Rh5AG479700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018199
Physical Location & Seq
Forward (+)
82386014 .. 82388020
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG479700.1

Sequence Viewer

Length: 360 bp
ATGGGGCCCCTAGGTTTTGAGCCATTTGCTTCTAATTGGTGCTCGGACTGCAATTTGAAGACACGATTAGTTCCTTGTAAGTTGGCTTCTATGAGCTGTTGCTTTACATCATCGATGTACCTTCGCCGTGCTTACTCATTTCGCTTGGCATGCTTGATCTTACATCTATTTTTGGTGGTATTCCATTTCATTTATCAATTTATTGACATGCCTATCCTGGTGTATGTTGGTGTTCATGTGGCTGTTATAGCTGGTGTTGCCATTGGAATTATCTTTTTATACTGCCATCCGATGGAAGTTGTGCAGAGAGAGAACGCGATTGCTGGGATTGCGGTTCTTGGCAACTATCCTGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.31

Weight (kDa)

8.2

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018199)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0048211
rosa_multiflora Rmu_co8214612.1_g000001 Rmu_sc0002928.1_g000003 Rmu_sc0033697.1_g000001
rosa_roxburghii Rroxscaffold_1G00007860
rosa_samantha Rh2BG430400 Rh2DG440300 Rh5AG479700 Rh5CG187300 Rh5DG512800
rosa_wichuraiana Rw5G044600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 292
AccII CGCG 1 cut(s) 317
AciI CCGC 1 cut(s) 332
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 2 cut(s) 96, 251
AluI AGCT 2 cut(s) 96, 251
Alw21I GWGCWC 1 cut(s) 44
AoxI GGCC 1 cut(s) 5
ApaI GGGCCC 1 cut(s) 9
AspA2I CCTAGG 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 5, 6
AvrII CCTAGG 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 9
BarI GAAGNNNNNNTAC 2 cut(s) 70, 102
BbsI GAAGAC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 44
BccI CCATC 2 cut(s) 286, 294
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 218
BfaI CTAG 1 cut(s) 11
BlnI CCTAGG 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 5, 6
BmiI GGNNCC 3 cut(s) 6, 7, 8
BmrFI CCNGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 1 cut(s) 7
BshVI ATCGAT 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 292
BsnI GGCC 1 cut(s) 7
Bsp120I GGGCCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 9, 44
Bsp143I GATC 1 cut(s) 156
BspACI CCGC 1 cut(s) 332
BspANI GGCC 1 cut(s) 7
BspDI ATCGAT 1 cut(s) 113
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 3 cut(s) 6, 7, 8
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 5 cut(s) 48, 150, 248, 257, 329
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 2 cut(s) 153, 211
BstSCI CCNGG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 9
BstUI CGCG 1 cut(s) 317
BstV2I GAAGAC 1 cut(s) 65
Bsu15I ATCGAT 1 cut(s) 113
BsuRI GGCC 1 cut(s) 7
BsuTUI ATCGAT 1 cut(s) 113
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 5, 6
ClaI ATCGAT 1 cut(s) 113
Csp6I GTAC 1 cut(s) 118
CviAII CATG 3 cut(s) 150, 208, 236
CviJI RGCY 6 cut(s) 7, 22, 86, 96, 242, 251
CviKI_1 RGCY 6 cut(s) 7, 22, 86, 96, 242, 251
CviQI GTAC 1 cut(s) 118
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 9
EcoO109I RGGNCCY 2 cut(s) 5, 6
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 3 cut(s) 153, 211, 239
FaiI YATR 7 cut(s) 92, 151, 209, 225, 237, 248, 280
FatI CATG 3 cut(s) 149, 207, 235
FokI GGATG 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 9
FspBI CTAG 1 cut(s) 11
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 1 cut(s) 7
Hin1II CATG 3 cut(s) 153, 211, 239
Hpy188I TCNGA 2 cut(s) 46, 291
HpyAV CCTTC 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 51, 304
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 150, 248, 257, 329
Hsp92II CATG 3 cut(s) 153, 211, 239
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 203, 230, 237, 309
MaeI CTAG 1 cut(s) 11
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 9, 44
MluCI AATT 4 cut(s) 34, 52, 197, 267
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 5 cut(s) 48, 150, 248, 257, 329
NdeII GATC 1 cut(s) 156
NlaIII CATG 3 cut(s) 153, 211, 239
NlaIV GGNNCC 3 cut(s) 6, 7, 8
NspI RCATGY 2 cut(s) 153, 211
PaeI GCATGC 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 3 cut(s) 6, 7, 8
PspOMI GGGCCC 1 cut(s) 5
PspPI GGNCC 2 cut(s) 5, 6
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 2 cut(s) 5, 6
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 2 cut(s) 9, 44
SetI ASST 4 cut(s) 16, 98, 123, 253
SphI GCATGC 1 cut(s) 153
Sse9I AATT 4 cut(s) 34, 52, 197, 267
SsiI CCGC 1 cut(s) 332
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 10
TaqI TCGA 1 cut(s) 113
TasI AATT 4 cut(s) 34, 52, 197, 267
TspDTI ATGAA 2 cut(s) 178, 224
Van91I CCANNNNNTGG 1 cut(s) 292
XceI RCATGY 2 cut(s) 153, 211
XmaJI CCTAGG 1 cut(s) 10
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.