Rh7BG153100

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012794
Physical Location & Seq
Forward (+)
11348752 .. 11358310
9559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG153100.1

Sequence Viewer

Length: 2994 bp
ATGGAGAATGCAGTGGGTGGGGAAGCCACCCCACCTGATTCGACGGAGGGTGCACAGCTTCAGAGCAAGGAGAACGGGCATGCATTGAGACATGGAAATGACCACATGTTCGACTACCAAGAGATGCGTATACCGGGTGGTGACGAAGATCATTCGCTGCGTATACCAGTTGGAAGCAATTGTCCTGAGAGCTCAAGTCAGGAGTGTTTTGTAAAACAACCGTATGATGGCTTAGTAGGCTTATATCCAAGCGGATCAAGGAGCGGGAATGGTGGGAGTTCACGAGTCAATACTGCATTCAGAGATTATGGTCAGATGAGGTCAAATGATTTGGAGAAAGTGGAGTACCCATCTCTGGATGATATTATGGCTCAGAGGGCAAATAGTGACAATCTGGTTGAAGTTGTGGCGGAATTGACAAATACTGTAGATGGAGGGGTTTCAGGCAATTCATATGGAGGTATCCGGACAAAAATGCTTTCCAAATCAAGATCAGAATTTTATGTTAAGTCTACATTGAAGGGTAAGGGTGTTATTTTCAAAGGTCCAAATCATGATGGCGGTCATGTTGAATCTAAGAACCTTAACAGTACAAAGGTTACTGGTGGTTCTAGGGCTACTTCTGATTCAATACAGAGTTTGGATGCCAAAATTGTTATGCCTTCTTCCAATGATGTGAACGTTGTGCCCAAACCACCAGCCTTGGAACATGATGAAATCAGTTTAAGAGAATGGCTGAGAATTGGACGTCCTAAAGTCAATAAAGTTGAGTGTCTGTATGTATTCAAACAAATTGCAAATCTCGTGGATCATTTTCACTCTCAAGGAGTTGCTTTGCAAGAATTGCGCCCTTCTTTTTTTAAGGTGTCACCTTCAAATGAGGTCAAGTATGTTGGCTTACCAATCCCAAAAGAGATATTAGAAAGTTCTATGGATCAAGGTATCTGTCATTCAGAAAATAGTCCAATGAGAAAAATGTCAGGTGAGCAAGAATTTGCTTCTGTTGGTTCCAGTGCAAAGAAGCAAAAGATCAGCCAGGACACTAGATTAGTTAGGCAATGGCCTCAGTTCCCCACTAGTTCCCGTTTCCAACGTGAAACTAGGAATACTAGCCACATCAACATCAATGGTCTGCAAAATAGAAGTCCTCATATGTATAATGCAGCTCAACAACACTTGACTTCAATCACTGAGCAATTGGAAGAAAAGTGGTATATTAGTCCTGAAGAACTCAATGAAGGGAGCTGTACAGTTTTGTCAAATATCTACAGTCTGGGCGTTCTTCTTTTTGAGTTGCTGGCCCGTTTTGACTCAAATAGTGCCGTTGTCTCAGCAATGTTCAGTCTGCGTCATAGAATTCTTCCTCCGAATTTTCTGTCAGAAAACGCTAAAGAGGCTGGATTTTGTCTTTGGTTACTTCATCCTGAACCGTCTTCACGTCCAACAACAAGGGAAATTCTACAATCAGAAGTAGTTAATGGATTACAGGAGATGTGTGAAGAGAAAGTGGCATCATCTGTGGTTGAAGAGGATGCTGAATTGGAACTATTATCCCATTTCCTCACGTCACTGAAAGAAAAGAAGCAGAAGGATGCCTCCAAGTTGATGGCAAGCATTAGGGTTTTAGAAGCAGATGCTGAAGAAGCTGAGAGGAGGCACTATTCAAGAAATCCCGACTGGTACAAAGAGTCCCTCGGTGGATGGAAAAACGCATGTAAAGAAGCTTCAAGATCAGAGGTGCTTTCTCCATTACCCCCTCTTCCTAGTTCAAATGAGTCAAGGTTGACGAGGAATATTGATCAGCTTGAGAGTGCTTACTTCTCTATGAGATCTAGGATTCAGCCTCCTGAAGCTGATTGTACTATACGCATAGATAAAGAGTTATTAAAATCTCGCAAGAATTGGTATTTGGAATCAGATGATGACGAAAAGAAGACTCCTACTGATCAATTGGGAGCTATCTTTGATGGTTTATGCAAGTATGATCGGTACAGTAAGTTTGAAGTATGTGGAGTACTAAGAAATGGAGATTTCAACAGTAACTCAAATTTGATTTGCTCTTTGAGTTTTGATCGGGATGAGGACTACATCGCTTCTGCTGGGGTTTCAAAGAAAATAAAGATTTATGAGTTCAATGCACTTTTCAATGATTCTGTTGATATTCATTATCCATCGATCGAGATGTCAAATGAATCAAAGATTAGCTGTATTTGCTGGAACAACTACATAAAAAACTATCTCACTTCAACTGATTATGAAGGTGTAGTGAAGTTGTGGGATGTCAGCACTGGTCAAGAGTTTGCTCGATACAGAGGGCATGAACAAAAGGCTTGGTCTGTTGACTTCTCTCAAGTAGATCCTACAAAATTAGCCAGCGGGAGTGATGACGGTTCTGTGAAACTCTGGAGCATTAATGAGAAAAACTGTTTAGGTACCATCAGAAACAGAAACATTGCAAATGTATGCTGTGTACAGTTCTCTGCTCACTCCACTAATTTGGTGGCCTTTGGGTCTGCGGACTACAACACATATTGCTATGATCTTCGTAATGCTAGAACGCCCTGGTGTGTATTGGTTGGTCACCAAAAAAGCGTAAGCTATGTCAAATTCTTGGACTCTGAGACCCTTGTTTCTGCATCCACTGACAACACATTAAAGCTATGGGATCTCAACAAAACCACTGCCAGTGGTCCATCCACCAATGCTTGCAGCTTAACCCTCAGTGGGCATACCAATGAGAAGAACTTTGTGGGCTTATCCGTTTCTAATGGTTATATAGCATGCGGTTCAGAAACAAATGAGGTCTATGCTTATTATAGATCTCTGCCTATGCCGATCACTTCATACAAATTTGGCTCCATTGATCCTATAACCGGAAAGGAGACTGATGATATTAATGGATCATTTGTTTCAAGTGTCTGCTGGAGACAGAAATCAAACATGGTGGTTGCCGCCAATTCAAGCGGGTGCATAAAAGTGTTGCAGATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0080008 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Pkinase WD40

Protein Analysis

997

Amino Acids

111.13

Weight (kDa)

5.76

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 396 - 490 3.4e-06 Protein kinase domain
Beta-prop_WDR3_1st PF25173 681 - 847 8.9e-16 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 681 - 938 2.8e-32 WDR5 beta-propeller domain
WDR55 PF24796 683 - 814 7.3e-07 WDR55
Beta-prop_TEP1_2nd PF25047 684 - 803 8.7e-06 TEP-1 second beta-propeller
Beta-prop_EML PF23409 685 - 893 1.1e-07 Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta PF25391 685 - 850 8.2e-09 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 686 - 841 9.8e-17 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 687 - 806 2.7e-06 WDR3 second beta-propeller domain
Beta-prop_RIG_2nd PF23775 690 - 774 8.4e-08 RIG second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 696 - 888 2.9e-13 WDR36/Utp21 first beta-propeller
WD40_Prp19 PF24814 729 - 816 5.1e-08 Prp19 WD40 domain
Beta-prop_WDR19_1st PF23389 737 - 894 3.3e-06 WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 745 - 893 8.6e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 748 - 894 1.2e-11 Echinoderm microtubule-associated protein second beta-propeller
EIF3I PF24805 749 - 835 2.4e-07 EIF3I
WD40 PF00400 768 - 803 7.4e-06 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 776 - 895 1.3e-13 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 788 - 938 1.3e-19 WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd PF25047 790 - 893 2.7e-10 TEP-1 second beta-propeller
WD40_WDHD1_1st PF24817 816 - 991 3.6e-08 WDHD1 first WD40 domain
WD40_Prp19 PF24814 819 - 931 7.7e-10 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 821 - 995 3.2e-10 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012794)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11110
fragaria_vesca FvH4_5g04010 FvH4_5g04010
malus_domestica MD06G1101400.v1.1 MD14G1121100.v1.1
prunus_persica Prupe.5G114800_v2.0.a1 Prupe.5G114800_v2.0.a1
pyrus_communis pycom06g09660
rosa_chinensis RchiOBHm_Chr7g0195501
rosa_laevigata RLG00000004114
rosa_multiflora Rmu_ssc0000078.1_g000001
rosa_roxburghii Rroxscaffold_3G00260410
rosa_rugosa Rorug07G0023900
rosa_samantha Rh7AG151400 Rh7BG153100 Rh7CG156600 Rh7DG152400
rosa_wichuraiana Rw7G012930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 751
Acc65I GGTACC 1 cut(s) 2432
AccB1I GGYRCC 1 cut(s) 2432
AccBSI CCGCTC 1 cut(s) 264
AccI GTMKAC 3 cut(s) 130, 163, 512
AccIII TCCGGA 1 cut(s) 465
AciI CCGC 9 cut(s) 252, 264, 410, 561, 2376, 2516, 2784, 2952, 2964
AclI AACGTT 1 cut(s) 681
AclWI GGATC 7 cut(s) 262, 816, 942, 2351, 2673, 2858, 2908
AcsI RAATTY 8 cut(s) 497, 992, 1356, 1369, 1455, 2047, 2606, 2849
AcuI CTGAAG 4 cut(s) 44, 1245, 1659, 1869
AcyI GRCGYC 1 cut(s) 748
AfaI GTAC 9 cut(s) 347, 592, 1249, 1682, 1861, 1991, 2016, 2434, 2472
AfiI CCNNNNNNNGG 4 cut(s) 227, 355, 2724, 2873
AflIII ACRYGT 1 cut(s) 105
AhlI ACTAGT 1 cut(s) 1076
AjiI CACGTC 2 cut(s) 1439, 1566
AjnI CCWGG 2 cut(s) 1035, 2561
AjuI GAANNNNNNNTTGG 2 cut(s) 1892, 1924
Alw21I GWGCWC 2 cut(s) 55, 194
Alw26I GTCTC 5 cut(s) 82, 1333, 2615, 2876, 2920
Alw44I GTGCAC 1 cut(s) 51
AlwI GGATC 7 cut(s) 262, 816, 942, 2351, 2673, 2858, 2908
AlwNI CAGNNNCTG 1 cut(s) 1637
Aor13HI TCCGGA 1 cut(s) 465
AoxI GGCC 3 cut(s) 1061, 1299, 2502
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 157, 1163, 2709
ApoI RAATTY 8 cut(s) 497, 992, 1356, 1369, 1455, 2047, 2606, 2849
ArsI GACNNNNNNTTYG 6 cut(s) 92, 124, 1129, 1161, 1361, 1393
AseI ATTAAT 2 cut(s) 2412, 2895
Asp718I GGTACC 1 cut(s) 2432
AspLEI GCGC 1 cut(s) 849
AspS9I GGNCC 3 cut(s) 545, 1300, 2690
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 4 cut(s) 152, 861, 995, 2573
AvaII GGWCC 2 cut(s) 545, 2690
BaeGI GKGCMC 2 cut(s) 55, 690
BanI GGYRCC 1 cut(s) 2432
BanII GRGCYC 1 cut(s) 194
BarI GAAGNNNNNNTAC 2 cut(s) 1708, 1740
BauI CACGAG 2 cut(s) 282, 803
BbsI GAAGAC 2 cut(s) 1425, 1940
Bbv12I GWGCWC 2 cut(s) 55, 194
BbvI GCAGC 3 cut(s) 144, 1175, 2721
BceAI ACGGC 1 cut(s) 1307
BciT130I CCWGG 2 cut(s) 1037, 2563
BciVI GTATCC 1 cut(s) 473
BclI TGATCA 2 cut(s) 1798, 1945
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 5 cut(s) 82, 1333, 2615, 2876, 2920
BcuI ACTAGT 1 cut(s) 1076
BfaI CTAG 8 cut(s) 612, 1044, 1077, 1101, 1110, 1764, 1833, 2553
BfmI CTRYAG 2 cut(s) 426, 1267
BfuI GTATCC 1 cut(s) 473
BglII AGATCT 2 cut(s) 1829, 2819
BisI GCNGC 4 cut(s) 158, 1164, 2710, 2952
BlsI GCNGC 4 cut(s) 159, 1165, 2711, 2953
BmcAI AGTACT 1 cut(s) 2016
Bme1390I CCNGG 3 cut(s) 135, 1037, 2563
Bme18I GGWCC 2 cut(s) 545, 2690
BmgBI CACGTC 2 cut(s) 1439, 1566
BmgT120I GGNCC 3 cut(s) 545, 1300, 2690
BmiI GGNNCC 3 cut(s) 1009, 2434, 2857
BmrFI CCNGG 3 cut(s) 135, 1037, 2563
BmsI GCATC 7 cut(s) 114, 634, 1520, 1522, 1582, 1624, 2645
BpiI GAAGAC 2 cut(s) 1425, 1940
BpmI CTGGAG 2 cut(s) 2425, 2944
BpuEI CTTGAG 4 cut(s) 178, 807, 1826, 2334
BpuMI CCSGG 1 cut(s) 135
Bsa29I ATCGAT 1 cut(s) 2174
BsaHI GRCGYC 1 cut(s) 748
BsaI GGTCTC 1 cut(s) 2615
BsaJI CCNNGG 3 cut(s) 702, 1693, 2561
BsaWI WCCGGW 2 cut(s) 465, 2873
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 355, 2724, 2873
Bse1I ACTGG 6 cut(s) 167, 607, 1011, 1682, 2293, 2685
Bse3DI GCAATG 3 cut(s) 1064, 1341, 2451
BseAI TCCGGA 1 cut(s) 465
BseBI CCWGG 2 cut(s) 1037, 2563
BseCI ATCGAT 1 cut(s) 2174
BseDI CCNNGG 3 cut(s) 702, 1693, 2561
BseLI CCNNNNNNNGG 4 cut(s) 227, 355, 2724, 2873
BseMI GCAATG 3 cut(s) 1064, 1341, 2451
BseMII CTCAG 9 cut(s) 177, 386, 728, 1079, 1182, 1344, 1638, 2610, 2734
BseNI ACTGG 6 cut(s) 167, 607, 1011, 1682, 2293, 2685
BseRI GAGGAG 1 cut(s) 1666
BseSI GKGCMC 2 cut(s) 55, 690
BseXI GCAGC 3 cut(s) 144, 1175, 2721
BseYI CCCAGC 1 cut(s) 2099
Bsh1285I CGRYCG 1 cut(s) 2178
BshFI GGCC 3 cut(s) 1063, 1301, 2504
BshNI GGYRCC 1 cut(s) 2432
BshVI ATCGAT 1 cut(s) 2174
BsiEI CGRYCG 1 cut(s) 2178
BsiHKAI GWGCWC 2 cut(s) 55, 194
BsiSI CCGG 3 cut(s) 134, 466, 2874
BslFI GGGAC 1 cut(s) 1675
BslI CCNNNNNNNGG 4 cut(s) 227, 355, 2724, 2873
BsmAI GTCTC 5 cut(s) 82, 1333, 2615, 2876, 2920
BsmFI GGGAC 1 cut(s) 1675
BsmI GAATGC 2 cut(s) 13, 296
BsnI GGCC 3 cut(s) 1063, 1301, 2504
Bso31I GGTCTC 1 cut(s) 2615
Bsp1286I GDGCHC 3 cut(s) 55, 194, 690
Bsp13I TCCGGA 1 cut(s) 465
Bsp1407I TGTACA 2 cut(s) 1247, 2470
BspACI CCGC 9 cut(s) 252, 264, 410, 561, 2376, 2516, 2784, 2952, 2964
BspANI GGCC 3 cut(s) 1063, 1301, 2504
BspCNI CTCAG 9 cut(s) 178, 385, 729, 1078, 1183, 1343, 1639, 2611, 2733
BspDI ATCGAT 1 cut(s) 2174
BspEI TCCGGA 1 cut(s) 465
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 3 cut(s) 1009, 2434, 2857
BspPI GGATC 7 cut(s) 262, 816, 942, 2351, 2673, 2858, 2908
BspT107I GGYRCC 1 cut(s) 2432
BspTNI GGTCTC 1 cut(s) 2615
BsrBI CCGCTC 1 cut(s) 264
BsrDI GCAATG 3 cut(s) 1064, 1341, 2451
BsrGI TGTACA 2 cut(s) 1247, 2470
BsrI ACTGG 6 cut(s) 167, 607, 1011, 1682, 2293, 2685
BssECI CCNNGG 3 cut(s) 702, 1693, 2561
BssNAI GTATAC 2 cut(s) 131, 164
BssNI GRCGYC 1 cut(s) 748
BssSI CACGAG 2 cut(s) 282, 803
BssT1I CCWWGG 1 cut(s) 702
Bst1107I GTATAC 2 cut(s) 131, 164
Bst2BI CACGAG 2 cut(s) 282, 803
Bst2UI CCWGG 2 cut(s) 1037, 2563
Bst6I CTCTTC 3 cut(s) 1494, 1521, 1764
BstACI GRCGYC 1 cut(s) 748
BstAPI GCANNNNNTGC 1 cut(s) 844
BstAUI TGTACA 2 cut(s) 1247, 2470
BstC8I GCNNGC 6 cut(s) 81, 1299, 1612, 2374, 2707, 2782
BstEII GGTNACC 1 cut(s) 2579
BstHHI GCGC 1 cut(s) 849
BstMAI GTCTC 5 cut(s) 82, 1333, 2615, 2876, 2920
BstMCI CGRYCG 1 cut(s) 2178
BstMWI GCNNNNNNNGC 6 cut(s) 237, 377, 844, 1394, 1643, 2211
BstNI CCWGG 2 cut(s) 1037, 2563
BstNSI RCATGY 4 cut(s) 83, 109, 1716, 2784
BstPI GGTNACC 1 cut(s) 2579
BstSCI CCNGG 3 cut(s) 133, 1035, 2561
BstSFI CTRYAG 2 cut(s) 426, 1267
BstSLI GKGCMC 2 cut(s) 55, 690
BstV1I GCAGC 3 cut(s) 144, 1175, 2721
BstV2I GAAGAC 2 cut(s) 1425, 1940
BstX2I RGATCY 4 cut(s) 1829, 2356, 2665, 2819
BstXI CCANNNNNNTGG 2 cut(s) 1606, 2497
BstYI RGATCY 4 cut(s) 1829, 2356, 2665, 2819
BstZ17I GTATAC 2 cut(s) 131, 164
Bsu15I ATCGAT 1 cut(s) 2174
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 3 cut(s) 1063, 1301, 2504
BsuTUI ATCGAT 1 cut(s) 2174
BtgZI GCGATG 1 cut(s) 2074
BtrI CACGTC 2 cut(s) 1439, 1566
BtsI GCAGTG 2 cut(s) 18, 2679
BtsIMutI CAGTG 9 cut(s) 18, 1018, 1188, 1568, 2286, 2640, 2679, 2692, 2728
Cac8I GCNNGC 6 cut(s) 81, 1299, 1612, 2374, 2707, 2782
CaiI CAGNNNCTG 1 cut(s) 1637
CciI TCATGA 1 cut(s) 553
CfoI GCGC 1 cut(s) 849
Cfr13I GGNCC 3 cut(s) 545, 1300, 2690
ClaI ATCGAT 1 cut(s) 2174
CseI GACGC 1 cut(s) 1337
Csp6I GTAC 9 cut(s) 346, 591, 1248, 1681, 1860, 1990, 2015, 2433, 2471
CspCI CAANNNNNGTGG 6 cut(s) 684, 719, 786, 821, 2925, 2960
CviQI GTAC 9 cut(s) 346, 591, 1248, 1681, 1860, 1990, 2015, 2433, 2471
Eam1104I CTCTTC 3 cut(s) 1494, 1521, 1764
EarI CTCTTC 3 cut(s) 1494, 1521, 1764
EciI GGCGGA 1 cut(s) 425
Ecl136II GAGCTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 2615
Eco47I GGWCC 2 cut(s) 545, 2690
Eco53kI GAGCTC 1 cut(s) 192
Eco57I CTGAAG 4 cut(s) 44, 1245, 1659, 1869
Eco91I GGTNACC 1 cut(s) 2579
EcoICRI GAGCTC 1 cut(s) 192
EcoO65I GGTNACC 1 cut(s) 2579
EcoRI GAATTC 1 cut(s) 1356
EcoRII CCWGG 2 cut(s) 1035, 2561
EcoT14I CCWWGG 1 cut(s) 702
EcoT22I ATGCAT 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 702
FaqI GGGAC 1 cut(s) 1675
FauI CCCGC 3 cut(s) 257, 2369, 2957
FauNDI CATATG 2 cut(s) 454, 1152
FbaI TGATCA 2 cut(s) 1798, 1945
FblI GTMKAC 3 cut(s) 130, 163, 512
Fnu4HI GCNGC 4 cut(s) 158, 1164, 2710, 2952
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 4 cut(s) 158, 1164, 2710, 2952
FspBI CTAG 8 cut(s) 612, 1044, 1077, 1101, 1110, 1764, 1833, 2553
GlaI GCGC 1 cut(s) 848
GluI GCNGC 4 cut(s) 158, 1164, 2710, 2952
GsaI CCCAGC 1 cut(s) 2103
GsuI CTGGAG 2 cut(s) 2425, 2944
HaeIII GGCC 3 cut(s) 1063, 1301, 2504
HapII CCGG 3 cut(s) 134, 466, 2874
HgaI GACGC 1 cut(s) 1337
HhaI GCGC 1 cut(s) 849
Hin1I GRCGYC 1 cut(s) 748
Hin6I GCGC 1 cut(s) 847
HinP1I GCGC 1 cut(s) 847
HincII GTYRAC 2 cut(s) 1785, 2341
HindII GTYRAC 2 cut(s) 1785, 2341
HindIII AAGCTT 1 cut(s) 1722
HpaII CCGG 3 cut(s) 134, 466, 2874
HphI GGTGA 4 cut(s) 152, 861, 995, 2573
Hpy166II GTNNAC 9 cut(s) 53, 131, 164, 281, 513, 679, 1785, 2341, 2471
Hpy8I GTNNAC 9 cut(s) 53, 131, 164, 281, 513, 679, 1785, 2341, 2471
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 7 cut(s) 514, 672, 861, 882, 1232, 1582, 2252
HpyCH4IV ACGT 5 cut(s) 681, 748, 1093, 1438, 1565
HpyF10VI GCNNNNNNNGC 6 cut(s) 237, 377, 844, 1394, 1643, 2211
HpySE526I ACGT 5 cut(s) 681, 748, 1093, 1438, 1565
Hsp92I GRCGYC 1 cut(s) 748
HspAI GCGC 1 cut(s) 847
Kpn2I TCCGGA 1 cut(s) 465
KpnI GGTACC 1 cut(s) 2436
Ksp22I TGATCA 2 cut(s) 1798, 1945
LmnI GCTCC 5 cut(s) 261, 1242, 1955, 2406, 2861
Lsp1109I GCAGC 3 cut(s) 144, 1175, 2721
LweI GCATC 7 cut(s) 114, 634, 1520, 1522, 1582, 1624, 2645
MaeI CTAG 8 cut(s) 612, 1044, 1077, 1101, 1110, 1764, 1833, 2553
MaeII ACGT 5 cut(s) 681, 748, 1093, 1438, 1565
MaeIII GTNAC 8 cut(s) 140, 386, 598, 867, 1413, 1566, 2039, 2579
MbiI CCGCTC 1 cut(s) 264
MfeI CAATTG 3 cut(s) 178, 1196, 1949
MflI RGATCY 4 cut(s) 1829, 2356, 2665, 2819
MhlI GDGCHC 3 cut(s) 55, 194, 690
MlyI GAGTC 6 cut(s) 294, 1304, 1697, 1784, 1930, 2609
MmeI TCCRAC 3 cut(s) 151, 1114, 1466
Mph1103I ATGCAT 1 cut(s) 85
MroI TCCGGA 1 cut(s) 465
MslI CAYNNNNRTG 3 cut(s) 96, 2733, 2975
MspA1I CMGCKG 1 cut(s) 2376
MspI CCGG 3 cut(s) 134, 466, 2874
MspR9I CCNGG 3 cut(s) 135, 1037, 2563
MunI CAATTG 3 cut(s) 178, 1196, 1949
Mva1269I GAATGC 2 cut(s) 13, 296
MvaI CCWGG 2 cut(s) 1037, 2563
MwoI GCNNNNNNNGC 6 cut(s) 237, 377, 844, 1394, 1643, 2211
NciI CCSGG 1 cut(s) 135
NdeI CATATG 2 cut(s) 454, 1152
NlaIV GGNNCC 3 cut(s) 1009, 2434, 2857
NmuCI GTSAC 5 cut(s) 140, 386, 867, 1566, 2579
NsiI ATGCAT 1 cut(s) 85
NspI RCATGY 4 cut(s) 83, 109, 1716, 2784
PaeI GCATGC 2 cut(s) 83, 2784
PagI TCATGA 1 cut(s) 553
PciI ACATGT 1 cut(s) 105
PctI GAATGC 2 cut(s) 13, 296
PfeI GAWTC 7 cut(s) 38, 572, 626, 1837, 1913, 2150, 2192
PkrI GCNGC 4 cut(s) 159, 1165, 2711, 2953
Ple19I CGATCG 1 cut(s) 2178
PleI GAGTC 6 cut(s) 293, 1304, 1696, 1783, 1930, 2609
PpsI GAGTC 6 cut(s) 293, 1304, 1696, 1783, 1930, 2609
PscI ACATGT 1 cut(s) 105
PshBI ATTAAT 2 cut(s) 2412, 2895
Psp124BI GAGCTC 1 cut(s) 194
Psp1406I AACGTT 1 cut(s) 681
Psp6I CCWGG 2 cut(s) 1035, 2561
PspEI GGTNACC 1 cut(s) 2579
PspFI CCCAGC 1 cut(s) 2099
PspGI CCWGG 2 cut(s) 1035, 2561
PspN4I GGNNCC 3 cut(s) 1009, 2434, 2857
PspPI GGNCC 3 cut(s) 545, 1300, 2690
PstNI CAGNNNCTG 1 cut(s) 1637
PsuI RGATCY 4 cut(s) 1829, 2356, 2665, 2819
PvuI CGATCG 1 cut(s) 2178
RsaI GTAC 9 cut(s) 347, 592, 1249, 1682, 1861, 1991, 2016, 2434, 2472
RsaNI GTAC 9 cut(s) 346, 591, 1248, 1681, 1860, 1990, 2015, 2433, 2471
RseI CAYNNNNRTG 3 cut(s) 96, 2733, 2975
SacI GAGCTC 1 cut(s) 194
SatI GCNGC 4 cut(s) 158, 1164, 2710, 2952
Sau96I GGNCC 3 cut(s) 545, 1300, 2690
ScaI AGTACT 1 cut(s) 2016
SchI GAGTC 6 cut(s) 294, 1304, 1697, 1784, 1930, 2609
ScrFI CCNGG 3 cut(s) 135, 1037, 2563
SduI GDGCHC 3 cut(s) 55, 194, 690
SfaNI GCATC 7 cut(s) 114, 634, 1520, 1522, 1582, 1624, 2645
SfcI CTRYAG 2 cut(s) 426, 1267
SinI GGWCC 2 cut(s) 545, 2690
SmiMI CAYNNNNRTG 3 cut(s) 96, 2733, 2975
SmlI CTYRAG 4 cut(s) 193, 822, 1805, 2349
SmoI CTYRAG 4 cut(s) 193, 822, 1805, 2349
SpeI ACTAGT 1 cut(s) 1076
SphI GCATGC 2 cut(s) 83, 2784
SsiI CCGC 9 cut(s) 252, 264, 410, 561, 2376, 2516, 2784, 2952, 2964
SspI AATATT 1 cut(s) 1795
SspMI CTAG 8 cut(s) 612, 1044, 1077, 1101, 1110, 1764, 1833, 2553
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 3 cut(s) 133, 1035, 2561
StyI CCWWGG 1 cut(s) 702
TaiI ACGT 5 cut(s) 684, 751, 1096, 1441, 1568
TaqI TCGA 5 cut(s) 41, 111, 2174, 2178, 2305
TatI WGTACW 5 cut(s) 590, 1247, 1859, 2014, 2470
TauI GCSGC 1 cut(s) 2954
TfiI GAWTC 7 cut(s) 38, 572, 626, 1837, 1913, 2150, 2192
TscAI CASTG 9 cut(s) 18, 1018, 1195, 1575, 2293, 2647, 2686, 2692, 2728
TseFI GTSAC 5 cut(s) 140, 386, 867, 1566, 2579
TseI GCWGC 3 cut(s) 157, 1163, 2709
Tsp45I GTSAC 5 cut(s) 140, 386, 867, 1566, 2579
TspDTI ATGAA 9 cut(s) 441, 729, 1251, 1409, 2153, 2205, 2271, 2334, 2832
TspGWI ACGGA 2 cut(s) 59, 2749
TspRI CASTG 9 cut(s) 18, 1018, 1195, 1575, 2293, 2647, 2686, 2692, 2728
VneI GTGCAC 1 cut(s) 51
VpaK11BI GGWCC 2 cut(s) 545, 2690
VspI ATTAAT 2 cut(s) 2412, 2895
XapI RAATTY 8 cut(s) 497, 992, 1356, 1369, 1455, 2047, 2606, 2849
XceI RCATGY 4 cut(s) 83, 109, 1716, 2784
XcmI CCANNNNNNNNNTGG 1 cut(s) 2497
XmiI GTMKAC 3 cut(s) 130, 163, 512
XspI CTAG 8 cut(s) 612, 1044, 1077, 1101, 1110, 1764, 1833, 2553
ZraI GACGTC 1 cut(s) 749
ZrmI AGTACT 1 cut(s) 2016
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.