Rh2AG572700

FLX-like 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011129
Physical Location & Seq
Reverse (-)
80308437 .. 80311657
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG572700.1

Sequence Viewer

Length: 912 bp
ATGGGAAGTAAAGGTCGAATCCCACCGGCCCATCTCCGGCGTCCTCATCCCGGACCCGACCCGTATGGGCCTGGTGGGCCGGGCAACCGCCCACCTCCGGGTGCCTATTCACCCTTTGACATGTTGCCTCCTCCACAAGTTTTGGAGCAGAAGCTGGCTTCACAGCATGTGGAGATGCAGAGGCTGGCAACAGAGAACCAGAGACTGGCTTCGACGCACGGCAGCCTCAGGCAGGAGCTGGCAGGAGCTCAGCATGAGCTGCAGATACTGCATGCTCAGGCCGGAGCTATGAAGTCGGAGAGGGATCAGCAGATGAGGAGCCTGGTGGATAAGATTGCGAAAATGGAGGCTGAGCTGAAAGCGGCGGAGTCTGTTAAGGTGGAGCTGCAGCAGGTGCGTGCTGAAGCGAATAACTTGGTTGGGGCGAGGCAGGAGAGTATTGTTAAAGTGCAGCAGTTGAGTCAGGATCTTCAGAGGGCGCAGGGGGATGTGCAGCAGATTCCGGTTTTGGTTCAGCAACTCGATGGCCTCAGGCAGGAGTATCAGCATTGCAGGGCTACTTTTGACTATGAAAAGAAATTGTACAATGACCACCTTGAATCACTTCAGGTCATGGAGAAGAACTATGTTACCATGGCTAGGGAGGTAGAAAAGCTACGAGCAGAGTTATTGAATAATTCTGGTGCTGATAGAAGAACTGGTGGGTCTTATTATGGGAATCCTGGAACTAATGAAAGTGAGGCTTCTGGGCTTGCTGCAGGACAAAATGCTTATGAAGATAGCTATGGTGTTCCCCAGGTATTTCATCTTCCATATCTTAATGTTTTTAACTTTTTCTTCATATTTCTTTCCTTTTTACTATTTGAAGTTGTTTTTATAGTACCATGCCAGCTTGGTTTAGTCCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.84

Weight (kDa)

6.21

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67170 AT1G67170
fragaria_vesca FvH4_6g45670 FvH4_6g45670 FvH4_6g45670
malus_domestica MD09G1080900.v1.1 MD17G1072000.v1.1
prunus_persica Prupe.3G242800_v2.0.a1
pyrus_communis pycom09g00730 pycom17g07130
rosa_chinensis RchiOBHm_Chr2g0163821
rosa_laevigata RLG00000021418
rosa_multiflora Rmu_sc0001181.1_g000004
rosa_roxburghii Rroxscaffold_2G00086990
rosa_rugosa Rorug02G0504800
rosa_samantha Rh2AG572700 Rh2BG583400 Rh2CG554300 Rh2DG593000
rosa_wichuraiana Rw2G047350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 382
Acc36I ACCTGC 1 cut(s) 382
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 205
AciI CCGC 3 cut(s) 88, 362, 365
AclWI GGATC 2 cut(s) 312, 474
AcuI CTGAAG 3 cut(s) 423, 455, 590
AcyI GRCGYC 1 cut(s) 40
AfaI GTAC 2 cut(s) 584, 882
AfiI CCNNNNNNNGG 8 cut(s) 36, 50, 97, 98, 205, 232, 535, 639
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 3 cut(s) 599, 673, 866
AjnI CCWGG 4 cut(s) 70, 321, 721, 795
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 2 cut(s) 312, 474
AlwNI CAGNNNCTG 5 cut(s) 154, 184, 205, 238, 268
AoxI GGCC 5 cut(s) 27, 68, 77, 279, 526
ApeKI GCWGC 7 cut(s) 222, 259, 385, 388, 451, 493, 755
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 4 cut(s) 28, 53, 68, 77
AsuC2I CCSGG 3 cut(s) 51, 81, 99
AsuHPI GGTGA 1 cut(s) 102
AvaII GGWCC 1 cut(s) 53
AxyI CCTNAGG 2 cut(s) 227, 530
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 792, 824
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 7 cut(s) 234, 246, 372, 400, 463, 505, 742
BccI CCATC 2 cut(s) 39, 518
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 4 cut(s) 72, 323, 723, 797
BcnI CCSGG 3 cut(s) 51, 81, 99
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 3 cut(s) 260, 386, 756
BfuAI ACCTGC 1 cut(s) 382
BglI GCCNNNNNGGC 1 cut(s) 76
BisI GCNGC 8 cut(s) 223, 260, 363, 386, 389, 452, 494, 756
BlpI GCTNAGC 2 cut(s) 249, 351
BlsI GCNGC 8 cut(s) 224, 261, 364, 387, 390, 453, 495, 757
Bme1390I CCNGG 7 cut(s) 51, 72, 81, 99, 323, 723, 797
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 4 cut(s) 28, 53, 68, 77
BmiI GGNNCC 3 cut(s) 55, 103, 320
BmrFI CCNGG 7 cut(s) 51, 72, 81, 99, 323, 723, 797
BmsI GCATC 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 276
Bpu1102I GCTNAGC 2 cut(s) 249, 351
BpuMI CCSGG 3 cut(s) 51, 81, 99
BsaHI GRCGYC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 633, 795
BsaWI WCCGGW 1 cut(s) 502
Bsc4I CCNNNNNNNGG 8 cut(s) 36, 50, 97, 98, 205, 232, 535, 639
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 210, 703
Bse21I CCTNAGG 2 cut(s) 227, 530
Bse3DI GCAATG 1 cut(s) 547
BseBI CCWGG 4 cut(s) 72, 323, 723, 797
BseDI CCNNGG 2 cut(s) 633, 795
BseGI GGATG 2 cut(s) 46, 493
BseLI CCNNNNNNNGG 8 cut(s) 36, 50, 97, 98, 205, 232, 535, 639
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 5 cut(s) 241, 263, 290, 342, 544
BseNI ACTGG 2 cut(s) 210, 703
BseRI GAGGAG 2 cut(s) 120, 331
BseXI GCAGC 7 cut(s) 234, 246, 372, 400, 463, 505, 742
BsgI GTGCAG 2 cut(s) 470, 512
BshFI GGCC 5 cut(s) 29, 70, 79, 281, 528
BshNI GGYRCC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 7 cut(s) 26, 37, 51, 80, 98, 282, 503
BslI CCNNNNNNNGG 8 cut(s) 36, 50, 97, 98, 205, 232, 535, 639
BsmAI GTCTC 1 cut(s) 196
BsnI GGCC 5 cut(s) 29, 70, 79, 281, 528
Bsp1286I GDGCHC 1 cut(s) 250
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 2 cut(s) 304, 466
Bsp1720I GCTNAGC 2 cut(s) 249, 351
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 3 cut(s) 88, 362, 365
BspANI GGCC 5 cut(s) 29, 70, 79, 281, 528
BspCNI CTCAG 5 cut(s) 240, 262, 289, 343, 543
BspLI GGNNCC 3 cut(s) 55, 103, 320
BspMAI CTGCAG 3 cut(s) 264, 390, 760
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 2 cut(s) 312, 474
BspT107I GGYRCC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 547
BsrFI RCCGGY 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 2 cut(s) 210, 703
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 633, 795
BssMI GATC 2 cut(s) 304, 466
BssNI GRCGYC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 4 cut(s) 72, 323, 723, 797
BstACI GRCGYC 1 cut(s) 40
BstAPI GCANNNNNTGC 3 cut(s) 259, 268, 394
BstAUI TGTACA 1 cut(s) 582
BstC8I GCNNGC 7 cut(s) 156, 186, 240, 273, 399, 753, 890
BstDEI CTNAG 5 cut(s) 227, 249, 276, 351, 530
BstDSI CCRYGG 1 cut(s) 633
BstENI CCTNNNNNAGG 2 cut(s) 230, 533
BstF5I GGATG 2 cut(s) 46, 493
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 2 cut(s) 307, 469
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 2 cut(s) 304, 466
BstMWI GCNNNNNNNGC 4 cut(s) 76, 259, 268, 394
BstNI CCWGG 4 cut(s) 72, 323, 723, 797
BstNSI RCATGY 3 cut(s) 124, 170, 275
BstSCI CCNGG 7 cut(s) 49, 70, 79, 97, 321, 721, 795
BstSFI CTRYAG 3 cut(s) 260, 386, 756
BstV1I GCAGC 7 cut(s) 234, 246, 372, 400, 463, 505, 742
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
Bsu36I CCTNAGG 2 cut(s) 227, 530
BsuRI GGCC 5 cut(s) 29, 70, 79, 281, 528
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 2 cut(s) 46, 493
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 7 cut(s) 156, 186, 240, 273, 399, 753, 890
CaiI CAGNNNCTG 5 cut(s) 154, 184, 205, 238, 268
CfoI GCGC 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 4 cut(s) 28, 53, 68, 77
CseI GACGC 2 cut(s) 29, 223
Csp6I GTAC 2 cut(s) 583, 881
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 8 cut(s) 121, 167, 254, 272, 613, 634, 885, 905
CviQI GTAC 2 cut(s) 583, 881
DdeI CTNAG 5 cut(s) 227, 249, 276, 351, 530
DpnI GATC 2 cut(s) 306, 468
DpnII GATC 2 cut(s) 304, 466
EciI GGCGGA 1 cut(s) 380
Ecl136II GAGCTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 248
Eco57I CTGAAG 3 cut(s) 423, 455, 590
Eco81I CCTNAGG 2 cut(s) 227, 530
EcoICRI GAGCTC 1 cut(s) 248
EcoNI CCTNNNNNAGG 2 cut(s) 230, 533
EcoRII CCWGG 4 cut(s) 70, 321, 721, 795
EcoT14I CCWWGG 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 8 cut(s) 124, 170, 257, 275, 616, 637, 888, 908
FalI AAGNNNNNCTT 2 cut(s) 727, 759
FatI CATG 8 cut(s) 120, 166, 253, 271, 612, 633, 884, 904
Fnu4HI GCNGC 8 cut(s) 223, 260, 363, 386, 389, 452, 494, 756
FokI GGATG 2 cut(s) 33, 500
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 8 cut(s) 223, 260, 363, 386, 389, 452, 494, 756
FspBI CTAG 1 cut(s) 639
GlaI GCGC 1 cut(s) 480
GluI GCNGC 8 cut(s) 223, 260, 363, 386, 389, 452, 494, 756
HaeIII GGCC 5 cut(s) 29, 70, 79, 281, 528
HapII CCGG 7 cut(s) 26, 37, 51, 80, 98, 282, 503
HgaI GACGC 2 cut(s) 29, 223
HhaI GCGC 1 cut(s) 481
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 8 cut(s) 124, 170, 257, 275, 616, 637, 888, 908
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HinfI GANTC 6 cut(s) 18, 368, 460, 499, 599, 718
HpaII CCGG 7 cut(s) 26, 37, 51, 80, 98, 282, 503
HphI GGTGA 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 298, 474
Hpy188III TCNNGA 1 cut(s) 464
Hpy99I CGWCG 1 cut(s) 217
HpyCH4V TGCA 8 cut(s) 178, 262, 271, 388, 451, 493, 552, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 259, 268, 394
HpyF3I CTNAG 5 cut(s) 227, 249, 276, 351, 530
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 8 cut(s) 124, 170, 257, 275, 616, 637, 888, 908
HspAI GCGC 1 cut(s) 479
Kzo9I GATC 2 cut(s) 304, 466
LmnI GCTCC 6 cut(s) 145, 235, 245, 284, 318, 382
Lsp1109I GCAGC 7 cut(s) 234, 246, 372, 400, 463, 505, 742
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 639
MaeIII GTNAC 1 cut(s) 628
MalI GATC 2 cut(s) 306, 468
MboI GATC 2 cut(s) 304, 466
MboII GAAGA 6 cut(s) 461, 631, 705, 788, 800, 829
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 2 cut(s) 578, 676
MlyI GAGTC 2 cut(s) 377, 469
MmeI TCCRAC 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 4 cut(s) 375, 444, 819, 828
MspI CCGG 7 cut(s) 26, 37, 51, 80, 98, 282, 503
MspR9I CCNGG 7 cut(s) 51, 72, 81, 99, 323, 723, 797
MvaI CCWGG 4 cut(s) 72, 323, 723, 797
MwoI GCNNNNNNNGC 4 cut(s) 76, 259, 268, 394
NciI CCSGG 3 cut(s) 51, 81, 99
NcoI CCATGG 1 cut(s) 633
NdeII GATC 2 cut(s) 304, 466
NlaIII CATG 8 cut(s) 124, 170, 257, 275, 616, 637, 888, 908
NlaIV GGNNCC 3 cut(s) 55, 103, 320
NspI RCATGY 3 cut(s) 124, 170, 275
PaeI GCATGC 1 cut(s) 275
PaqCI CACCTGC 1 cut(s) 382
PciI ACATGT 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 4 cut(s) 18, 499, 599, 718
PflMI CCANNNNNTGG 1 cut(s) 205
PfoI TCCNGGA 2 cut(s) 49, 721
PkrI GCNGC 8 cut(s) 224, 261, 364, 387, 390, 453, 495, 757
PleI GAGTC 2 cut(s) 376, 468
PpsI GAGTC 2 cut(s) 376, 468
PscI ACATGT 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 250
Psp6I CCWGG 4 cut(s) 70, 321, 721, 795
PspGI CCWGG 4 cut(s) 70, 321, 721, 795
PspN4I GGNNCC 3 cut(s) 55, 103, 320
PspPI GGNCC 4 cut(s) 28, 53, 68, 77
PstI CTGCAG 3 cut(s) 264, 390, 760
PstNI CAGNNNCTG 5 cut(s) 154, 184, 205, 238, 268
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 2 cut(s) 584, 882
RsaNI GTAC 2 cut(s) 583, 881
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 4 cut(s) 375, 444, 819, 828
SatI GCNGC 8 cut(s) 223, 260, 363, 386, 389, 452, 494, 756
Sau3AI GATC 2 cut(s) 304, 466
Sau96I GGNCC 4 cut(s) 28, 53, 68, 77
SchI GAGTC 2 cut(s) 377, 469
ScrFI CCNGG 7 cut(s) 51, 72, 81, 99, 323, 723, 797
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 1 cut(s) 165
SfcI CTRYAG 3 cut(s) 260, 386, 756
SfiI GGCCNNNNNGGCC 1 cut(s) 76
SinI GGWCC 1 cut(s) 53
SphI GCATGC 1 cut(s) 275
Sse9I AATT 2 cut(s) 578, 676
SsiI CCGC 3 cut(s) 88, 362, 365
SspMI CTAG 1 cut(s) 639
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 7 cut(s) 49, 70, 79, 97, 321, 721, 795
StyI CCWWGG 1 cut(s) 633
TaqI TCGA 3 cut(s) 16, 212, 522
TasI AATT 2 cut(s) 578, 676
TatI WGTACW 1 cut(s) 582
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 4 cut(s) 18, 499, 599, 718
Tru1I TTAA 4 cut(s) 375, 444, 819, 828
Tru9I TTAA 4 cut(s) 375, 444, 819, 828
TseI GCWGC 7 cut(s) 222, 259, 385, 388, 451, 493, 755
TspDTI ATGAA 6 cut(s) 305, 585, 747, 789, 794, 829
Van91I CCANNNNNTGG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 53
XagI CCTNNNNNAGG 2 cut(s) 230, 533
XceI RCATGY 3 cut(s) 124, 170, 275
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.