	171, 321, 359
Tru9I	TTAA	3 cut(s)	171, 321, 359
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	2 cut(s)	272, 341
TspDTI	ATGAA	2 cut(s)	42, 113
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	246
XceI	RCATGY	2 cut(s)	200, 307
XmiI	GTMKAC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.