Rh4BG443000

Serine threonine-protein kinase sepA-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006663
Physical Location & Seq
Forward (+)
58251322 .. 58265508
14187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG443000.1

Sequence Viewer

Length: 4053 bp
ATGTCTCGGCAGGCGGCGTCGGCGTCGGCCCACTTCCACAAATCCAAGACTCTCGATAACAAATACATGCTTGGAGATGAGATTGGAAAGGGAGCATATGGTCGAGTTTACAAGGGTTTGGATTTGGAGAATGGAGACTTTGTTGCAATTAAACAGGTTTCGTTGGAGAATATTGCGCAGGAGGATCTCAACGTTATAATGCAAGAGATTGATTTACTCAAGAATTTAAATCACAAAAACATTGTGAAATATCTTGGATCCTTAAAGACAAGGACACATCTTCACATAGTCCTAGAATATGTGGAGAATGGCTCACTTGCAAACATTATTAAGCCAAATAAGTTTGGACCTTTTCCAGAATCACTGGTAGCTGTGTACATTGCTCAGGTTTTGGAAGGCTTGGTGTATTTACATGAACAGGGTGTAATCCATCGGGATATCAAGGGTGCAAATATATTGACAACTAAAGAGGGCCTTGTGAAACTTGCTGATTTTGGTGTTGCTACAAAATTGACCGAGGCTGATGTGAATACACATTCAGTTGTTGGAACGCCATATTGGATGGCCCCAGAGGTGATTGAAATGTCGGGGGTTTGTGCTGCTTCAGATATTTGGAGTGTTGGCTGCACTGTTATTGAACTTCTTACATGTGTACCTCCTTATTATGATTTACAGCCAATGCCAGCACTATTTCGTATTGTTCAGGATGAACATCCTCCGATTCCTGACAGTCTATCTCCTGACATTACTGATTTTCTGTGTCAATGCTTTAAAAAGGATGCTAGGCACCGGCCTGATGCAAAAACACTGCTATCTCATCCTTGGATACAAAACTGCAGGCGAGCGTTGCAATCATCTATTCGTCACAGTGGAACATTAAGAGATATACAGGAAGATGTTTCTAAGGGTGCAGAACTCTCCAATGGAGATATTCGGAGCTCTGGCGAAAGTCCTGCAGAGAAAACAGAAGAAGCAGCTTCTGCTATTAAAGCAGACTCTAGGAAAGAGTTATTATCAACCGGGGTTTTTGATATAAGAAAATCTGGCGAGGATCCTGCTTCAGATGTGAAATTTGTTGAGGAAAAAGCAGATGCTTTAGAAAATGATCTGACGGATCAGGCTCCCACCTTAGCTATACATGAAAAATCATCTTTGCCAAATGGTTCTGGCAGAATATCTTCTAATAAAGAATTGTCTGCCTCCAAGCCAGCTGAGCTTGATGGTCGAGCACATACGGCCAACGATGATGAACCACCGATGAATGGGGAGGTTAAATCTCCTGAATTAACGACAAATAGTGTAACTGGGAAACATGGAAAAGGGAATTCTATTGGGTTTAGATCATTTGGTTTTGGAGCAAGAAATCAGGATGGTACTTTTCAAAAGGCTGCAAAGATGCCAGTCAGTTTGGAAGGGAATGAACTCAGTAAATTTAGTGACACTCCAGGAGATGCTTCCTTGGATGATCTATTTCATCCATTGGATAAGCATCCCGATGATAGGGCAACTGAAGCTTCAACATCTTCTTCAATTTCACATTTGAACCAAGGAAATACATCTGTAAATGATGCTGGGAAAAGTGACCTGGCTATGAAATTAAGGGCTACAATTGCTCAGAAGCAAATGGAGAGTGAAATGGGTCAGGCTAATGGTAGTGGTGGTAACCTGTTACAGCTGATGATGGGTGTTCTCCAAGATGATGTGATTGATATTGGTGGTTTGGTATTTGATGAAAAGTTGCCCGGAGAAAACCTTTTTCCCCTACAGGCTGTTGAGTTTAGCCGGTTGGTTGGATCATTGAAACTAGATGAATCAGAAGATGTTGTTGTCTCTGCCTGCCAGAAACTTATTGCTATATTCCATCAGCGTCCAGAGCAGAAAATTGTTTTTGTCACACAGCATGGTTTGCTCCCTTTAATGGAATTGCTTGAAGTTCCTAAAACTCGAGTTATATGTTCTGTGCTTCAAATCATAAACCAGATAATCAAAGACAACACTGATTTCCAGGAAAATGCTTGTCATGTTGGTCTGATCCCAGTGGTAATGAGCTTTGCGGTACCTAATCATTCTCGAGAAATTCGTATGGAAGCAGCTTATTTCTTGCAGCAGCTTTGTCAGTCAAGCCCATTGACTTTGCAAATGTTCATAGCTTGCCGTGGAATACCTGTTCTGGTGGGCTTTTTAGAGGCTGATTATGCAAAATTCAGGGAAATGGTTCATCTAGCTATTGACGGCATGTGGCAAGTCTTTAAGCTTCAGCGATCAACCCCTAGGAATGATTTCTGTCGCATAGCTGCGAAGAATGGAATACTCCTGAGGCTTATTAACACCCTTTATAGCTTGAATGAGGCAACACGTTTAGCTTCCATTTCTGGTGGGGGTGGATTTCCTCTAGACGGTTCTGCTCAGCGCCCACGGTCTGGTTCATTGGATTCTGGTCATCCCATTTTTGCTCAGAGTGATGGACCACTTCCTGATCATAATGATCACTCTAAGGTTAGGCATGGTGTAAATGATTTGCATTTGTCTACCGGAACAGAACCTGCACGTGCTTCAACTTCTAATTCTCAAAGGTCAGATGCCAATCAATCAGATCTGCGGTATCATCATCTAGATACTGATAGACCTCAATCTAGCAATGCAGTAGTAGATGCTTCAGTTTCTTCTAAATTGCAAGACCCAACATCCGCAGATAAAGTAGTCAATATTTCAGCGAAGGAACCTTCAACTACTTCTCGAGGAGATCTTGACCTTAGGCAGCAGCGAGCCCCTATATCTCTTCATAGATCATCCACTGATAGATCTCCTAAAATGATGGAAGCTACATCAAATGGCTTATCAACAACAGCACCTACTCAACAGGAGCAAGTTCGACCTCTTCTTAGCTTGTTGGAGAAAGAGCCCCCTTCAAGACACTTTTCTGGTCAGCTCGATTATGTACGCCACCTCCCTGGGTTGGAGAGACATGAAAGTATACTGCCCCTTTTACATGCATCTAATGAAAAGAAAACAAATGGTGAATTAGATTTCCTTATGGCAGAATTTGCAGATGTCTCTCAACGTGGTAGAGAGAAAGGGAATCTTGATTCTACTACTAGAATTCCCCCCAAAACAGTAAATAAGGAGGTGGGAACACTAGCATCTAACAAAGGAGCTGCTTCCACCTCTGGGATAGCATCTCAGACAGCATCAGGGGTGTTGTCTGGTTCGGGTGTTCTAAATGCTAGGCCAGGCAGTGCAACATCATCAGGTTTACTCTCGCACATGGTTTCGACATTGAATGCAGACGTTGCAAGGGAATACCTAGAAAAGGTGGCAGATCTTCTGCTTGAGTTTGCACGAGCAGATACTACTGTAAAATCATACATGTGTAGCCAAAGTTTGCTCAGCCGTCTTTTTCAGATGTTTAATAGGGTGGAGCCCCCAATTCTTTTAAAGATACTAAAGTGTGTCAACCATTTATCAACCGATCCAAACTGCTTAGAGAATCTTCAGCGGGCAGATGCAATCAAATATCTGATTCCAAATCTTGAACTCAAAGAAGGATCTCTTGTATCTCAAATACATCATGAGGTCCTAAATGCCTTGTTCAATCTGTGTAAGATTAACAAGAGGAGACAGGAACAAGCAGCTGAGAATGGAATAATTCCACACTTAATGCACTTTATTGAGTCTAACTCTCCTCTGAAACAATATGCGTTGCCTTTGCTCTGTGATATGGCTCATGCTTCACGTAATTCAAGAGAGCAATTAAGGGCTCATGGTGGGTTGGATGTGTACTTGAGCCTTCTAGAGGATGAGCTTTGGTCTGTGACTGCATTGGATTCAATTGCTGTTTGCTTAGCTCATGACAATGACAACCGGAAGGTAGAACAAGCACTGTTGAAAAAGGATGCAGTTCAGAAATTGGTGAAATTCTTCCAGTGCTGTCCAGAACAGTATTTCGTGCACATATTGGAGCCATTTTTGAAAATTATCACGTATGTGATTATATATATGACCTATTTACTTGTTTTAAATAGTGTCCTTTCTTTGTTCTTCCTGGTCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001558 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007049 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009893 GO:0009987 GO:0010324 GO:0010562 GO:0010604 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0022604 GO:0023014 GO:0023052 GO:0030587 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0032506 GO:0032535 GO:0033554 GO:0033674 GO:0035556 GO:0036089 GO:0036211 GO:0040008 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0045995 GO:0046777 GO:0048518 GO:0048522 GO:0048638 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051246 GO:0051247 GO:0051301 GO:0051302 GO:0051338 GO:0051347 GO:0051510 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0061024 GO:0061387 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090066 GO:0090702 GO:0099024 GO:0099120 GO:0140096 GO:1901564 GO:1903047 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

1350

Amino Acids

148.29

Weight (kDa)

5.94

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 23 - 276 4.9e-73 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 24 - 272 6.4e-51 Protein tyrosine and serine/threonine kinase
ARM_ARMC5 PF24768 1084 - 1268 1.2e-08 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 197
Acc16I TGCGCA 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 2551
Acc65I GGTACC 1 cut(s) 2056
AccB1I GGYRCC 2 cut(s) 786, 2056
AccB7I CCANNNNNTGG 1 cut(s) 2420
AccI GTMKAC 2 cut(s) 2528, 2974
AciI CCGC 5 cut(s) 14, 2054, 2599, 2688, 3496
AclI AACGTT 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 1236
AcsI RAATTY 9 cut(s) 223, 1070, 1324, 1430, 2076, 2201, 3041, 3099, 3914
AcuI CTGAAG 6 cut(s) 588, 1044, 1530, 2240, 2640, 3476
AcvI CACGTG 1 cut(s) 2549
AcyI GRCGYC 2 cut(s) 17, 23
AfaI GTAC 6 cut(s) 377, 654, 1375, 2058, 2940, 3779
AfiI CCNNNNNNNGG 9 cut(s) 1262, 1500, 1918, 2396, 2420, 2956, 3168, 3310, 3793
AflIII ACRYGT 3 cut(s) 647, 2354, 3366
AjnI CCWGG 6 cut(s) 1444, 1584, 2004, 2950, 3229, 4041
AjuI GAANNNNNNNTTGG 2 cut(s) 541, 573
AleI CACNNNNGTG 1 cut(s) 3983
AloI GAACNNNNNNTCC 2 cut(s) 2151, 2183
Alw21I GWGCWC 3 cut(s) 941, 1231, 3951
Alw26I GTCTC 6 cut(s) 9, 129, 1834, 2956, 3058, 3610
Alw44I GTGCAC 1 cut(s) 3947
AlwNI CAGNNNCTG 2 cut(s) 980, 2543
Ama87I CYCGRG 3 cut(s) 1944, 2070, 2736
AoxI GGCC 6 cut(s) 27, 472, 564, 791, 1236, 3227
ApaLI GTGCAC 1 cut(s) 3947
ApoI RAATTY 9 cut(s) 223, 1070, 1324, 1430, 2076, 2201, 3041, 3099, 3914
Asp700I GAANNNNTTC 4 cut(s) 1177, 2214, 2279, 3917
Asp718I GGTACC 1 cut(s) 2056
AspA2I CCTAGG 1 cut(s) 2270
AspLEI GCGC 2 cut(s) 178, 2412
AspS9I GGNCC 6 cut(s) 28, 347, 472, 565, 2465, 3574
AsuC2I CCSGG 2 cut(s) 1021, 1743
AsuHPI GGTGA 3 cut(s) 586, 3029, 3922
AvaI CYCGRG 3 cut(s) 1944, 2070, 2736
AvaII GGWCC 3 cut(s) 347, 2465, 3574
AvrII CCTAGG 1 cut(s) 2270
AxyI CCTNAGG 2 cut(s) 2315, 2753
BaeGI GKGCMC 1 cut(s) 3951
BaeI ACNNNNGTAYC 6 cut(s) 636, 669, 3339, 3372, 3431, 3464
BamHI GGATCC 2 cut(s) 257, 1051
BanI GGYRCC 2 cut(s) 786, 2056
BanII GRGCYC 5 cut(s) 941, 2770, 2904, 3423, 3760
BauI CACGAG 1 cut(s) 3339
BbrPI CACGTG 1 cut(s) 2549
Bbv12I GWGCWC 3 cut(s) 941, 1231, 3951
BccI CCATC 8 cut(s) 438, 556, 1214, 1364, 1675, 1869, 2456, 2809
BceAI ACGGC 4 cut(s) 1251, 2139, 2248, 3375
BcgI CGANNNNNNTGC 4 cut(s) 935, 969, 1037, 1071
BciT130I CCWGG 6 cut(s) 1446, 1586, 2006, 2952, 3231, 4043
BciVI GTATCC 1 cut(s) 819
BclI TGATCA 2 cut(s) 2476, 2485
BcnI CCSGG 2 cut(s) 1021, 1743
BcoDI GTCTC 6 cut(s) 9, 129, 1834, 2956, 3058, 3610
BfmI CTRYAG 3 cut(s) 835, 954, 1763
BfoI RGCGCY 1 cut(s) 2413
BfuAI ACCTGC 1 cut(s) 2551
BfuI GTATCC 1 cut(s) 819
BglII AGATCT 4 cut(s) 2593, 2743, 2801, 3319
BlnI CCTAGG 1 cut(s) 2270
BlpI GCTNAGC 4 cut(s) 1212, 2406, 3386, 3841
Bme1390I CCNGG 8 cut(s) 1021, 1446, 1586, 1743, 2006, 2952, 3231, 4043
Bme18I GGWCC 3 cut(s) 347, 2465, 3574
BmeT110I CYCGRG 3 cut(s) 1944, 2070, 2736
BmgT120I GGNCC 6 cut(s) 28, 347, 472, 565, 2465, 3574
BmiI GGNNCC 9 cut(s) 259, 567, 788, 1053, 1122, 2058, 2721, 3420, 3960
BmrFI CCNGG 8 cut(s) 1021, 1446, 1586, 1743, 2006, 2952, 3231, 4043
BmrI ACTGGG 2 cut(s) 1314, 2030
BmuI ACTGGG 2 cut(s) 1314, 2030
BplI GAGNNNNNCTC 4 cut(s) 296, 328, 3662, 3694
BpmI CTGGAG 1 cut(s) 1428
Bpu10I CCTNAGC 2 cut(s) 384, 1129
Bpu1102I GCTNAGC 4 cut(s) 1212, 2406, 3386, 3841
BpuEI CTTGAG 3 cut(s) 203, 3350, 3802
BpuMI CCSGG 2 cut(s) 1021, 1743
BsaAI YACGTR 3 cut(s) 2549, 3734, 3981
BsaBI GATNNNNATC 3 cut(s) 711, 1488, 2583
BsaHI GRCGYC 2 cut(s) 17, 23
BsaWI WCCGGW 2 cut(s) 2531, 3861
BsaXI ACNNNNNCTCC 4 cut(s) 126, 156, 2931, 2961
Bsc4I CCNNNNNNNGG 9 cut(s) 1262, 1500, 1918, 2396, 2420, 2956, 3168, 3310, 3793
Bse118I RCCGGY 2 cut(s) 789, 1782
Bse1I ACTGG 5 cut(s) 369, 1309, 1400, 2036, 3922
Bse21I CCTNAGG 2 cut(s) 2315, 2753
Bse3DI GCAATG 2 cut(s) 378, 2644
Bse8I GATNNNNATC 3 cut(s) 711, 1488, 2583
BseBI CCWGG 6 cut(s) 1446, 1586, 2006, 2952, 3231, 4043
BseJI GATNNNNATC 3 cut(s) 711, 1488, 2583
BseLI CCNNNNNNNGG 9 cut(s) 1262, 1500, 1918, 2396, 2420, 2956, 3168, 3310, 3793
BseMI GCAATG 2 cut(s) 378, 2644
BseNI ACTGG 5 cut(s) 369, 1309, 1400, 2036, 3922
BseRI GAGGAG 3 cut(s) 2754, 3628, 3672
BseSI GKGCMC 1 cut(s) 3951
BseYI CCCAGC 1 cut(s) 1571
BsgI GTGCAG 3 cut(s) 610, 930, 2529
BshFI GGCC 6 cut(s) 29, 474, 566, 793, 1238, 3229
BshNI GGYRCC 2 cut(s) 786, 2056
BsiHKAI GWGCWC 3 cut(s) 941, 1231, 3951
BsiHKCI CYCGRG 3 cut(s) 1944, 2070, 2736
BsiSI CCGG 6 cut(s) 790, 1020, 1743, 1783, 2532, 3862
BslI CCNNNNNNNGG 9 cut(s) 1262, 1500, 1918, 2396, 2420, 2956, 3168, 3310, 3793
BsmAI GTCTC 6 cut(s) 9, 129, 1834, 2956, 3058, 3610
BsmI GAATGC 1 cut(s) 3286
BsnI GGCC 6 cut(s) 29, 474, 566, 793, 1238, 3229
BsoBI CYCGRG 3 cut(s) 1944, 2070, 2736
Bsp1286I GDGCHC 7 cut(s) 941, 1231, 2770, 2904, 3423, 3760, 3951
Bsp1407I TGTACA 1 cut(s) 375
Bsp1720I GCTNAGC 4 cut(s) 1212, 2406, 3386, 3841
BspACI CCGC 5 cut(s) 14, 2054, 2599, 2688, 3496
BspANI GGCC 6 cut(s) 29, 474, 566, 793, 1238, 3229
BspHI TCATGA 2 cut(s) 3568, 3847
BspLI GGNNCC 9 cut(s) 259, 567, 788, 1053, 1122, 2058, 2721, 3420, 3960
BspMAI CTGCAG 2 cut(s) 839, 958
BspMI ACCTGC 1 cut(s) 2551
BspT107I GGYRCC 2 cut(s) 786, 2056
BsrDI GCAATG 2 cut(s) 378, 2644
BsrFI RCCGGY 2 cut(s) 789, 1782
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 5 cut(s) 369, 1309, 1400, 2036, 3922
BssAI RCCGGY 2 cut(s) 789, 1782
BssNAI GTATAC 1 cut(s) 2975
BssNI GRCGYC 2 cut(s) 17, 23
BssSI CACGAG 1 cut(s) 3339
BssT1I CCWWGG 4 cut(s) 821, 1458, 1546, 2270
Bst1107I GTATAC 1 cut(s) 2975
Bst2BI CACGAG 1 cut(s) 3339
Bst2UI CCWGG 6 cut(s) 1446, 1586, 2006, 2952, 3231, 4043
Bst4CI ACNGT 9 cut(s) 631, 731, 869, 2399, 2418, 3115, 3355, 3882, 3939
Bst6I CTCTTC 2 cut(s) 2784, 2883
BstACI GRCGYC 2 cut(s) 17, 23
BstAPI GCANNNNNTGC 4 cut(s) 980, 1906, 3044, 3290
BstAUI TGTACA 1 cut(s) 375
BstBAI YACGTR 3 cut(s) 2549, 3734, 3981
BstC8I GCNNGC 9 cut(s) 12, 684, 839, 843, 1209, 1837, 2152, 2766, 3498
BstDSI CCRYGG 2 cut(s) 2155, 2414
BstEII GGTNACC 1 cut(s) 1661
BstENI CCTNNNNNAGG 2 cut(s) 3308, 3791
BstH2I RGCGCY 1 cut(s) 2413
BstHHI GCGC 2 cut(s) 178, 2412
BstMAI GTCTC 6 cut(s) 9, 129, 1834, 2956, 3058, 3610
BstNI CCWGG 6 cut(s) 1446, 1586, 2006, 2952, 3231, 4043
BstNSI RCATGY 5 cut(s) 70, 651, 2239, 2993, 3370
BstPI GGTNACC 1 cut(s) 1661
BstSCI CCNGG 8 cut(s) 1019, 1444, 1584, 1741, 2004, 2950, 3229, 4041
BstSFI CTRYAG 3 cut(s) 835, 954, 1763
BstSLI GKGCMC 1 cut(s) 3951
BstX2I RGATCY 8 cut(s) 184, 257, 1051, 2593, 2743, 2801, 3319, 3545
BstXI CCANNNNNNTGG 1 cut(s) 2951
BstYI RGATCY 8 cut(s) 184, 257, 1051, 2593, 2743, 2801, 3319, 3545
BstZ17I GTATAC 1 cut(s) 2975
Bsu36I CCTNAGG 2 cut(s) 2315, 2753
BsuI GTATCC 1 cut(s) 819
BsuRI GGCC 6 cut(s) 29, 474, 566, 793, 1238, 3229
BtgI CCRYGG 2 cut(s) 2155, 2414
BtsI GCAGTG 2 cut(s) 806, 3241
BveI ACCTGC 1 cut(s) 2551
Cac8I GCNNGC 9 cut(s) 12, 684, 839, 843, 1209, 1837, 2152, 2766, 3498
CaiI CAGNNNCTG 2 cut(s) 980, 2543
CciI TCATGA 2 cut(s) 3568, 3847
CfoI GCGC 2 cut(s) 178, 2412
Cfr10I RCCGGY 2 cut(s) 789, 1782
Cfr13I GGNCC 6 cut(s) 28, 347, 472, 565, 2465, 3574
CseI GACGC 3 cut(s) 6, 12, 1856
Csp6I GTAC 6 cut(s) 376, 653, 1374, 2057, 2939, 3778
CviQI GTAC 6 cut(s) 376, 653, 1374, 2057, 2939, 3778
DraI TTTAAA 4 cut(s) 228, 772, 3435, 4017
EaeI YGGCCR 1 cut(s) 1236
Eam1104I CTCTTC 2 cut(s) 2784, 2883
EarI CTCTTC 2 cut(s) 2784, 2883
Ecl136II GAGCTC 1 cut(s) 939
Eco130I CCWWGG 4 cut(s) 821, 1458, 1546, 2270
Eco24I GRGCYC 5 cut(s) 941, 2770, 2904, 3423, 3760
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 3 cut(s) 347, 2465, 3574
Eco53kI GAGCTC 1 cut(s) 939
Eco57I CTGAAG 6 cut(s) 588, 1044, 1530, 2240, 2640, 3476
Eco72I CACGTG 1 cut(s) 2549
Eco81I CCTNAGG 2 cut(s) 2315, 2753
Eco88I CYCGRG 3 cut(s) 1944, 2070, 2736
Eco91I GGTNACC 1 cut(s) 1661
EcoICRI GAGCTC 1 cut(s) 939
EcoNI CCTNNNNNAGG 2 cut(s) 3308, 3791
EcoO109I RGGNCCY 2 cut(s) 472, 3574
EcoO65I GGTNACC 1 cut(s) 1661
EcoRI GAATTC 2 cut(s) 1324, 3099
EcoRII CCWGG 6 cut(s) 1444, 1584, 2004, 2950, 3229, 4041
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 4 cut(s) 821, 1458, 1546, 2270
EcoT22I ATGCAT 1 cut(s) 2995
EcoT38I GRGCYC 5 cut(s) 941, 2770, 2904, 3423, 3760
ErhI CCWWGG 4 cut(s) 821, 1458, 1546, 2270
FalI AAGNNNNNCTT 6 cut(s) 459, 491, 3066, 3098, 3534, 3566
FauI CCCGC 1 cut(s) 3489
FauNDI CATATG 1 cut(s) 97
FbaI TGATCA 2 cut(s) 2476, 2485
FblI GTMKAC 2 cut(s) 2528, 2974
FriOI GRGCYC 5 cut(s) 941, 2770, 2904, 3423, 3760
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 2 cut(s) 177, 2411
GsaI CCCAGC 1 cut(s) 1575
GsuI CTGGAG 1 cut(s) 1428
HaeII RGCGCY 1 cut(s) 2413
HaeIII GGCC 6 cut(s) 29, 474, 566, 793, 1238, 3229
HapII CCGG 6 cut(s) 790, 1020, 1743, 1783, 2532, 3862
HgaI GACGC 3 cut(s) 6, 12, 1856
HhaI GCGC 2 cut(s) 178, 2412
Hin1I GRCGYC 2 cut(s) 17, 23
Hin6I GCGC 2 cut(s) 176, 2410
HinP1I GCGC 2 cut(s) 176, 2410
HincII GTYRAC 1 cut(s) 3454
HindII GTYRAC 1 cut(s) 3454
HindIII AAGCTT 2 cut(s) 1512, 2252
HpaII CCGG 6 cut(s) 790, 1020, 1743, 1783, 2532, 3862
HphI GGTGA 3 cut(s) 586, 3029, 3922
Hpy166II GTNNAC 9 cut(s) 109, 376, 653, 2529, 2975, 3254, 3454, 3778, 3949
Hpy8I GTNNAC 9 cut(s) 109, 376, 653, 2529, 2975, 3254, 3454, 3778, 3949
Hpy99I CGWCG 2 cut(s) 22, 28
HpyAV CCTTC 8 cut(s) 389, 1406, 2710, 2733, 2916, 3536, 3797, 3859
HpyCH4III ACNGT 9 cut(s) 631, 731, 869, 2399, 2418, 3115, 3355, 3882, 3939
HpyCH4IV ACGT 7 cut(s) 192, 2356, 2548, 3061, 3288, 3733, 3980
HpySE526I ACGT 7 cut(s) 192, 2356, 2548, 3061, 3288, 3733, 3980
Hsp92I GRCGYC 2 cut(s) 17, 23
HspAI GCGC 2 cut(s) 176, 2410
KpnI GGTACC 1 cut(s) 2060
Ksp22I TGATCA 2 cut(s) 2476, 2485
LmnI GCTCC 9 cut(s) 92, 936, 1126, 1355, 1914, 2863, 3152, 3418, 3958
MaeII ACGT 7 cut(s) 192, 2356, 2548, 3061, 3288, 3733, 3980
MaeIII GTNAC 8 cut(s) 863, 1300, 1436, 1580, 1661, 1668, 1891, 3811
MfeI CAATTG 2 cut(s) 1608, 3828
MflI RGATCY 8 cut(s) 184, 257, 1051, 2593, 2743, 2801, 3319, 3545
MhlI GDGCHC 7 cut(s) 941, 1231, 2770, 2904, 3423, 3760, 3951
MlyI GAGTC 3 cut(s) 43, 989, 3680
MmeI TCCRAC 6 cut(s) 144, 526, 1771, 2871, 2937, 3750
Mph1103I ATGCAT 1 cut(s) 2995
MroXI GAANNNNTTC 4 cut(s) 1177, 2214, 2279, 3917
MslI CAYNNNNRTG 4 cut(s) 1494, 3367, 3852, 3983
MspA1I CMGCKG 4 cut(s) 1211, 1675, 3496, 3632
MspI CCGG 6 cut(s) 790, 1020, 1743, 1783, 2532, 3862
MspR9I CCNGG 8 cut(s) 1021, 1446, 1586, 1743, 2006, 2952, 3231, 4043
MunI CAATTG 2 cut(s) 1608, 3828
Mva1269I GAATGC 1 cut(s) 3286
MvaI CCWGG 6 cut(s) 1446, 1586, 2006, 2952, 3231, 4043
NciI CCSGG 2 cut(s) 1021, 1743
NdeI CATATG 1 cut(s) 97
NlaIV GGNNCC 9 cut(s) 259, 567, 788, 1053, 1122, 2058, 2721, 3420, 3960
NmuCI GTSAC 5 cut(s) 863, 1436, 1580, 1891, 3811
NsbI TGCGCA 1 cut(s) 177
NsiI ATGCAT 1 cut(s) 2995
NspI RCATGY 5 cut(s) 70, 651, 2239, 2993, 3370
OliI CACNNNNGTG 1 cut(s) 3983
PaeR7I CTCGAG 3 cut(s) 1944, 2070, 2736
PagI TCATGA 2 cut(s) 3568, 3847
PasI CCCWGGG 1 cut(s) 2951
PciI ACATGT 2 cut(s) 647, 3366
PcsI WCGNNNNNNNCGW 1 cut(s) 2077
PctI GAATGC 1 cut(s) 3286
PdmI GAANNNNTTC 4 cut(s) 1177, 2214, 2279, 3917
PfeI GAWTC 9 cut(s) 359, 721, 1811, 2432, 3079, 3086, 3487, 3520, 3824
PflMI CCANNNNNTGG 1 cut(s) 2420
PfoI TCCNGGA 2 cut(s) 1444, 2004
PleI GAGTC 3 cut(s) 43, 989, 3679
PmaCI CACGTG 1 cut(s) 2549
PmlI CACGTG 1 cut(s) 2549
PpsI GAGTC 3 cut(s) 43, 989, 3679
Ppu21I YACGTR 3 cut(s) 2549, 3734, 3981
PpuMI RGGWCCY 1 cut(s) 3574
PscI ACATGT 2 cut(s) 647, 3366
PsiI TTATAA 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 941
Psp1406I AACGTT 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 3574
Psp6I CCWGG 6 cut(s) 1444, 1584, 2004, 2950, 3229, 4041
PspCI CACGTG 1 cut(s) 2549
PspEI GGTNACC 1 cut(s) 1661
PspFI CCCAGC 1 cut(s) 1571
PspGI CCWGG 6 cut(s) 1444, 1584, 2004, 2950, 3229, 4041
PspN4I GGNNCC 9 cut(s) 259, 567, 788, 1053, 1122, 2058, 2721, 3420, 3960
PspPI GGNCC 6 cut(s) 28, 347, 472, 565, 2465, 3574
PspPPI RGGWCCY 1 cut(s) 3574
PspXI VCTCGAGB 1 cut(s) 1944
PstI CTGCAG 2 cut(s) 839, 958
PstNI CAGNNNCTG 2 cut(s) 980, 2543
PsuI RGATCY 8 cut(s) 184, 257, 1051, 2593, 2743, 2801, 3319, 3545
PvuII CAGCTG 3 cut(s) 1211, 1675, 3632
RsaI GTAC 6 cut(s) 377, 654, 1375, 2058, 2940, 3779
RsaNI GTAC 6 cut(s) 376, 653, 1374, 2057, 2939, 3778
RseI CAYNNNNRTG 4 cut(s) 1494, 3367, 3852, 3983
SacI GAGCTC 1 cut(s) 941
Sau96I GGNCC 6 cut(s) 28, 347, 472, 565, 2465, 3574
SchI GAGTC 3 cut(s) 43, 989, 3680
ScrFI CCNGG 8 cut(s) 1021, 1446, 1586, 1743, 2006, 2952, 3231, 4043
SduI GDGCHC 7 cut(s) 941, 1231, 2770, 2904, 3423, 3760, 3951
SfcI CTRYAG 3 cut(s) 835, 954, 1763
Sfr274I CTCGAG 3 cut(s) 1944, 2070, 2736
SinI GGWCC 3 cut(s) 347, 2465, 3574
SlaI CTCGAG 3 cut(s) 1944, 2070, 2736
SmiI ATTTAAAT 1 cut(s) 228
SmiMI CAYNNNNRTG 4 cut(s) 1494, 3367, 3852, 3983
SmlI CTYRAG 6 cut(s) 218, 1944, 2070, 2736, 3329, 3781
SmoI CTYRAG 6 cut(s) 218, 1944, 2070, 2736, 3329, 3781
SsiI CCGC 5 cut(s) 14, 2054, 2599, 2688, 3496
SspI AATATT 2 cut(s) 172, 2707
SstI GAGCTC 1 cut(s) 941
StyD4I CCNGG 8 cut(s) 1019, 1444, 1584, 1741, 2004, 2950, 3229, 4041
StyI CCWWGG 4 cut(s) 821, 1458, 1546, 2270
SwaI ATTTAAAT 1 cut(s) 228
TaaI ACNGT 9 cut(s) 631, 731, 869, 2399, 2418, 3115, 3355, 3882, 3939
TaiI ACGT 7 cut(s) 195, 2359, 2551, 3064, 3291, 3736, 3983
TaqI TCGA 9 cut(s) 54, 103, 1225, 1945, 2071, 2737, 2872, 2931, 3272
TaqII GACCGA 1 cut(s) 530
TatI WGTACW 2 cut(s) 375, 3777
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 9 cut(s) 359, 721, 1811, 2432, 3079, 3086, 3487, 3520, 3824
TseFI GTSAC 5 cut(s) 863, 1436, 1580, 1891, 3811
Tsp45I GTSAC 5 cut(s) 863, 1436, 1580, 1891, 3811
TspGWI ACGGA 1 cut(s) 1127
Van91I CCANNNNNTGG 1 cut(s) 2420
VneI GTGCAC 1 cut(s) 3947
VpaK11BI GGWCC 3 cut(s) 347, 2465, 3574
XagI CCTNNNNNAGG 2 cut(s) 3308, 3791
XapI RAATTY 9 cut(s) 223, 1070, 1324, 1430, 2076, 2201, 3041, 3099, 3914
XbaI TCTAGA 3 cut(s) 2392, 2611, 3790
XceI RCATGY 5 cut(s) 70, 651, 2239, 2993, 3370
XhoI CTCGAG 3 cut(s) 1944, 2070, 2736
XmaJI CCTAGG 1 cut(s) 2270
XmiI GTMKAC 2 cut(s) 2528, 2974
XmnI GAANNNNTTC 4 cut(s) 1177, 2214, 2279, 3917
Zsp2I ATGCAT 1 cut(s) 2995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.