Rh6CG518800

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010799
Physical Location & Seq
Forward (+)
67545597 .. 67551873
6277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG518800.1

Sequence Viewer

Length: 1392 bp
ATGATTTCTTTTCATTGCAGACGATGGGTTTTGGAAAGGAAATTGGCTTCATCAGACGTGCCAAAGGAGGTACAAATCAACCTGATCAAAGATTTAGAGCGAAAAGAGACGGAGTTCATGCGACTTAAAAGGCATAGGATATGTGTTGACGATTTTGAGCCTTTGACCATCATTGGTAGGGGGGCTTTTGGTGAGGTTCGATTGTGTCGGGAGAAAAAATCTGGCAATATATATGCCATGAAAAAGTTGAAGAAATCTGAAATGCTTATGAGAGGACAGGTGGAACATGTTAGAGCTGAAAGAAACTTGCTGGCTGAAGTTGCCAGTCATTGCATAGTTAAACTTTACTACTCCTTTCAGGATGCTGAGTATTTATATTTAATAATGGAATATCTGCCTGGTGGTGACATGATGACTCTGCTGATGAGGGAGGACACCTTAAATGAAAGTGTGGCCAAATTTTACATTGCACAGAGTGTACTGGCAATAGAATCTATTCAGAAACACAACTACATACACAGAGACATTAAACCCGACAACCTTCTTCTAGATAAAAACGGTCACATGAAACTCTCGGATTTTGGCCTCTGTAAGCCTCTTGATTGTACAACTTTACCTGCACTGCATGAAAATAGATCTATGGATGATGAAAATTCAGCAGAACCAATGGATATCGATGGATGTTTTCCTGATGCGGATAACAGGAATAGTTGGAAAAGCCCCCTTGAACAGCTGCAGCATTGGCAGATGAACAGGAGGAAGCTGGCATTTTCGACTGTGGGGACACCCGACTATATTGCACCTGAAGTGTTATTAAAGAAGGGATATGGGATGGAATGCGACTGGTGGTCACTGGGAGCAATACTGTATGAAATGCTTGTTGGATACCCTCCATTTTATTCAGATGATCCCATAACTACATGCAGAAAGATTGTTCATTGGAGAAATCATTTAAAATTTCCAGAAGATGCAAGGCTGACACTCGAGGCTAAGGATCTCATTTGCAGGTTGCTGTGTGATGTTGAACATAGGCTTGGTGCACGTCAAATCAAATCTCATCCTTGGTTCAAGGACATTGTGTGGGACAAACTTTATGAAATGGAGGCAGCATTCAAACCAGAAGTGAATGGGGAGCTTGATACCCAAAACTTTATGAAGTTTGATGAGCTGGATCCTCCAGCATCAGCAAGAACTGGTTCAGGACCCTCGCGGAAGCTGCAATTGACTCCCAAAGATCTAAACTTTGTTGGCTATACATACAAGAACTTTGATGCTGTAAAAGGGCTTCGCCAAGCTTTTGCTGATGCTCGAGTAGAATTCACTACTGAACGGGCAGCAAGAGAAACAGAGGTACAAATGCTTGCATCATCTGGTGATCCTATGTTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

463

Amino Acids

53.66

Weight (kDa)

6.27

Isoelectric Point (pI)

27.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 53 - 201 4.4e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 57 - 200 2.6e-22 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 126 - 202 1e-06 ABC1 atypical kinase-like domain
Pkinase PF00069 250 - 356 2.2e-22 Protein kinase domain
Pkinase_C PF00433 375 - 420 1.4e-06 Protein kinase C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010799)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33080 AT4G33080
fragaria_vesca FvH4_2g31460 FvH4_2g31460
malus_domestica MD08G1066200.v1.1 MD15G1055000.v1.1
prunus_persica Prupe.1G408200_v2.0.a1
pyrus_communis pycom08g05490 pycom15g05190
rosa_chinensis RchiOBHm_Chr6g0311341
rosa_laevigata RLG00000010415
rosa_multiflora Rmu_sc0008536.1_g000007
rosa_roxburghii Rroxscaffold_7G00157700
rosa_rugosa Rorug06G0387700 Rorug06G0387700
rosa_samantha Rh6AG502400 Rh6BG513000 Rh6CG518800 Rh6DG505000
rosa_wichuraiana Rw6G043750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 625, 996
AccII CGCG 1 cut(s) 1210
AciI CCGC 2 cut(s) 695, 1210
AclWI GGATC 5 cut(s) 902, 1002, 1166, 1179, 1370
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 4 cut(s) 458, 652, 956, 1316
AcuI CTGAAG 2 cut(s) 336, 825
AdeI CACNNNGTG 1 cut(s) 476
AfaI GTAC 4 cut(s) 72, 480, 607, 1353
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 5 cut(s) 250, 728, 1025, 1069, 1114
AhdI GACNNNNNGTC 1 cut(s) 847
AjiI CACGTC 2 cut(s) 58, 1043
AjnI CCWGG 1 cut(s) 397
AjuI GAANNNNNNNTTGG 4 cut(s) 864, 896, 1017, 1049
AluBI AGCT 7 cut(s) 296, 733, 763, 1135, 1168, 1216, 1295
AluI AGCT 7 cut(s) 296, 733, 763, 1135, 1168, 1216, 1295
Alw21I GWGCWC 1 cut(s) 1042
Alw26I GTCTC 2 cut(s) 101, 516
Alw44I GTGCAC 1 cut(s) 1038
AlwI GGATC 5 cut(s) 902, 1002, 1166, 1179, 1370
Ama87I CYCGRG 2 cut(s) 983, 1308
AoxI GGCC 2 cut(s) 453, 583
ApaLI GTGCAC 1 cut(s) 1038
ApeKI GCWGC 5 cut(s) 733, 736, 1106, 1216, 1334
ApoI RAATTY 4 cut(s) 458, 652, 956, 1316
Asp700I GAANNNNTTC 2 cut(s) 495, 1195
AspS9I GGNCC 1 cut(s) 1202
AsuHPI GGTGA 3 cut(s) 203, 416, 1385
AvaI CYCGRG 2 cut(s) 983, 1308
AvaII GGWCC 1 cut(s) 1202
BaeGI GKGCMC 1 cut(s) 1042
BalI TGGCCA 1 cut(s) 455
BamHI GGATCC 1 cut(s) 1171
BarI GAAGNNNNNNTAC 2 cut(s) 1269, 1301
Bbv12I GWGCWC 1 cut(s) 1042
BbvI GCAGC 5 cut(s) 720, 748, 1118, 1203, 1346
BccI CCATC 4 cut(s) 18, 176, 671, 826
BcgI CGANNNNNNTGC 2 cut(s) 779, 813
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 1 cut(s) 878
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 2 cut(s) 101, 516
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 1 cut(s) 734
BfuAI ACCTGC 2 cut(s) 625, 996
BfuI GTATCC 1 cut(s) 878
BglII AGATCT 2 cut(s) 635, 1234
BisI GCNGC 5 cut(s) 734, 737, 1107, 1217, 1335
BlsI GCNGC 5 cut(s) 735, 738, 1108, 1218, 1336
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 1202
BmeRI GACNNNNNGTC 1 cut(s) 847
BmeT110I CYCGRG 2 cut(s) 983, 1308
BmgBI CACGTC 2 cut(s) 58, 1043
BmgT120I GGNCC 1 cut(s) 1202
BmiI GGNNCC 2 cut(s) 1173, 1204
BmrFI CCNGG 1 cut(s) 399
BmrI ACTGGG 1 cut(s) 863
BmsI GCATC 7 cut(s) 352, 682, 958, 1190, 1261, 1294, 1373
BmuI ACTGGG 1 cut(s) 863
BpmI CTGGAG 1 cut(s) 1161
Bpu10I CCTNAGC 1 cut(s) 990
Bsa29I ATCGAT 1 cut(s) 675
BsaJI CCNNGG 1 cut(s) 1061
Bse1I ACTGG 5 cut(s) 324, 486, 848, 858, 1198
Bse3DI GCAATG 3 cut(s) 13, 328, 465
BseBI CCWGG 1 cut(s) 399
BseCI ATCGAT 1 cut(s) 675
BseDI CCNNGG 1 cut(s) 1061
BseGI GGATG 5 cut(s) 367, 649, 686, 837, 1057
BseMI GCAATG 3 cut(s) 13, 328, 465
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 5 cut(s) 324, 486, 848, 858, 1198
BseSI GKGCMC 1 cut(s) 1042
BseXI GCAGC 5 cut(s) 720, 748, 1118, 1203, 1346
BsgI GTGCAG 1 cut(s) 603
Bsh1236I CGCG 1 cut(s) 1210
BshFI GGCC 2 cut(s) 455, 585
BshVI ATCGAT 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 1042
BsiHKCI CYCGRG 2 cut(s) 983, 1308
BslFI GGGAC 2 cut(s) 796, 1097
BsmAI GTCTC 2 cut(s) 101, 516
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 796, 1097
BsmI GAATGC 2 cut(s) 842, 1109
BsnI GGCC 2 cut(s) 455, 585
BsoBI CYCGRG 2 cut(s) 983, 1308
Bsp1286I GDGCHC 1 cut(s) 1042
Bsp1407I TGTACA 1 cut(s) 605
Bsp143I GATC 7 cut(s) 84, 635, 907, 994, 1171, 1234, 1375
BspACI CCGC 2 cut(s) 695, 1210
BspANI GGCC 2 cut(s) 455, 585
BspCNI CTCAG 1 cut(s) 358
BspDI ATCGAT 1 cut(s) 675
BspFNI CGCG 1 cut(s) 1210
BspLI GGNNCC 2 cut(s) 1173, 1204
BspMAI CTGCAG 1 cut(s) 738
BspMI ACCTGC 2 cut(s) 625, 996
BspPI GGATC 5 cut(s) 902, 1002, 1166, 1179, 1370
BsrDI GCAATG 3 cut(s) 13, 328, 465
BsrGI TGTACA 1 cut(s) 605
BsrI ACTGG 5 cut(s) 324, 486, 848, 858, 1198
BssECI CCNNGG 1 cut(s) 1061
BssMI GATC 7 cut(s) 84, 635, 907, 994, 1171, 1234, 1375
BssT1I CCWWGG 1 cut(s) 1061
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 3 cut(s) 560, 778, 867
BstAUI TGTACA 1 cut(s) 605
BstC8I GCNNGC 3 cut(s) 312, 765, 1362
BstDEI CTNAG 2 cut(s) 366, 990
BstF5I GGATG 5 cut(s) 367, 649, 686, 837, 1057
BstFNI CGCG 1 cut(s) 1210
BstKTI GATC 7 cut(s) 87, 638, 910, 997, 1174, 1237, 1378
BstMAI GTCTC 2 cut(s) 101, 516
BstMBI GATC 7 cut(s) 84, 635, 907, 994, 1171, 1234, 1375
BstMWI GCNNNNNNNGC 3 cut(s) 320, 742, 1216
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 2 cut(s) 290, 924
BstSCI CCNGG 1 cut(s) 397
BstSFI CTRYAG 1 cut(s) 734
BstSLI GKGCMC 1 cut(s) 1042
BstUI CGCG 1 cut(s) 1210
BstV1I GCAGC 5 cut(s) 720, 748, 1118, 1203, 1346
BstX2I RGATCY 4 cut(s) 635, 994, 1171, 1234
BstYI RGATCY 4 cut(s) 635, 994, 1171, 1234
Bsu15I ATCGAT 1 cut(s) 675
BsuI GTATCC 1 cut(s) 878
BsuRI GGCC 2 cut(s) 455, 585
BsuTUI ATCGAT 1 cut(s) 675
BtrI CACGTC 2 cut(s) 58, 1043
BtsCI GGATG 5 cut(s) 367, 649, 686, 837, 1057
BtsI GCAGTG 1 cut(s) 620
BtsIMutI CAGTG 2 cut(s) 620, 851
BveI ACCTGC 2 cut(s) 625, 996
Cac8I GCNNGC 3 cut(s) 312, 765, 1362
Cfr13I GGNCC 1 cut(s) 1202
ClaI ATCGAT 1 cut(s) 675
Csp6I GTAC 4 cut(s) 71, 479, 606, 1352
CviAII CATG 7 cut(s) 118, 238, 287, 409, 565, 626, 921
CviQI GTAC 4 cut(s) 71, 479, 606, 1352
DdeI CTNAG 2 cut(s) 366, 990
DpnI GATC 7 cut(s) 86, 637, 909, 996, 1173, 1236, 1377
DpnII GATC 7 cut(s) 84, 635, 907, 994, 1171, 1234, 1375
DraI TTTAAA 1 cut(s) 954
DraIII CACNNNGTG 1 cut(s) 476
DriI GACNNNNNGTC 1 cut(s) 847
EaeI YGGCCR 1 cut(s) 453
Eam1105I GACNNNNNGTC 1 cut(s) 847
Eco130I CCWWGG 1 cut(s) 1061
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 1 cut(s) 1202
Eco57I CTGAAG 2 cut(s) 336, 825
Eco88I CYCGRG 2 cut(s) 983, 1308
EcoO109I RGGNCCY 1 cut(s) 1202
EcoRI GAATTC 1 cut(s) 1316
EcoRII CCWGG 1 cut(s) 397
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 1061
ErhI CCWWGG 1 cut(s) 1061
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 7 cut(s) 121, 241, 290, 412, 568, 629, 924
FaqI GGGAC 2 cut(s) 796, 1097
FatI CATG 7 cut(s) 117, 237, 286, 408, 564, 625, 920
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 5 cut(s) 734, 737, 1107, 1217, 1335
FokI GGATG 5 cut(s) 374, 656, 693, 844, 1044
Fsp4HI GCNGC 5 cut(s) 734, 737, 1107, 1217, 1335
FspBI CTAG 1 cut(s) 548
GluI GCNGC 5 cut(s) 734, 737, 1107, 1217, 1335
GsuI CTGGAG 1 cut(s) 1161
HaeIII GGCC 2 cut(s) 455, 585
Hin1II CATG 7 cut(s) 121, 241, 290, 412, 568, 629, 924
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 1293
HinfI GANTC 3 cut(s) 415, 491, 1225
HphI GGTGA 3 cut(s) 203, 416, 1385
Hpy166II GTNNAC 3 cut(s) 148, 479, 1040
Hpy188I TCNGA 5 cut(s) 55, 259, 501, 577, 904
Hpy188III TCNNGA 7 cut(s) 209, 359, 548, 599, 689, 962, 1200
Hpy8I GTNNAC 3 cut(s) 148, 479, 1040
HpyAV CCTTC 2 cut(s) 551, 814
HpyCH4III ACNGT 3 cut(s) 560, 778, 867
HpyCH4IV ACGT 2 cut(s) 57, 1042
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 742, 1216
HpyF3I CTNAG 2 cut(s) 366, 990
HpySE526I ACGT 2 cut(s) 57, 1042
Hsp92II CATG 7 cut(s) 121, 241, 290, 412, 568, 629, 924
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 7 cut(s) 84, 635, 907, 994, 1171, 1234, 1375
LmnI GCTCC 2 cut(s) 857, 1132
Lsp1109I GCAGC 5 cut(s) 720, 748, 1118, 1203, 1346
LweI GCATC 7 cut(s) 352, 682, 958, 1190, 1261, 1294, 1373
MaeI CTAG 1 cut(s) 548
MaeII ACGT 2 cut(s) 57, 1042
MaeIII GTNAC 4 cut(s) 404, 560, 849, 1383
MalI GATC 7 cut(s) 86, 637, 909, 996, 1173, 1236, 1377
MboI GATC 7 cut(s) 84, 635, 907, 994, 1171, 1234, 1375
MboII GAAGA 3 cut(s) 262, 536, 977
MfeI CAATTG 1 cut(s) 1220
MflI RGATCY 4 cut(s) 635, 994, 1171, 1234
MhlI GDGCHC 1 cut(s) 1042
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 6 cut(s) 41, 458, 652, 956, 1220, 1316
MluNI TGGCCA 1 cut(s) 455
MlyI GAGTC 2 cut(s) 409, 1219
MmeI TCCRAC 2 cut(s) 692, 862
Mox20I TGGCCA 1 cut(s) 455
MroXI GAANNNNTTC 2 cut(s) 495, 1195
MscI TGGCCA 1 cut(s) 455
MseI TTAA 7 cut(s) 126, 339, 380, 440, 528, 815, 953
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 733
MspR9I CCNGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 1220
Mva1269I GAATGC 2 cut(s) 842, 1109
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 1210
MwoI GCNNNNNNNGC 3 cut(s) 320, 742, 1216
NdeII GATC 7 cut(s) 84, 635, 907, 994, 1171, 1234, 1375
NlaIII CATG 7 cut(s) 121, 241, 290, 412, 568, 629, 924
NlaIV GGNNCC 2 cut(s) 1173, 1204
NmuCI GTSAC 3 cut(s) 404, 560, 849
NspI RCATGY 2 cut(s) 290, 924
PaeR7I CTCGAG 2 cut(s) 983, 1308
PciI ACATGT 1 cut(s) 286
PctI GAATGC 2 cut(s) 842, 1109
PdmI GAANNNNTTC 2 cut(s) 495, 1195
PfeI GAWTC 1 cut(s) 491
PkrI GCNGC 5 cut(s) 735, 738, 1108, 1218, 1336
PleI GAGTC 2 cut(s) 409, 1219
PpsI GAGTC 2 cut(s) 409, 1219
PpuMI RGGWCCY 1 cut(s) 1202
PscI ACATGT 1 cut(s) 286
Psp5II RGGWCCY 1 cut(s) 1202
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 1173, 1204
PspPI GGNCC 1 cut(s) 1202
PspPPI RGGWCCY 1 cut(s) 1202
PspXI VCTCGAGB 2 cut(s) 983, 1308
PstI CTGCAG 1 cut(s) 738
PsuI RGATCY 4 cut(s) 635, 994, 1171, 1234
PvuII CAGCTG 1 cut(s) 733
RsaI GTAC 4 cut(s) 72, 480, 607, 1353
RsaNI GTAC 4 cut(s) 71, 479, 606, 1352
SaqAI TTAA 7 cut(s) 126, 339, 380, 440, 528, 815, 953
SatI GCNGC 5 cut(s) 734, 737, 1107, 1217, 1335
Sau3AI GATC 7 cut(s) 84, 635, 907, 994, 1171, 1234, 1375
Sau96I GGNCC 1 cut(s) 1202
SchI GAGTC 2 cut(s) 409, 1219
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 1042
SfaNI GCATC 7 cut(s) 352, 682, 958, 1190, 1261, 1294, 1373
SfcI CTRYAG 1 cut(s) 734
Sfr274I CTCGAG 2 cut(s) 983, 1308
SinI GGWCC 1 cut(s) 1202
SlaI CTCGAG 2 cut(s) 983, 1308
SmlI CTYRAG 2 cut(s) 983, 1308
SmoI CTYRAG 2 cut(s) 983, 1308
Sse9I AATT 6 cut(s) 41, 458, 652, 956, 1220, 1316
SsiI CCGC 2 cut(s) 695, 1210
SspMI CTAG 1 cut(s) 548
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 1 cut(s) 1061
TaaI ACNGT 3 cut(s) 560, 778, 867
TaiI ACGT 2 cut(s) 60, 1045
TaqI TCGA 5 cut(s) 199, 675, 773, 984, 1309
TasI AATT 6 cut(s) 41, 458, 652, 956, 1220, 1316
TatI WGTACW 2 cut(s) 478, 605
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 7 cut(s) 126, 339, 380, 440, 528, 815, 953
Tru9I TTAA 7 cut(s) 126, 339, 380, 440, 528, 815, 953
TscAI CASTG 2 cut(s) 627, 858
TseFI GTSAC 3 cut(s) 404, 560, 849
TseI GCWGC 5 cut(s) 733, 736, 1106, 1216, 1334
Tsp45I GTSAC 3 cut(s) 404, 560, 849
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 2 cut(s) 627, 858
VneI GTGCAC 1 cut(s) 1038
VpaK11BI GGWCC 1 cut(s) 1202
XapI RAATTY 4 cut(s) 458, 652, 956, 1316
XbaI TCTAGA 1 cut(s) 547
XceI RCATGY 2 cut(s) 290, 924
XhoI CTCGAG 2 cut(s) 983, 1308
XmnI GAANNNNTTC 2 cut(s) 495, 1195
XspI CTAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.