Rh6CG194500

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016471
Physical Location & Seq
Forward (+)
32109992 .. 32117312
7321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG194500.1

Sequence Viewer

Length: 369 bp
ATGGTAGCAAATTTGCGACATTGCTCGCGTGACTTCCCCTTTATCGATACCGGTGATGAGCTGGCTGATTTTGCTATTTTTCAGGGGAAACTGATGAGGTTCTTGGGTGGGTTGAGTTCTTTGAATTTGTGTGTGTATCAGTTTGGGAGGTGGATTGAGGAGGATGCTTCCGTTCTTGTTCCTGCTGATATAAATCATATAATCAACATTAAGTTTGGGGATATTATTCTAGCACATGCTTGTCTCCTCGATGGTGATCCACTGAAATTGATCAGATTTCCAAGGACCGTCTCCTCGATGCTCTGTTTGGCTGCTCAGAATAGAAATAAGAAGGTAATTGATCTTTGTAATTTTTACATGTGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

6.25

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 28
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 2 cut(s) 10, 124
AflIII ACRYGT 1 cut(s) 357
AgeI ACCGGT 1 cut(s) 50
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw26I GTCTC 2 cut(s) 248, 295
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 2 cut(s) 10, 124
AsiGI ACCGGT 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 65, 266
AvaII GGWCC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 245
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 248, 295
BfaI CTAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmsI GCATC 2 cut(s) 154, 288
Bsa29I ATCGAT 1 cut(s) 45
BsaBI GATNNNNATC 2 cut(s) 192, 255
BsaJI CCNNGG 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 2 cut(s) 192, 255
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 169
BseJI GATNNNNATC 2 cut(s) 192, 255
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 329
BseRI GAGGAG 3 cut(s) 173, 236, 283
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 28
BshTI ACCGGT 1 cut(s) 50
BshVI ATCGAT 1 cut(s) 45
BsiSI CCGG 1 cut(s) 51
BsmAI GTCTC 2 cut(s) 248, 295
BsmBI CGTCTC 1 cut(s) 295
Bsp143I GATC 3 cut(s) 256, 270, 340
BspCNI CTCAG 1 cut(s) 328
BspDI ATCGAT 1 cut(s) 45
BspFNI CGCG 1 cut(s) 28
BspPI GGATC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 3 cut(s) 256, 270, 340
BssT1I CCWWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 26, 63
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 28
BstKTI GATC 3 cut(s) 259, 273, 343
BstMAI GTCTC 2 cut(s) 248, 295
BstMBI GATC 3 cut(s) 256, 270, 340
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 2 cut(s) 239, 361
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 298
Bsu15I ATCGAT 1 cut(s) 45
BsuTUI ATCGAT 1 cut(s) 45
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 260
Cac8I GCNNGC 2 cut(s) 26, 63
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 285
ClaI ATCGAT 1 cut(s) 45
CspAI ACCGGT 1 cut(s) 50
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 2 cut(s) 236, 358
CviJI RGCY 3 cut(s) 61, 65, 311
CviKI_1 RGCY 3 cut(s) 61, 65, 311
DdeI CTNAG 1 cut(s) 315
DpnI GATC 3 cut(s) 258, 272, 342
DpnII GATC 3 cut(s) 256, 270, 340
Eco130I CCWWGG 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 2 cut(s) 239, 361
FaiI YATR 5 cut(s) 191, 198, 200, 237, 359
FatI CATG 2 cut(s) 235, 357
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 312
HapII CCGG 1 cut(s) 51
Hin1II CATG 2 cut(s) 239, 361
HpaII CCGG 1 cut(s) 51
HphI GGTGA 2 cut(s) 65, 266
Hpy188I TCNGA 2 cut(s) 275, 318
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 2 cut(s) 239, 361
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 3 cut(s) 256, 270, 340
LpnPI CCDG 4 cut(s) 47, 64, 68, 195
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 2 cut(s) 154, 288
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 258, 272, 342
MboI GATC 3 cut(s) 256, 270, 340
MluCI AATT 5 cut(s) 10, 124, 266, 336, 349
MnlI CCTC 6 cut(s) 90, 141, 151, 154, 257, 304
MseI TTAA 1 cut(s) 210
MspI CCGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 3 cut(s) 256, 270, 340
NlaIII CATG 2 cut(s) 239, 361
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 2 cut(s) 239, 361
PciI ACATGT 1 cut(s) 357
PinAI ACCGGT 1 cut(s) 50
PkrI GCNGC 1 cut(s) 313
PscI ACATGT 1 cut(s) 357
PspPI GGNCC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 3 cut(s) 256, 270, 340
Sau96I GGNCC 1 cut(s) 285
SetI ASST 4 cut(s) 63, 101, 152, 336
SfaNI GCATC 2 cut(s) 154, 288
SinI GGWCC 1 cut(s) 285
Sse9I AATT 5 cut(s) 10, 124, 266, 336, 349
SspMI CTAG 1 cut(s) 230
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 3 cut(s) 45, 249, 296
TasI AATT 5 cut(s) 10, 124, 266, 336, 349
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 2 cut(s) 10, 124
XceI RCATGY 2 cut(s) 239, 361
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.