FvH4_7g17850
MYB Family

Protein LHY-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001426
Physical Location & Seq
Forward (+)
15035045 .. 15044404
9360 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17850.t6

Sequence Viewer

Length: 1527 bp
ATGTTTAACTTCCAGCTGGAGAAGGAGGCAGTCAGTAAAGGTGTTCCGGTAGGACAATCAATTGACATAGATATTCCGCCTCCACGCCCTAAAAGGAAACCAAGCAATCCTTATCCTCGGAAGTCTAGTGAAGCTGCTCCCACATGGTCCACATCGCATGTTGGAGCAAAGGATGGAAACCTTGTGTCATCAGCTTCTTCTTCACATTGTAAACAAGCAGTGGACTTGGAGAAAGGACAACTTGATGAGAGATCCAGTGGAGGAGAAAAGCCAAGTTATGGAAAAGAAAACAAAGATAAAAATTGTTCAGAAGTCTTCACCATACTCTCAGAATCGCACTGCTCCTCTGTGTCTTCTGAAATCAAAAGTTCCATACACACACAGGTGGCACTCAGAACTGCTTGCACTTTTAGAGAGTTTGTGCCTCCAGTGAAAAAGGTAATCCCTCGAGATGGCAATGAATCTTATGTCACTATTGAACTTAAAGGAAATGAGATTTTGAAGAAAACTGATACCAAAAAGATAGTTCAAGATAATGCCACAAGTGAAGCCTCAAAGTTGGAGAACACTAATGCTTTAAAGTTGGTTCAAGGTGAGAAAGCAGATGATTTGAATTGTTCATTGCCAACAGATGGGATGCAAAGTACTCTGACCTGCCCGAGGAATGTTCCTATACAGATACTGGATGGGAGCGGTGGAGAATGTAATCGAACTACAACCCCAGCTTTGTCGTTATCATTCCAGGACTCTGTGTTTCATCCTATGGGAAAGATTCATGTACAGCCTAACCTGTTTACAAATCCAGCTGCATCTACTACTACTACTACTACTACTACTGAACATGATAGTAATGTATCAAGATCTTGTATTGACCAATCAATTCCAGCTATTCCGCCTCCATTCACCCCATTCCACCACAATCAAGAGGACTACCACTCATCCCTTTCCTCCACATTTTCAAGTCTTATTGTCTCTTCTCTGCTACAGAACCCTGCAGCCCATGCTGCGGCTAGTTTTGCAGCCACCTTCTGGCCTTACACCAATTTAGAGAACAAGGAAGGTTCTCCTGCATGCTCAGCCGGAAGTTTTCCATCTAGCCTAATGAACTCCCCTCCAAATATGGCAGCCATTGCTGCGGCCACTGTAGCTGCAGCAACTGCCTGGTGGGCTGCCCATGGAATGCTTCCCTTGTGCGCTCCTCTTCAAACTAGCTTTAGCTGTCCTGTGCCCATGACTGGAGTTGCATCAATGGACAATGATCAAGCTCATGCAGCCGAGGCAGAGAAAGGACAGGGTACTATTCAAGGTCCTTCATTGCAGGATCAACAGCAGGAGCCAGAACACTCAGAAGCTGTGCAAGCACAACATTCACCTTCAAAATCACCAACCATATCCTCATCAGATTCTGAAAATGGAGGCGCAAAGCCTGAAATTGGATCAAAAGCTGATGACAATGAGAAGGACATAGCATCAACTGAAGTTCAAGACTTGAACAAAGCAAAGAGCAAAAAACAGGTTTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0042754 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043393 GO:0043433 GO:0043496 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051098 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

509

Amino Acids

54.18

Weight (kDa)

5.7

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 24 - 67 1.8e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 662
AccB7I CCANNNNNTGG 3 cut(s) 278, 632, 1029
AccBSI CCGCTC 1 cut(s) 693
AciI CCGC 5 cut(s) 77, 693, 893, 1007, 1136
AclWI GGATC 3 cut(s) 246, 1329, 1444
AcoI YGGCCR 1 cut(s) 1137
AcuI CTGAAG 1 cut(s) 1497
AfaI GTAC 3 cut(s) 646, 780, 1297
AfiI CCNNNNNNNGG 8 cut(s) 278, 452, 632, 660, 1006, 1029, 1235, 1433
AjnI CCWGG 2 cut(s) 741, 1160
AleI CACNNNNGTG 1 cut(s) 383
Alw26I GTCTC 1 cut(s) 976
AlwI GGATC 3 cut(s) 246, 1329, 1444
AlwNI CAGNNNCTG 4 cut(s) 682, 1157, 1352, 1406
Ama87I CYCGRG 2 cut(s) 447, 658
AoxI GGCC 2 cut(s) 1031, 1137
AspLEI GCGC 2 cut(s) 1196, 1421
AspS9I GGNCC 2 cut(s) 147, 1307
AsuHPI GGTGA 5 cut(s) 310, 605, 895, 1362, 1374
AvaI CYCGRG 2 cut(s) 447, 658
AvaII GGWCC 2 cut(s) 147, 1307
BaeGI GKGCMC 1 cut(s) 1230
BbsI GAAGAC 2 cut(s) 307, 345
BccI CCATC 5 cut(s) 167, 446, 626, 680, 1099
BciT130I CCWGG 2 cut(s) 743, 1162
BclI TGATCA 1 cut(s) 1258
BcoDI GTCTC 1 cut(s) 976
BfaI CTAG 4 cut(s) 126, 1011, 1095, 1209
BfmI CTRYAG 4 cut(s) 983, 993, 1143, 1149
BfuAI ACCTGC 1 cut(s) 662
BglI GCCNNNNNGGC 1 cut(s) 1166
BglII AGATCT 1 cut(s) 860
BlpI GCTNAGC 1 cut(s) 1075
BmcAI AGTACT 1 cut(s) 646
Bme1390I CCNGG 2 cut(s) 743, 1162
Bme18I GGWCC 2 cut(s) 147, 1307
BmeT110I CYCGRG 2 cut(s) 447, 658
BmgT120I GGNCC 2 cut(s) 147, 1307
BmiI GGNNCC 1 cut(s) 1335
BmrFI CCNGG 2 cut(s) 743, 1162
BmsI GCATC 4 cut(s) 627, 818, 1253, 1478
BpiI GAAGAC 2 cut(s) 307, 345
BpmI CTGGAG 3 cut(s) 38, 411, 1257
Bpu1102I GCTNAGC 1 cut(s) 1075
BsaJI CCNNGG 4 cut(s) 116, 659, 1174, 1275
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 8 cut(s) 278, 452, 632, 660, 1006, 1029, 1235, 1433
Bse1I ACTGG 4 cut(s) 255, 428, 687, 1240
Bse3DI GCAATG 4 cut(s) 463, 620, 1128, 1313
BseBI CCWGG 2 cut(s) 743, 1162
BseDI CCNNGG 4 cut(s) 116, 659, 1174, 1275
BseGI GGATG 5 cut(s) 178, 642, 691, 757, 938
BseLI CCNNNNNNNGG 8 cut(s) 278, 452, 632, 660, 1006, 1029, 1235, 1433
BseMI GCAATG 4 cut(s) 463, 620, 1128, 1313
BseMII CTCAG 4 cut(s) 342, 406, 1089, 1359
BseNI ACTGG 4 cut(s) 255, 428, 687, 1240
BseRI GAGGAG 3 cut(s) 276, 334, 1188
BseSI GKGCMC 1 cut(s) 1230
BseYI CCCAGC 1 cut(s) 721
BshFI GGCC 2 cut(s) 1033, 1139
BsiHKCI CYCGRG 2 cut(s) 447, 658
BsiSI CCGG 2 cut(s) 47, 1080
BslI CCNNNNNNNGG 8 cut(s) 278, 452, 632, 660, 1006, 1029, 1235, 1433
BsmAI GTCTC 1 cut(s) 976
BsmI GAATGC 1 cut(s) 1185
BsnI GGCC 2 cut(s) 1033, 1139
BsoBI CYCGRG 2 cut(s) 447, 658
Bsp1286I GDGCHC 1 cut(s) 1230
Bsp1407I TGTACA 1 cut(s) 778
Bsp143I GATC 5 cut(s) 251, 860, 1258, 1321, 1436
Bsp1720I GCTNAGC 1 cut(s) 1075
Bsp19I CCATGG 1 cut(s) 1174
BspACI CCGC 5 cut(s) 77, 693, 893, 1007, 1136
BspANI GGCC 2 cut(s) 1033, 1139
BspCNI CTCAG 4 cut(s) 341, 405, 1088, 1358
BspLI GGNNCC 1 cut(s) 1335
BspMAI CTGCAG 2 cut(s) 997, 1153
BspMI ACCTGC 1 cut(s) 662
BspPI GGATC 3 cut(s) 246, 1329, 1444
BsrBI CCGCTC 1 cut(s) 693
BsrDI GCAATG 4 cut(s) 463, 620, 1128, 1313
BsrGI TGTACA 1 cut(s) 778
BsrI ACTGG 4 cut(s) 255, 428, 687, 1240
BssECI CCNNGG 4 cut(s) 116, 659, 1174, 1275
BssMI GATC 5 cut(s) 251, 860, 1258, 1321, 1436
BssT1I CCWWGG 1 cut(s) 1174
Bst2UI CCWGG 2 cut(s) 743, 1162
Bst4CI ACNGT 1 cut(s) 1144
Bst6I CTCTTC 2 cut(s) 979, 1206
BstAPI GCANNNNNTGC 3 cut(s) 1001, 1130, 1157
BstAUI TGTACA 1 cut(s) 778
BstC8I GCNNGC 3 cut(s) 403, 1072, 1359
BstDEI CTNAG 4 cut(s) 328, 392, 1075, 1345
BstDSI CCRYGG 1 cut(s) 1174
BstENI CCTNNNNNAGG 1 cut(s) 658
BstF5I GGATG 5 cut(s) 178, 642, 691, 757, 938
BstHHI GCGC 2 cut(s) 1196, 1421
BstKTI GATC 5 cut(s) 254, 863, 1261, 1324, 1439
BstMAI GTCTC 1 cut(s) 976
BstMBI GATC 5 cut(s) 251, 860, 1258, 1321, 1436
BstNI CCWGG 2 cut(s) 743, 1162
BstNSI RCATGY 2 cut(s) 161, 1074
BstSCI CCNGG 2 cut(s) 741, 1160
BstSFI CTRYAG 4 cut(s) 983, 993, 1143, 1149
BstSLI GKGCMC 1 cut(s) 1230
BstV2I GAAGAC 2 cut(s) 307, 345
BstX2I RGATCY 2 cut(s) 251, 860
BstYI RGATCY 2 cut(s) 251, 860
BsuRI GGCC 2 cut(s) 1033, 1139
BtgI CCRYGG 1 cut(s) 1174
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 5 cut(s) 178, 642, 691, 757, 938
BtsI GCAGTG 2 cut(s) 225, 337
BtsIMutI CAGTG 5 cut(s) 225, 262, 337, 435, 1140
BveI ACCTGC 1 cut(s) 662
Cac8I GCNNGC 3 cut(s) 403, 1072, 1359
CaiI CAGNNNCTG 4 cut(s) 682, 1157, 1352, 1406
CfoI GCGC 2 cut(s) 1196, 1421
Cfr13I GGNCC 2 cut(s) 147, 1307
Csp6I GTAC 3 cut(s) 645, 779, 1296
CviAII CATG 9 cut(s) 144, 158, 776, 842, 1001, 1071, 1175, 1231, 1268
CviQI GTAC 3 cut(s) 645, 779, 1296
DdeI CTNAG 4 cut(s) 328, 392, 1075, 1345
DpnI GATC 5 cut(s) 253, 862, 1260, 1323, 1438
DpnII GATC 5 cut(s) 251, 860, 1258, 1321, 1436
DraI TTTAAA 1 cut(s) 579
EaeI YGGCCR 1 cut(s) 1137
Eam1104I CTCTTC 2 cut(s) 979, 1206
EarI CTCTTC 2 cut(s) 979, 1206
EciI GGCGGA 2 cut(s) 66, 882
Eco130I CCWWGG 1 cut(s) 1174
Eco47I GGWCC 2 cut(s) 147, 1307
Eco57I CTGAAG 1 cut(s) 1497
Eco88I CYCGRG 2 cut(s) 447, 658
EcoNI CCTNNNNNAGG 1 cut(s) 658
EcoO109I RGGNCCY 1 cut(s) 1307
EcoRII CCWGG 2 cut(s) 741, 1160
EcoT14I CCWWGG 1 cut(s) 1174
ErhI CCWWGG 1 cut(s) 1174
FaeI CATG 9 cut(s) 147, 161, 779, 845, 1004, 1074, 1178, 1234, 1271
FalI AAGNNNNNCTT 4 cut(s) 94, 126, 225, 257
FatI CATG 9 cut(s) 143, 157, 775, 841, 1000, 1070, 1174, 1230, 1267
FbaI TGATCA 1 cut(s) 1258
FokI GGATG 5 cut(s) 185, 649, 698, 744, 925
FspBI CTAG 4 cut(s) 126, 1011, 1095, 1209
GlaI GCGC 2 cut(s) 1195, 1420
GsaI CCCAGC 1 cut(s) 725
GsuI CTGGAG 3 cut(s) 38, 411, 1257
HaeIII GGCC 2 cut(s) 1033, 1139
HapII CCGG 2 cut(s) 47, 1080
HhaI GCGC 2 cut(s) 1196, 1421
Hin1II CATG 9 cut(s) 147, 161, 779, 845, 1004, 1074, 1178, 1234, 1271
Hin6I GCGC 2 cut(s) 1194, 1419
HinP1I GCGC 2 cut(s) 1194, 1419
HinfI GANTC 5 cut(s) 332, 461, 746, 772, 1403
HpaII CCGG 2 cut(s) 47, 1080
HphI GGTGA 5 cut(s) 310, 605, 895, 1362, 1374
Hpy166II GTNNAC 4 cut(s) 150, 212, 223, 795
Hpy188I TCNGA 9 cut(s) 120, 310, 331, 358, 395, 651, 1348, 1402, 1408
Hpy188III TCNNGA 5 cut(s) 449, 530, 858, 923, 1484
Hpy8I GTNNAC 4 cut(s) 150, 212, 223, 795
HpyAV CCTTC 6 cut(s) 16, 1036, 1052, 1320, 1383, 1453
HpyCH4III ACNGT 1 cut(s) 1144
HpyF3I CTNAG 4 cut(s) 328, 392, 1075, 1345
Hsp92II CATG 9 cut(s) 147, 161, 779, 845, 1004, 1074, 1178, 1234, 1271
HspAI GCGC 2 cut(s) 1194, 1419
Ksp22I TGATCA 1 cut(s) 1258
Kzo9I GATC 5 cut(s) 251, 860, 1258, 1321, 1436
LmnI GCTCC 6 cut(s) 142, 164, 347, 690, 1201, 1333
LweI GCATC 4 cut(s) 627, 818, 1253, 1478
MaeI CTAG 4 cut(s) 126, 1011, 1095, 1209
MaeIII GTNAC 1 cut(s) 469
MalI GATC 5 cut(s) 253, 862, 1260, 1323, 1438
MbiI CCGCTC 1 cut(s) 693
MboI GATC 5 cut(s) 251, 860, 1258, 1321, 1436
MboII GAAGA 7 cut(s) 189, 192, 307, 345, 514, 966, 1193
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 2 cut(s) 251, 860
MhlI GDGCHC 1 cut(s) 1230
MluCI AATT 6 cut(s) 60, 301, 613, 879, 1042, 1431
MlyI GAGTC 1 cut(s) 740
MmeI TCCRAC 2 cut(s) 142, 540
MseI TTAA 4 cut(s) 6, 483, 578, 1525
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 16, 806
MspI CCGG 2 cut(s) 47, 1080
MspR9I CCNGG 2 cut(s) 743, 1162
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 1185
MvaI CCWGG 2 cut(s) 743, 1162
NcoI CCATGG 1 cut(s) 1174
NdeII GATC 5 cut(s) 251, 860, 1258, 1321, 1436
NlaIII CATG 9 cut(s) 147, 161, 779, 845, 1004, 1074, 1178, 1234, 1271
NlaIV GGNNCC 1 cut(s) 1335
NmeAIII GCCGAG 1 cut(s) 1300
NmuCI GTSAC 1 cut(s) 469
NspI RCATGY 2 cut(s) 161, 1074
OliI CACNNNNGTG 1 cut(s) 383
PaeI GCATGC 1 cut(s) 1074
PaeR7I CTCGAG 1 cut(s) 447
PctI GAATGC 1 cut(s) 1185
PfeI GAWTC 4 cut(s) 332, 461, 772, 1403
PflMI CCANNNNNTGG 3 cut(s) 278, 632, 1029
PfoI TCCNGGA 1 cut(s) 741
PleI GAGTC 1 cut(s) 740
PpsI GAGTC 1 cut(s) 740
PpuMI RGGWCCY 1 cut(s) 1307
Psp5II RGGWCCY 1 cut(s) 1307
Psp6I CCWGG 2 cut(s) 741, 1160
PspFI CCCAGC 1 cut(s) 721
PspGI CCWGG 2 cut(s) 741, 1160
PspN4I GGNNCC 1 cut(s) 1335
PspPI GGNCC 2 cut(s) 147, 1307
PspPPI RGGWCCY 1 cut(s) 1307
PstI CTGCAG 2 cut(s) 997, 1153
PstNI CAGNNNCTG 4 cut(s) 682, 1157, 1352, 1406
PsuI RGATCY 2 cut(s) 251, 860
PvuII CAGCTG 2 cut(s) 16, 806
RsaI GTAC 3 cut(s) 646, 780, 1297
RsaNI GTAC 3 cut(s) 645, 779, 1296
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 4 cut(s) 6, 483, 578, 1525
Sau3AI GATC 5 cut(s) 251, 860, 1258, 1321, 1436
Sau96I GGNCC 2 cut(s) 147, 1307
ScaI AGTACT 1 cut(s) 646
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 2 cut(s) 743, 1162
SduI GDGCHC 1 cut(s) 1230
SfaNI GCATC 4 cut(s) 627, 818, 1253, 1478
SfcI CTRYAG 4 cut(s) 983, 993, 1143, 1149
Sfr274I CTCGAG 1 cut(s) 447
SinI GGWCC 2 cut(s) 147, 1307
SlaI CTCGAG 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
SphI GCATGC 1 cut(s) 1074
Sse9I AATT 6 cut(s) 60, 301, 613, 879, 1042, 1431
SsiI CCGC 5 cut(s) 77, 693, 893, 1007, 1136
SspMI CTAG 4 cut(s) 126, 1011, 1095, 1209
StyD4I CCNGG 2 cut(s) 741, 1160
StyI CCWWGG 1 cut(s) 1174
TaaI ACNGT 1 cut(s) 1144
TaqI TCGA 2 cut(s) 448, 709
TasI AATT 6 cut(s) 60, 301, 613, 879, 1042, 1431
TatI WGTACW 2 cut(s) 644, 778
TauI GCSGC 2 cut(s) 1010, 1139
TfiI GAWTC 4 cut(s) 332, 461, 772, 1403
Tru1I TTAA 4 cut(s) 6, 483, 578, 1525
Tru9I TTAA 4 cut(s) 6, 483, 578, 1525
TscAI CASTG 5 cut(s) 225, 262, 344, 435, 1147
TseFI GTSAC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 6 cut(s) 474, 609, 746, 764, 1118, 1302
TspRI CASTG 5 cut(s) 225, 262, 344, 435, 1147
Van91I CCANNNNNTGG 3 cut(s) 278, 632, 1029
VpaK11BI GGWCC 2 cut(s) 147, 1307
XagI CCTNNNNNAGG 1 cut(s) 658
XceI RCATGY 2 cut(s) 161, 1074
XhoI CTCGAG 1 cut(s) 447
XspI CTAG 4 cut(s) 126, 1011, 1095, 1209
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.