Rh5CG187300

Somatic embryogenesis receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018199
Physical Location & Seq
Reverse (-)
18703670 .. 18711974
8305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG187300.1

Sequence Viewer

Length: 786 bp
ATGCGACTAGAGAGCAAAAATAGAAAAGGCTCGCCTGGATACGGAAAAAAGTACTGCTATTTCATGGATAAAAATCACAAAGTACACAAGGTTACATATCCAAACATTTTTATGATTCTCTCTATTACAAAGCCAAACAAAAAATTCAGCCTAAAAAAGAAAAAGCCCCAAAAGAAGCCAACCAGCTTTCTGGACATCTGGTACCCTGAACTTGGATCGCTTTCGGCTCTCGAGCGGCTGATTCTTCCTCAGAATGACATCTCAGGAACAATTCCATCTGAGCTTGGTAACCTGAAGACACTCCAGACTCTCATATTAGGTTATAATAGATTATCGGGCAGCATTCCTCCTACACTGGGTAATTTGCAATCACTTCGTACCTTGGGTCTCGACCATAACGAATTGAGTGGGAAAATCCCTTCCGGAATTGCAACCATTAAAAGCCTCCAAATTGCGTCTTTTATCGACAACAAAAGTTTATGTTGGGAGTTTTCGCCGACACCAATATATAAAGGCAGTTACCCATTATGCCAGAAGAACGCGGTGCTTTCTCATTTTTGCTTGGCATACTTGATCATATTGCTTTGTCTGCTGGTATTCGGGATCATTGCTGGTGCTATTCACATGCCTATCCTGGCGTTTAACATCATCTATGGTGTTCTTGTGGCTTTTGGAACTGGTGTTACCGTTGGACTTATCTTGTCATGCTGCTATGTGGTGGGAGTTGTGCAGAGGGAGAACATGATTGCCAAGAATGTGGCTCTTGGCAACCGTCCTGCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_4 LRR_8

Protein Analysis

261

Amino Acids

28.82

Weight (kDa)

9.69

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 70 - 157 9.6e-09 Leucine-rich repeat region
LRR_8 PF13855 76 - 135 1.3e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018199)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0048211
rosa_multiflora Rmu_co8214612.1_g000001 Rmu_sc0002928.1_g000003 Rmu_sc0033697.1_g000001
rosa_roxburghii Rroxscaffold_1G00007860
rosa_samantha Rh2BG430400 Rh2DG440300 Rh5AG479700 Rh5CG187300 Rh5DG512800
rosa_wichuraiana Rw5G044600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AccBSI CCGCTC 1 cut(s) 235
AccII CGCG 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 2 cut(s) 235, 542
AclWI GGATC 2 cut(s) 223, 611
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 4 cut(s) 53, 84, 203, 379
AfiI CCNNNNNNNGG 3 cut(s) 41, 212, 356
AjnI CCWGG 2 cut(s) 34, 633
AluBI AGCT 2 cut(s) 186, 283
AluI AGCT 2 cut(s) 186, 283
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 2 cut(s) 223, 611
Ama87I CYCGRG 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 339, 708
ApoI RAATTY 1 cut(s) 143
Asp718I GGTACC 1 cut(s) 201
AvaI CYCGRG 1 cut(s) 230
BanI GGYRCC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 351, 695
BccI CCATC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 2 cut(s) 36, 635
BciVI GTATCC 1 cut(s) 32
BclI TGATCA 1 cut(s) 573
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 1 cut(s) 8
BfuI GTATCC 1 cut(s) 32
BisI GCNGC 3 cut(s) 236, 340, 709
BlsI GCNGC 3 cut(s) 237, 341, 710
BmcAI AGTACT 1 cut(s) 53
Bme1390I CCNGG 2 cut(s) 36, 635
BmeT110I CYCGRG 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 2 cut(s) 36, 635
BmrI ACTGGG 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 212, 356
Bse1I ACTGG 2 cut(s) 360, 682
Bse3DI GCAATG 1 cut(s) 606
Bse8I GATNNNNATC 1 cut(s) 72
BseAI TCCGGA 1 cut(s) 422
BseBI CCWGG 2 cut(s) 36, 635
BseDI CCNNGG 1 cut(s) 381
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 3 cut(s) 41, 212, 356
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 3 cut(s) 263, 270, 276
BseNI ACTGG 2 cut(s) 360, 682
BseXI GCAGC 2 cut(s) 351, 695
BsgI GTGCAG 1 cut(s) 749
Bsh1236I CGCG 1 cut(s) 542
BshNI GGYRCC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 3 cut(s) 41, 212, 356
BsmAI GTCTC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 342
Bso31I GGTCTC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 230
Bsp13I TCCGGA 1 cut(s) 422
Bsp143I GATC 3 cut(s) 215, 573, 603
BspACI CCGC 2 cut(s) 235, 542
BspCNI CTCAG 3 cut(s) 262, 271, 275
BspEI TCCGGA 1 cut(s) 422
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 1 cut(s) 203
BspPI GGATC 2 cut(s) 223, 611
BspT107I GGYRCC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 606
BsrI ACTGG 2 cut(s) 360, 682
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 3 cut(s) 215, 573, 603
BssT1I CCWWGG 1 cut(s) 381
Bst2UI CCWGG 2 cut(s) 36, 635
Bst4CI ACNGT 2 cut(s) 688, 773
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 3 cut(s) 249, 262, 279
BstEII GGTNACC 1 cut(s) 287
BstFNI CGCG 1 cut(s) 542
BstKTI GATC 3 cut(s) 218, 576, 606
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 3 cut(s) 215, 573, 603
BstMWI GCNNNNNNNGC 1 cut(s) 589
BstNI CCWGG 2 cut(s) 36, 635
BstNSI RCATGY 1 cut(s) 628
BstPI GGTNACC 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 34, 633
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 351, 695
BstV2I GAAGAC 1 cut(s) 302
BstXI CCANNNNNNTGG 2 cut(s) 190, 757
BsuI GTATCC 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 353
Cac8I GCNNGC 1 cut(s) 32
CseI GACGC 1 cut(s) 444
Csp6I GTAC 4 cut(s) 52, 83, 202, 378
CviAII CATG 4 cut(s) 64, 625, 705, 742
CviQI GTAC 4 cut(s) 52, 83, 202, 378
DdeI CTNAG 3 cut(s) 249, 262, 279
DpnI GATC 3 cut(s) 217, 575, 605
DpnII GATC 3 cut(s) 215, 573, 603
Eco130I CCWWGG 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 230
Eco91I GGTNACC 1 cut(s) 287
EcoO65I GGTNACC 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 34, 633
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 4 cut(s) 67, 628, 708, 745
FatI CATG 4 cut(s) 63, 624, 704, 741
FbaI TGATCA 1 cut(s) 573
Fnu4HI GCNGC 3 cut(s) 236, 340, 709
Fsp4HI GCNGC 3 cut(s) 236, 340, 709
FspBI CTAG 1 cut(s) 8
GluI GCNGC 3 cut(s) 236, 340, 709
GsuI CTGGAG 1 cut(s) 287
HapII CCGG 1 cut(s) 423
HgaI GACGC 1 cut(s) 444
Hin1II CATG 4 cut(s) 67, 628, 708, 745
HinfI GANTC 3 cut(s) 115, 241, 307
HpaII CCGG 1 cut(s) 423
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 252, 280
Hpy188III TCNNGA 7 cut(s) 191, 230, 264, 304, 389, 423, 601
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 429
HpyCH4III ACNGT 2 cut(s) 688, 773
HpyCH4V TGCA 3 cut(s) 367, 431, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 589
HpyF3I CTNAG 3 cut(s) 249, 262, 279
Hsp92II CATG 4 cut(s) 67, 628, 708, 745
Kpn2I TCCGGA 1 cut(s) 422
KpnI GGTACC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 3 cut(s) 215, 573, 603
Lsp1109I GCAGC 2 cut(s) 351, 695
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 4 cut(s) 91, 287, 518, 682
MalI GATC 3 cut(s) 217, 575, 605
MbiI CCGCTC 1 cut(s) 235
MboI GATC 3 cut(s) 215, 573, 603
MboII GAAGA 3 cut(s) 236, 307, 547
MluCI AATT 6 cut(s) 143, 270, 361, 401, 426, 450
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 670
MnlI CCTC 4 cut(s) 258, 357, 455, 726
MroI TCCGGA 1 cut(s) 422
MseI TTAA 3 cut(s) 438, 642, 784
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 2 cut(s) 36, 635
Mva1269I GAATGC 1 cut(s) 342
MvaI CCWGG 2 cut(s) 36, 635
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 1 cut(s) 589
NdeII GATC 3 cut(s) 215, 573, 603
NlaIII CATG 4 cut(s) 67, 628, 708, 745
NlaIV GGNNCC 1 cut(s) 203
NspI RCATGY 1 cut(s) 628
PaeR7I CTCGAG 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 115, 241
PkrI GCNGC 3 cut(s) 237, 341, 710
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PsiI TTATAA 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 34, 633
PspEI GGTNACC 1 cut(s) 287
PspGI CCWGG 2 cut(s) 34, 633
PspN4I GGNNCC 1 cut(s) 203
PsrI GAACNNNNNNTAC 2 cut(s) 667, 699
RsaI GTAC 4 cut(s) 53, 84, 203, 379
RsaNI GTAC 4 cut(s) 52, 83, 202, 378
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 3 cut(s) 438, 642, 784
SatI GCNGC 3 cut(s) 236, 340, 709
Sau3AI GATC 3 cut(s) 215, 573, 603
ScaI AGTACT 1 cut(s) 53
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 36, 635
SetI ASST 6 cut(s) 93, 188, 285, 294, 322, 383
Sfr274I CTCGAG 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 6 cut(s) 143, 270, 361, 401, 426, 450
SsiI CCGC 2 cut(s) 235, 542
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 34, 633
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 2 cut(s) 688, 773
TaqI TCGA 3 cut(s) 231, 390, 465
TasI AATT 6 cut(s) 143, 270, 361, 401, 426, 450
TatI WGTACW 2 cut(s) 51, 82
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 2 cut(s) 115, 241
Tru1I TTAA 3 cut(s) 438, 642, 784
Tru9I TTAA 3 cut(s) 438, 642, 784
TscAI CASTG 1 cut(s) 360
TseI GCWGC 2 cut(s) 339, 708
TspDTI ATGAA 1 cut(s) 52
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 1 cut(s) 360
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 628
XhoI CTCGAG 1 cut(s) 230
XspI CTAG 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.