Rh5DG512800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018199
Physical Location & Seq
Forward (+)
79940637 .. 79946942
6306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG512800.1

Sequence Viewer

Length: 345 bp
ATGGGGCCCCTAGGTTTTGAGCCATTTGCTTCTAATTGGTGCTCGGACTGCAATTTGAAGACGATTAGTTCCTTGGTCTCCGAGCTGAGAGCTCCAAAAATGAAGAGCAGCAAAATCCTCATTGTCGTCGAGGACCTGCCGGACATTCCGGTGCCAAACGCCGTCGTTTCAAAGCGAGCGAGGGCCGCCGCTGCTTCTTTTACTTTAAACACAGGTGTTCATGTGGCTGTTATAGCTGGTGTTGCCGTTGGACTTATCTTTTTATACTGCCATCCGATGGAAGTTGTGCAGAGAGAGAACGCGATTGCTGAGATTGCGGTTCTTGGCAACTATCCTGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.13

Weight (kDa)

6.81

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018199)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0048211
rosa_multiflora Rmu_co8214612.1_g000001 Rmu_sc0002928.1_g000003 Rmu_sc0033697.1_g000001
rosa_roxburghii Rroxscaffold_1G00007860
rosa_samantha Rh2BG430400 Rh2DG440300 Rh5AG479700 Rh5CG187300 Rh5DG512800
rosa_wichuraiana Rw5G044600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 151
AccB7I CCANNNNNTGG 1 cut(s) 277
AccII CGCG 1 cut(s) 302
AciI CCGC 3 cut(s) 186, 189, 317
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 2 cut(s) 58, 171
AluBI AGCT 3 cut(s) 85, 92, 236
AluI AGCT 3 cut(s) 85, 92, 236
Alw21I GWGCWC 2 cut(s) 44, 94
Alw26I GTCTC 1 cut(s) 82
AoxI GGCC 2 cut(s) 5, 183
ApaI GGGCCC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 108, 191
AspA2I CCTAGG 1 cut(s) 10
AspS9I GGNCC 4 cut(s) 5, 6, 133, 183
AvaII GGWCC 1 cut(s) 133
AvrII CCTAGG 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 2 cut(s) 9, 94
BbsI GAAGAC 1 cut(s) 65
Bbv12I GWGCWC 2 cut(s) 44, 94
BbvI GCAGC 2 cut(s) 120, 178
BccI CCATC 2 cut(s) 271, 279
BceAI ACGGC 2 cut(s) 146, 230
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 144
BisI GCNGC 4 cut(s) 109, 186, 189, 192
BlnI CCTAGG 1 cut(s) 10
BlsI GCNGC 4 cut(s) 110, 187, 190, 193
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 4 cut(s) 5, 6, 133, 183
BmiI GGNNCC 4 cut(s) 6, 7, 8, 153
BpiI GAAGAC 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 10, 72
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 10, 72
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 77, 300
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 120, 178
BsgI GTGCAG 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 2 cut(s) 7, 185
BshNI GGYRCC 1 cut(s) 151
BsiHKAI GWGCWC 2 cut(s) 44, 94
BsiSI CCGG 2 cut(s) 140, 149
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 7, 185
Bso31I GGTCTC 1 cut(s) 82
Bsp120I GGGCCC 1 cut(s) 5
Bsp1286I GDGCHC 3 cut(s) 9, 44, 94
BspACI CCGC 3 cut(s) 186, 189, 317
BspANI GGCC 2 cut(s) 7, 185
BspCNI CTCAG 2 cut(s) 78, 301
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 4 cut(s) 6, 7, 8, 153
BspMI ACCTGC 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 10, 72
BssT1I CCWWGG 2 cut(s) 10, 72
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 86, 309
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 302
BstMAI GTCTC 1 cut(s) 82
BstMWI GCNNNNNNNGC 6 cut(s) 48, 185, 191, 233, 242, 314
BstSLI GKGCMC 1 cut(s) 9
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 120, 178
BstV2I GAAGAC 1 cut(s) 65
BsuRI GGCC 2 cut(s) 7, 185
BtsCI GGATG 1 cut(s) 271
BveI ACCTGC 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 177
Cfr13I GGNCC 4 cut(s) 5, 6, 133, 183
CviAII CATG 1 cut(s) 221
CviJI RGCY 7 cut(s) 7, 22, 85, 92, 185, 227, 236
CviKI_1 RGCY 7 cut(s) 7, 22, 85, 92, 185, 227, 236
DdeI CTNAG 2 cut(s) 86, 309
DraI TTTAAA 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 10, 72
Eco24I GRGCYC 2 cut(s) 9, 94
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 92
EcoO109I RGGNCCY 3 cut(s) 5, 6, 133
EcoT14I CCWWGG 2 cut(s) 10, 72
EcoT38I GRGCYC 2 cut(s) 9, 94
ErhI CCWWGG 2 cut(s) 10, 72
FaeI CATG 1 cut(s) 224
FaiI YATR 3 cut(s) 222, 233, 265
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 4 cut(s) 109, 186, 189, 192
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 2 cut(s) 9, 94
Fsp4HI GCNGC 4 cut(s) 109, 186, 189, 192
FspBI CTAG 1 cut(s) 11
GluI GCNGC 4 cut(s) 109, 186, 189, 192
HaeIII GGCC 2 cut(s) 7, 185
HapII CCGG 2 cut(s) 140, 149
Hin1II CATG 1 cut(s) 224
HpaII CCGG 2 cut(s) 140, 149
Hpy188I TCNGA 3 cut(s) 46, 82, 276
Hpy99I CGWCG 2 cut(s) 131, 167
HpyCH4V TGCA 2 cut(s) 51, 289
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 185, 191, 233, 242, 314
HpyF3I CTNAG 2 cut(s) 86, 309
Hsp92II CATG 1 cut(s) 224
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 5 cut(s) 149, 153, 162, 198, 222
Lsp1109I GCAGC 2 cut(s) 120, 178
MaeI CTAG 1 cut(s) 11
MboII GAAGA 2 cut(s) 70, 115
MhlI GDGCHC 3 cut(s) 9, 44, 94
MluCI AATT 2 cut(s) 34, 52
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 3 cut(s) 124, 128, 174
MseI TTAA 1 cut(s) 206
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 2 cut(s) 140, 149
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 6 cut(s) 48, 185, 191, 233, 242, 314
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 4 cut(s) 6, 7, 8, 153
PciSI GCTCTTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 4 cut(s) 110, 187, 190, 193
PpuMI RGGWCCY 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 133
PspN4I GGNNCC 4 cut(s) 6, 7, 8, 153
PspOMI GGGCCC 1 cut(s) 5
PspPI GGNCC 4 cut(s) 5, 6, 133, 183
PspPPI RGGWCCY 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 4 cut(s) 109, 186, 189, 192
Sau96I GGNCC 4 cut(s) 5, 6, 133, 183
SduI GDGCHC 3 cut(s) 9, 44, 94
SetI ASST 6 cut(s) 16, 87, 94, 138, 217, 238
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 2 cut(s) 34, 52
SsiI CCGC 3 cut(s) 186, 189, 317
SspMI CTAG 1 cut(s) 11
SstI GAGCTC 1 cut(s) 94
StyI CCWWGG 2 cut(s) 10, 72
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 34, 52
TauI GCSGC 2 cut(s) 188, 191
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TseI GCWGC 2 cut(s) 108, 191
TspDTI ATGAA 2 cut(s) 116, 209
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 133
XmaJI CCTAGG 1 cut(s) 10
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.