AT1G01060
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
33365 .. 37871
4507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01060.8

Sequence Viewer

Length: 1938 bp
ATGGATACTAATACATCTGGAGAAGAATTATTAGCTAAGGCAAGAAAGCCATATACAATAACAAAGCAGCGAGAGCGATGGACTGAGGATGAGCATGAGAGGTTTCTAGAAGCCTTGAGGCTTTATGGAAGAGCTTGGCAACGAATTGAAGAACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCACAAAAGTTCTTCACAAAGTTGGAGAAAGAGGCTGAAGTTAAAGGCATCCCTGTTTGCCAAGCTTTGGACATAGAAATTCCGCCTCCTCGTCCTAAACGAAAACCCAATACTCCTTATCCTCGAAAGCCTGGGAACAACGGTACATCTTCCTCTCAAGTATCATCAGCAAAAGATGCAAAACTTGTTTCATCGGCCTCTTCTTCACAGTTGAATCAGGCGTTCTTGGATTTGGAAAAAATGCCGTTCTCTGAGAAAACATCAACTGGAAAAGAAAATCAAGATGAGAATTGCTCGGGTGTTTCTACTGTGAACAAGTATCCCTTACCAACGAAACAGGTAAGTGGCGACATTGAAACAAGTAAGACCTCAACTGTGGACAACGCGGTTCAAGATGTTCCCAAGAAGAACAAAGACAAAGATGGTAACGATGGTACTACTGTGCACAGCATGCAAAACTACCCTTGGCATTTCCACGCAGATATTGTGAACGGGAATATAGCAAAATGCCCTCAAAATCATCCCTCAGGTATGGTATCTCAAGACTTCATGTTTCATCCTATGAGAGAAGAAACTCACGGGCACGCAAATCTTCAAGCTACAACAGCATCTGCTACTACTACAGCTTCTCATCAAGCGTTTCCAGCTTGTCATTCACAGGATGATTACCGTTCGTTTCTCCAGATATCATCTACTTTCTCCAATCTTATTATGTCAACTCTCCTACAGAATCCTGCAGCTCATGCTGCAGCTACATTCGCTGCTTCGGTCTGGCCTTATGCGAGTGTCGGGAATTCTGGTGATTCATCAACCCCAATGAGCTCTTCTCCTCCAAGTATAACTGCCATTGCCGCTGCTACAGTAGCTGCTGCAACTGCTTGGTGGGCTTCTCATGGACTTCTTCCTGTATGCGCTCCAGCTCCAATAACATGTGTTCCATTCTCAACTGTTGCAGTTCCAACTCCAGCAATGACTGAAATGGATACCGTTGAAAATACTCAACCGTTTGAGAAACAAAACACAGCTCTGCAAGATCAAAACTTGGCTTCGAAATCTCCAGCTTCATCATCTGATGATTCAGATGAGACTGGAGTAACCAAGCTAAATGCCGACTCAAAAACCAATGATGATAAAATTGAGGAGGTTGTTGTTACTGCCGCTGTGCATGACTCAAACACTGCCCAGAAGAAAAATCTTGTGGACCGCTCATCCTGTGGCTCAAATACACCTTCAGGGAGTGACGCAGAAACTGATGCATTAGATAAAATGGAGAAAGATAAAGAGGATGTGAAGGAGACAGATGAGAATCAGCCAGATGTTATTGAGTTAAATAACCGTAAGATTAAAATGAGAGACAACAACAGCAACAACAATGCAACTACTGATTCGTGGAAGGAAGTCTCCGAAGAGGGTCGTATAGCGTTTCAGGCTCTCTTTGCAAGAGAAAGATTGCCTCAAAGCTTTTCGCCTCCTCAAGTGGCAGAGAATGTGAATAGAAAACAAAGTGACACGTCAATGCCATTGGCTCCTAATTTCAAAAGCCAGGATTCTTGTGCTGCAGACCAAGAAGGAGTAGTAATGATCGGTGTTGGAACATGCAAGAGTCTTAAAACGAGACAGACAGGATTTAAGCCATACAAGAGATGTTCAATGGAAGTGAAAGAGAGCCAAGTTGGGAACATAAACAATCAAAGTGATGAAAAAGTCTGCAAAAGGCTTCGATTGGAAGGAGAAGCTTCTACATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

645

Amino Acids

70.44

Weight (kDa)

5.77

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 24 - 67 2.6e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 1398
AccII CGCG 1 cut(s) 578
AciI CCGC 5 cut(s) 275, 578, 1044, 1350, 1396
AcsI RAATTY 2 cut(s) 270, 985
AcuI CTGAAG 2 cut(s) 249, 1407
AfaI GTAC 2 cut(s) 337, 628
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 2 cut(s) 1121, 1701
AgsI TTSAA 8 cut(s) 149, 406, 548, 584, 788, 1184, 1729, 1842
AjiI CACGTC 1 cut(s) 1704
AjnI CCWGG 2 cut(s) 322, 1734
AjuI GAANNNNNNNTTGG 4 cut(s) 141, 173, 1000, 1032
Alw21I GWGCWC 2 cut(s) 639, 1016
Alw26I GTCTC 5 cut(s) 1271, 1481, 1539, 1597, 1801
Alw44I GTGCAC 1 cut(s) 635
AlwNI CAGNNNCTG 3 cut(s) 803, 1058, 1442
Ama87I CYCGRG 1 cut(s) 487
AoxI GGCC 2 cut(s) 387, 965
ApaLI GTGCAC 1 cut(s) 635
ApeKI GCWGC 9 cut(s) 67, 929, 938, 941, 953, 1046, 1058, 1061, 1748
ApoI RAATTY 2 cut(s) 270, 985
AspLEI GCGC 1 cut(s) 1106
AspS9I GGNCC 1 cut(s) 1393
AsuHPI GGTGA 1 cut(s) 1004
AsuII TTCGAA 1 cut(s) 1241
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 1 cut(s) 1393
AxyI CCTNAGG 1 cut(s) 718
BaeGI GKGCMC 2 cut(s) 639, 777
BaeI ACNNNNGTAYC 2 cut(s) 618, 651
BanII GRGCYC 1 cut(s) 1016
Bbv12I GWGCWC 2 cut(s) 639, 1016
BbvI GCAGC 9 cut(s) 79, 925, 940, 941, 953, 1033, 1045, 1048, 1735
BccI CCATC 3 cut(s) 72, 608, 617
BceAI ACGGC 1 cut(s) 421
BciT130I CCWGG 2 cut(s) 324, 1736
BciVI GTATCC 2 cut(s) 522, 1168
BcoDI GTCTC 5 cut(s) 1271, 1481, 1539, 1597, 1801
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 6 cut(s) 813, 917, 927, 939, 1050, 1749
BfuI GTATCC 2 cut(s) 522, 1168
Bme1390I CCNGG 2 cut(s) 324, 1736
Bme18I GGWCC 1 cut(s) 1393
BmeT110I CYCGRG 1 cut(s) 487
BmgBI CACGTC 1 cut(s) 1704
BmgT120I GGNCC 1 cut(s) 1393
BmiI GGNNCC 1 cut(s) 1719
BmrFI CCNGG 2 cut(s) 324, 1736
BmsI GCATC 4 cut(s) 249, 358, 809, 1435
BplI GAGNNNNNCTC 4 cut(s) 470, 502, 1003, 1035
BpmI CTGGAG 6 cut(s) 39, 857, 1092, 1140, 1233, 1302
Bpu10I CCTNAGC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 1241
BpuEI CTTGAG 4 cut(s) 136, 333, 717, 1650
BsaBI GATNNNNATC 1 cut(s) 1497
BsaJI CCNNGG 2 cut(s) 323, 656
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 463, 1285
Bse21I CCTNAGG 1 cut(s) 718
Bse3DI GCAATG 2 cut(s) 1038, 1167
Bse8I GATNNNNATC 1 cut(s) 1497
BseBI CCWGG 2 cut(s) 324, 1736
BseDI CCNNGG 2 cut(s) 323, 656
BseGI GGATG 7 cut(s) 94, 240, 712, 748, 859, 1400, 1483
BseJI GATNNNNATC 1 cut(s) 1497
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 2 cut(s) 1038, 1167
BseMII CTCAG 3 cut(s) 75, 435, 732
BseNI ACTGG 2 cut(s) 463, 1285
BseRI GAGGAG 4 cut(s) 270, 1011, 1346, 1653
BseSI GKGCMC 2 cut(s) 639, 777
BseXI GCAGC 9 cut(s) 79, 925, 940, 941, 953, 1033, 1045, 1048, 1735
Bsh1236I CGCG 1 cut(s) 578
BshFI GGCC 2 cut(s) 389, 967
BsiHKAI GWGCWC 2 cut(s) 639, 1016
BsiHKCI CYCGRG 1 cut(s) 487
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 5 cut(s) 1271, 1481, 1539, 1597, 1801
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 2 cut(s) 389, 967
BsoBI CYCGRG 1 cut(s) 487
Bsp119I TTCGAA 1 cut(s) 1241
Bsp1286I GDGCHC 3 cut(s) 639, 777, 1016
Bsp143I GATC 3 cut(s) 180, 1225, 1773
BspACI CCGC 5 cut(s) 275, 578, 1044, 1350, 1396
BspANI GGCC 2 cut(s) 389, 967
BspCNI CTCAG 3 cut(s) 76, 436, 731
BspFNI CGCG 1 cut(s) 578
BspLI GGNNCC 1 cut(s) 1719
BspMAI CTGCAG 3 cut(s) 931, 943, 1753
BspQI GCTCTTC 2 cut(s) 124, 1021
BspT104I TTCGAA 1 cut(s) 1241
BsrBI CCGCTC 1 cut(s) 1398
BsrDI GCAATG 2 cut(s) 1038, 1167
BsrI ACTGG 2 cut(s) 463, 1285
BssECI CCNNGG 2 cut(s) 323, 656
BssMI GATC 3 cut(s) 180, 1225, 1773
BssT1I CCWWGG 1 cut(s) 656
Bst2UI CCWGG 2 cut(s) 324, 1736
Bst6I CTCTTC 4 cut(s) 124, 397, 1021, 1593
BstAPI GCANNNNNTGC 3 cut(s) 368, 643, 935
BstBI TTCGAA 1 cut(s) 1241
BstC8I GCNNGC 2 cut(s) 644, 777
BstDEI CTNAG 4 cut(s) 36, 84, 444, 718
BstF5I GGATG 7 cut(s) 94, 240, 712, 748, 859, 1400, 1483
BstFNI CGCG 1 cut(s) 578
BstHHI GCGC 1 cut(s) 1106
BstKTI GATC 3 cut(s) 183, 1228, 1776
BstMAI GTCTC 5 cut(s) 1271, 1481, 1539, 1597, 1801
BstMBI GATC 3 cut(s) 180, 1225, 1773
BstNI CCWGG 2 cut(s) 324, 1736
BstNSI RCATGY 3 cut(s) 646, 1125, 1791
BstSCI CCNGG 2 cut(s) 322, 1734
BstSFI CTRYAG 6 cut(s) 813, 917, 927, 939, 1050, 1749
BstSLI GKGCMC 2 cut(s) 639, 777
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 9 cut(s) 79, 925, 940, 941, 953, 1033, 1045, 1048, 1735
Bsu36I CCTNAGG 1 cut(s) 718
BsuI GTATCC 2 cut(s) 522, 1168
BsuRI GGCC 2 cut(s) 389, 967
BtgZI GCGATG 1 cut(s) 91
BtrI CACGTC 1 cut(s) 1704
BtsCI GGATG 7 cut(s) 94, 240, 712, 748, 859, 1400, 1483
BtsI GCAGTG 1 cut(s) 1368
BtsIMutI CAGTG 1 cut(s) 1368
Cac8I GCNNGC 2 cut(s) 644, 777
CaiI CAGNNNCTG 3 cut(s) 803, 1058, 1442
CfoI GCGC 1 cut(s) 1106
Cfr13I GGNCC 1 cut(s) 1393
CseI GACGC 1 cut(s) 1442
Csp6I GTAC 2 cut(s) 336, 627
CviQI GTAC 2 cut(s) 336, 627
DdeI CTNAG 4 cut(s) 36, 84, 444, 718
DpnI GATC 3 cut(s) 182, 1227, 1775
DpnII GATC 3 cut(s) 180, 1225, 1773
Eam1104I CTCTTC 4 cut(s) 124, 397, 1021, 1593
EarI CTCTTC 4 cut(s) 124, 397, 1021, 1593
EciI GGCGGA 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 1014
Eco130I CCWWGG 1 cut(s) 656
Eco24I GRGCYC 1 cut(s) 1016
Eco32I GATATC 1 cut(s) 879
Eco47I GGWCC 1 cut(s) 1393
Eco53kI GAGCTC 1 cut(s) 1014
Eco57I CTGAAG 2 cut(s) 249, 1407
Eco81I CCTNAGG 1 cut(s) 718
Eco88I CYCGRG 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 1014
EcoRI GAATTC 1 cut(s) 985
EcoRII CCWGG 2 cut(s) 322, 1734
EcoRV GATATC 1 cut(s) 879
EcoT14I CCWWGG 1 cut(s) 656
EcoT22I ATGCAT 1 cut(s) 1450
EcoT38I GRGCYC 1 cut(s) 1016
ErhI CCWWGG 1 cut(s) 656
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 1 cut(s) 175
FokI GGATG 7 cut(s) 101, 227, 699, 735, 866, 1387, 1490
FriOI GRGCYC 1 cut(s) 1016
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 1105
GsuI CTGGAG 6 cut(s) 39, 857, 1092, 1140, 1233, 1302
HaeIII GGCC 2 cut(s) 389, 967
HgaI GACGC 1 cut(s) 1442
HhaI GCGC 1 cut(s) 1106
Hin6I GCGC 1 cut(s) 1104
HinP1I GCGC 1 cut(s) 1104
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HindIII AAGCTT 3 cut(s) 255, 1651, 1926
HphI GGTGA 1 cut(s) 1004
Hpy166II GTNNAC 6 cut(s) 505, 571, 637, 682, 909, 1393
Hpy188I TCNGA 6 cut(s) 180, 185, 445, 1264, 1273, 1597
Hpy188III TCNNGA 7 cut(s) 18, 107, 473, 584, 734, 874, 982
Hpy8I GTNNAC 6 cut(s) 505, 571, 637, 682, 909, 1393
HpyAV CCTTC 5 cut(s) 1431, 1477, 1579, 1754, 1913
HpyCH4IV ACGT 1 cut(s) 1703
HpyF3I CTNAG 4 cut(s) 36, 84, 444, 718
HpySE526I ACGT 1 cut(s) 1703
HspAI GCGC 1 cut(s) 1104
Kzo9I GATC 3 cut(s) 180, 1225, 1773
LguI GCTCTTC 2 cut(s) 124, 1021
LmnI GCTCC 3 cut(s) 1111, 1117, 1723
Lsp1109I GCAGC 9 cut(s) 79, 925, 940, 941, 953, 1033, 1045, 1048, 1735
LweI GCATC 4 cut(s) 249, 358, 809, 1435
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 1703
MaeIII GTNAC 5 cut(s) 617, 1285, 1342, 1430, 1697
MalI GATC 3 cut(s) 182, 1227, 1775
MbiI CCGCTC 1 cut(s) 1398
MboI GATC 3 cut(s) 180, 1225, 1773
MhlI GDGCHC 3 cut(s) 639, 777, 1016
MluCI AATT 7 cut(s) 26, 144, 270, 481, 985, 1326, 1723
MlyI GAGTC 3 cut(s) 1298, 1355, 1804
MmeI TCCRAC 3 cut(s) 195, 1175, 1762
Mph1103I ATGCAT 1 cut(s) 1450
MseI TTAA 5 cut(s) 234, 1520, 1536, 1800, 1821
MslI CAYNNNNRTG 1 cut(s) 1706
MspA1I CMGCKG 2 cut(s) 1046, 1352
MspR9I CCNGG 2 cut(s) 324, 1736
MvaI CCWGG 2 cut(s) 324, 1736
MvnI CGCG 1 cut(s) 578
NdeII GATC 3 cut(s) 180, 1225, 1773
NlaIV GGNNCC 1 cut(s) 1719
NmuCI GTSAC 2 cut(s) 1430, 1697
NsiI ATGCAT 1 cut(s) 1450
NspI RCATGY 3 cut(s) 646, 1125, 1791
NspV TTCGAA 1 cut(s) 1241
PaeI GCATGC 1 cut(s) 646
PciI ACATGT 1 cut(s) 1121
PciSI GCTCTTC 2 cut(s) 124, 1021
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PfeI GAWTC 7 cut(s) 406, 922, 995, 1268, 1498, 1577, 1739
PflMI CCANNNNNTGG 1 cut(s) 259
PleI GAGTC 3 cut(s) 1298, 1355, 1803
PpsI GAGTC 3 cut(s) 1298, 1355, 1803
PscI ACATGT 1 cut(s) 1121
Psp124BI GAGCTC 1 cut(s) 1016
Psp6I CCWGG 2 cut(s) 322, 1734
PspGI CCWGG 2 cut(s) 322, 1734
PspN4I GGNNCC 1 cut(s) 1719
PspPI GGNCC 1 cut(s) 1393
PstI CTGCAG 3 cut(s) 931, 943, 1753
PstNI CAGNNNCTG 3 cut(s) 803, 1058, 1442
RsaI GTAC 2 cut(s) 337, 628
RsaNI GTAC 2 cut(s) 336, 627
RseI CAYNNNNRTG 1 cut(s) 1706
SacI GAGCTC 1 cut(s) 1016
SapI GCTCTTC 2 cut(s) 124, 1021
SaqAI TTAA 5 cut(s) 234, 1520, 1536, 1800, 1821
Sau3AI GATC 3 cut(s) 180, 1225, 1773
Sau96I GGNCC 1 cut(s) 1393
SchI GAGTC 3 cut(s) 1298, 1355, 1804
ScrFI CCNGG 2 cut(s) 324, 1736
SduI GDGCHC 3 cut(s) 639, 777, 1016
SfaNI GCATC 4 cut(s) 249, 358, 809, 1435
SfcI CTRYAG 6 cut(s) 813, 917, 927, 939, 1050, 1749
SfuI TTCGAA 1 cut(s) 1241
SinI GGWCC 1 cut(s) 1393
SmiMI CAYNNNNRTG 1 cut(s) 1706
SmlI CTYRAG 4 cut(s) 115, 348, 732, 1665
SmoI CTYRAG 4 cut(s) 115, 348, 732, 1665
SphI GCATGC 1 cut(s) 646
Sse9I AATT 7 cut(s) 26, 144, 270, 481, 985, 1326, 1723
SsiI CCGC 5 cut(s) 275, 578, 1044, 1350, 1396
SspMI CTAG 1 cut(s) 107
SstI GAGCTC 1 cut(s) 1016
StyD4I CCNGG 2 cut(s) 322, 1734
StyI CCWWGG 1 cut(s) 656
TaiI ACGT 1 cut(s) 1706
TaqI TCGA 3 cut(s) 316, 1241, 1912
TaqII GACCGA 1 cut(s) 949
TasI AATT 7 cut(s) 26, 144, 270, 481, 985, 1326, 1723
TauI GCSGC 2 cut(s) 1046, 1352
TfiI GAWTC 7 cut(s) 406, 922, 995, 1268, 1498, 1577, 1739
Tru1I TTAA 5 cut(s) 234, 1520, 1536, 1800, 1821
Tru9I TTAA 5 cut(s) 234, 1520, 1536, 1800, 1821
TscAI CASTG 1 cut(s) 1375
TseFI GTSAC 2 cut(s) 1430, 1697
TseI GCWGC 9 cut(s) 67, 929, 938, 941, 953, 1046, 1058, 1061, 1748
Tsp45I GTSAC 2 cut(s) 1430, 1697
TspDTI ATGAA 6 cut(s) 372, 730, 737, 987, 1245, 1905
TspRI CASTG 1 cut(s) 1375
Van91I CCANNNNNTGG 1 cut(s) 259
VneI GTGCAC 1 cut(s) 635
VpaK11BI GGWCC 1 cut(s) 1393
XapI RAATTY 2 cut(s) 270, 985
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 3 cut(s) 646, 1125, 1791
XspI CTAG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.