Rh4BG414600
MYB Family

Protein LHY-like isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
56228184 .. 56230597
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG414600.1

Sequence Viewer

Length: 1899 bp
ATGATTGCCGCTGCGAATTGGTCCAAAACCGGCGGGAAGGTGAAGAACGTTTTCGACCCGGAGCTGGTGAAGAAGATTTACGAGACGGAGTTGTGTGTGAAGGAGGGGCAGAGGAAGACAGTGCAGTTGCAGAGAGTGATGATTTTGGAGTCTAGTGAAGCTGCTCCAACATGGTCCACGTCGCATGTCGGAGCAAAGGATGGAAAACTTGTGTCATCAGCTTCTTCTTCACATTGTAAACAAGCAGTGGACTTGGAGAAAGGACCACTCGATGAGAGATCCAGTGGAGAAGAAAAGCTAAGTTATGGAAAAGAAAACAAAGATGAAAGTTGCTCAGAAGTCTTCACCTTACTCTCAGAGTCTCACTGCTCCTCTGTGTCTTCTGCAAACAAAAGTTCCATACCTGCACAAGCGGTACTCAGAAATGCTTGCACTTTTAGAGAGTTTGTGCCTTCAGTGAAAAAGGTAATCCCTCGAGATGGCAATGAATCTTATGTCACTATTGAACTTAAAGGAAATGAGAATTTGAAGAAAACTGATGCCAAAAAGATAGTTCAAGATAATGCCACAAGTGAAGCCTCAAAGTTGGAGAACACTAATGCTTTTAAGTTGGTTCAAGGTGAGAAAGCAGATGATTTGAATTGTTCATTGCCAACAGATGGGATGCGAAGTACTCCGACCTGCCCGAGGAACGTTCCTATACACATACTAGATGGGAGCGTAGGAGAATGTAATCAAACTACAACCCCAGATTTGTCATTTTCATTCCAGGATTCTGTATTTCATCCTATGGGAAAGATTCGTGTACAGCCTAACCTGTTTACAAATCCAGCTGCATCTACTACTACTACTGAACATGAAAGTAATGTATCAAGATCTTGTATTGACCAATCATTTCCAGCTATTCCACCTCCATTTACCCCATTCCACCACAATCAAGAGGACTACCACTCATCTCTTTCCTCCACATTTTCAAGTCTTATTGTGTCTTCTCTGCTACAAAACCCTGCAGCCCATGCTGCGGCTAGCTTTGCAGCCACATTCTGGCCTTACACGAATGCGGAGAACAAGGAAGGTTCGCCTGCATGCTCTGCCGGAGGTTTTCCATCTAGCCAAATGAACTCCCCTCCAAATATGGCAGCAATTGCGGCTGCCACTGTAGCTGCAGCAACTGCATGGTGGGCAGCCCATGGATTGCTCCCCTTGTGCGCTCCTCTTCAAACTAGCTTTAGCTGTCCTGTGCCCGTGCCCATGACTGGAGTTTCATCAATGGACAATGATCAAGCTCCTGCAGCCGAGACAGAGAAAGGACAGGATTCTCTTCAAGTTCCTTGCTTGCAGGATCAACTGCAGGACCCAGAACAGTCAGAAGCTGTGCAAGAACAACATTCACCTCCAAAATCACCAACCACAACCTCATCAGACTCTGAAAATGGAGGTGCAAAGCCTGATATTGGATCAAAAGCTGATGATAATGAGGACCTAGCAACAACTGAAGTTCAAGATTTGAACAAAGCAAAGAGCAAAAAACAGGTGGACCGTTCTTCGTGTGGTTCAAACACAACTTCCTGCAGCGAAGTAGAGACGGATGCATTAGAGAAGCAAGAAAAAGGTGAGGAAGAACTAAAAGAACCTGACATAAACCCAGCTTCCGAGTCTAGTTATCGCCGCACTAGGAGTATAAGCAACATGAGTGATTCTTGGAAAGAGAGACACATGAATGATTCATGGAAAGAAGTCTCTGAAGAGGGGCGAATGGCTTTTCAAGCATTATTCTCAAGAGAGGTATTGCCCCAGAGTTTTTCACCTCCACCTGACCTGAATGATAAGGGGCATCAGGACACTATAGAAGGACAGCAAAATTGTAATACCCCGAAAATTCAAGTTAATTTCCGATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

632

Amino Acids

68.48

Weight (kDa)

5.08

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 412, 689
AccB7I CCANNNNNTGG 2 cut(s) 659, 1044
AciI CCGC 7 cut(s) 9, 33, 413, 1022, 1061, 1148, 1669
AclI AACGTT 2 cut(s) 48, 693
AclWI GGATC 3 cut(s) 273, 1350, 1465
AcsI RAATTY 2 cut(s) 523, 1878
AcuI CTGAAG 3 cut(s) 438, 1515, 1764
AfaI GTAC 3 cut(s) 417, 673, 807
AfiI CCNNNNNNNGG 8 cut(s) 64, 479, 659, 687, 1021, 1044, 1256, 1454
AjiI CACGTC 1 cut(s) 180
AjnI CCWGG 1 cut(s) 768
Alw26I GTCTC 6 cut(s) 77, 366, 1292, 1577, 1705, 1744
AlwI GGATC 3 cut(s) 273, 1350, 1465
AlwNI CAGNNNCTG 3 cut(s) 1172, 1373, 1427
Ama87I CYCGRG 2 cut(s) 474, 685
AoxI GGCC 1 cut(s) 1046
ApoI RAATTY 2 cut(s) 523, 1878
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 1211
AspS9I GGNCC 6 cut(s) 21, 174, 263, 1354, 1480, 1537
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 8 cut(s) 52, 79, 337, 632, 1383, 1395, 1625, 1797
AsuNHI GCTAGC 1 cut(s) 1025
AvaI CYCGRG 2 cut(s) 474, 685
AvaII GGWCC 6 cut(s) 21, 174, 263, 1354, 1480, 1537
BaeGI GKGCMC 2 cut(s) 1245, 1251
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
BbsI GAAGAC 4 cut(s) 122, 334, 372, 981
BccI CCATC 5 cut(s) 194, 473, 653, 707, 1114
BciT130I CCWGG 1 cut(s) 770
BclI TGATCA 1 cut(s) 1279
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 6 cut(s) 77, 366, 1292, 1577, 1705, 1744
BfaI CTAG 8 cut(s) 153, 710, 1026, 1110, 1224, 1484, 1659, 1674
BfmI CTRYAG 7 cut(s) 1008, 1158, 1164, 1290, 1349, 1570, 1845
BfuAI ACCTGC 2 cut(s) 412, 689
BglII AGATCT 1 cut(s) 875
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 2 cut(s) 59, 770
Bme18I GGWCC 6 cut(s) 21, 174, 263, 1354, 1480, 1537
BmeT110I CYCGRG 2 cut(s) 474, 685
BmgBI CACGTC 1 cut(s) 180
BmgT120I GGNCC 6 cut(s) 21, 174, 263, 1354, 1480, 1537
BmiI GGNNCC 1 cut(s) 1356
BmrFI CCNGG 2 cut(s) 59, 770
BmsI GCATC 5 cut(s) 529, 654, 845, 1579, 1843
BmtI GCTAGC 1 cut(s) 1029
BpiI GAAGAC 4 cut(s) 122, 334, 372, 981
BpmI CTGGAG 1 cut(s) 1278
BpuEI CTTGAG 1 cut(s) 1762
BpuMI CCSGG 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 686, 1189
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 479, 659, 687, 1021, 1044, 1256, 1454
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 282, 1261
Bse3DI GCAATG 2 cut(s) 490, 647
BseBI CCWGG 1 cut(s) 770
BseDI CCNNGG 2 cut(s) 686, 1189
BseGI GGATG 4 cut(s) 205, 669, 784, 1594
BseLI CCNNNNNNNGG 8 cut(s) 64, 479, 659, 687, 1021, 1044, 1256, 1454
BseMI GCAATG 2 cut(s) 490, 647
BseMII CTCAG 3 cut(s) 348, 369, 433
BseNI ACTGG 2 cut(s) 282, 1261
BseRI GAGGAG 2 cut(s) 361, 1203
BseSI GKGCMC 2 cut(s) 1245, 1251
BseYI CCCAGC 1 cut(s) 1645
BsgI GTGCAG 2 cut(s) 143, 390
BshFI GGCC 1 cut(s) 1048
BsiHKCI CYCGRG 2 cut(s) 474, 685
BsiSI CCGG 3 cut(s) 30, 59, 1095
BslI CCNNNNNNNGG 8 cut(s) 64, 479, 659, 687, 1021, 1044, 1256, 1454
BsmAI GTCTC 6 cut(s) 77, 366, 1292, 1577, 1705, 1744
BsmBI CGTCTC 2 cut(s) 77, 1577
BsmI GAATGC 1 cut(s) 1063
BsnI GGCC 1 cut(s) 1048
BsoBI CYCGRG 2 cut(s) 474, 685
Bsp1286I GDGCHC 2 cut(s) 1245, 1251
Bsp1407I TGTACA 1 cut(s) 805
Bsp143I GATC 5 cut(s) 278, 875, 1279, 1342, 1457
Bsp19I CCATGG 1 cut(s) 1189
BspACI CCGC 7 cut(s) 9, 33, 413, 1022, 1061, 1148, 1669
BspANI GGCC 1 cut(s) 1048
BspCNI CTCAG 3 cut(s) 347, 368, 432
BspLI GGNNCC 1 cut(s) 1356
BspMAI CTGCAG 5 cut(s) 1012, 1168, 1294, 1353, 1574
BspMI ACCTGC 2 cut(s) 412, 689
BspOI GCTAGC 1 cut(s) 1029
BspPI GGATC 3 cut(s) 273, 1350, 1465
BsrDI GCAATG 2 cut(s) 490, 647
BsrFI RCCGGY 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 805
BsrI ACTGG 2 cut(s) 282, 1261
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 686, 1189
BssMI GATC 5 cut(s) 278, 875, 1279, 1342, 1457
BssT1I CCWWGG 1 cut(s) 1189
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 4 cut(s) 121, 1159, 1365, 1541
Bst6I CTCTTC 3 cut(s) 1221, 1326, 1740
BstAPI GCANNNNNTGC 4 cut(s) 1016, 1091, 1145, 1172
BstAUI TGTACA 1 cut(s) 805
BstC8I GCNNGC 5 cut(s) 430, 1027, 1083, 1087, 1337
BstDEI CTNAG 4 cut(s) 299, 334, 355, 419
BstDSI CCRYGG 1 cut(s) 1189
BstENI CCTNNNNNAGG 1 cut(s) 685
BstF5I GGATG 4 cut(s) 205, 669, 784, 1594
BstHHI GCGC 1 cut(s) 1211
BstKTI GATC 5 cut(s) 281, 878, 1282, 1345, 1460
BstMAI GTCTC 6 cut(s) 77, 366, 1292, 1577, 1705, 1744
BstMBI GATC 5 cut(s) 278, 875, 1279, 1342, 1457
BstNI CCWGG 1 cut(s) 770
BstNSI RCATGY 2 cut(s) 188, 1089
BstSCI CCNGG 2 cut(s) 57, 768
BstSFI CTRYAG 7 cut(s) 1008, 1158, 1164, 1290, 1349, 1570, 1845
BstSLI GKGCMC 2 cut(s) 1245, 1251
BstV2I GAAGAC 4 cut(s) 122, 334, 372, 981
BstX2I RGATCY 2 cut(s) 278, 875
BstYI RGATCY 2 cut(s) 278, 875
BsuRI GGCC 1 cut(s) 1048
BtgI CCRYGG 1 cut(s) 1189
BtrI CACGTC 1 cut(s) 180
BtsCI GGATG 4 cut(s) 205, 669, 784, 1594
BtsI GCAGTG 2 cut(s) 252, 364
BtsIMutI CAGTG 6 cut(s) 126, 252, 289, 364, 462, 1155
BveI ACCTGC 2 cut(s) 412, 689
Cac8I GCNNGC 5 cut(s) 430, 1027, 1083, 1087, 1337
CaiI CAGNNNCTG 3 cut(s) 1172, 1373, 1427
CfoI GCGC 1 cut(s) 1211
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 6 cut(s) 21, 174, 263, 1354, 1480, 1537
Csp6I GTAC 3 cut(s) 416, 672, 806
CviQI GTAC 3 cut(s) 416, 672, 806
DdeI CTNAG 4 cut(s) 299, 334, 355, 419
DpnI GATC 5 cut(s) 280, 877, 1281, 1344, 1459
DpnII GATC 5 cut(s) 278, 875, 1279, 1342, 1457
Eam1104I CTCTTC 3 cut(s) 1221, 1326, 1740
EarI CTCTTC 3 cut(s) 1221, 1326, 1740
Eco130I CCWWGG 1 cut(s) 1189
Eco47I GGWCC 6 cut(s) 21, 174, 263, 1354, 1480, 1537
Eco57I CTGAAG 3 cut(s) 438, 1515, 1764
Eco88I CYCGRG 2 cut(s) 474, 685
EcoNI CCTNNNNNAGG 1 cut(s) 685
EcoO109I RGGNCCY 2 cut(s) 1354, 1480
EcoRII CCWGG 1 cut(s) 768
EcoT14I CCWWGG 1 cut(s) 1189
EcoT22I ATGCAT 1 cut(s) 1594
ErhI CCWWGG 1 cut(s) 1189
Esp3I CGTCTC 2 cut(s) 77, 1577
FauI CCCGC 1 cut(s) 26
FbaI TGATCA 1 cut(s) 1279
FokI GGATG 4 cut(s) 212, 676, 771, 1601
FspBI CTAG 8 cut(s) 153, 710, 1026, 1110, 1224, 1484, 1659, 1674
GlaI GCGC 1 cut(s) 1210
GsaI CCCAGC 1 cut(s) 1649
GsuI CTGGAG 1 cut(s) 1278
HaeIII GGCC 1 cut(s) 1048
HapII CCGG 3 cut(s) 30, 59, 1095
HhaI GCGC 1 cut(s) 1211
Hin6I GCGC 1 cut(s) 1209
HinP1I GCGC 1 cut(s) 1209
HpaII CCGG 3 cut(s) 30, 59, 1095
HphI GGTGA 8 cut(s) 52, 79, 337, 632, 1383, 1395, 1625, 1797
Hpy166II GTNNAC 6 cut(s) 177, 239, 250, 806, 822, 1537
Hpy188III TCNNGA 7 cut(s) 476, 557, 873, 938, 1502, 1779, 1838
Hpy8I GTNNAC 6 cut(s) 177, 239, 250, 806, 822, 1537
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 5 cut(s) 31, 94, 462, 1067, 1844
HpyCH4III ACNGT 4 cut(s) 121, 1159, 1365, 1541
HpyCH4IV ACGT 3 cut(s) 48, 179, 693
HpyF3I CTNAG 4 cut(s) 299, 334, 355, 419
HpySE526I ACGT 3 cut(s) 48, 179, 693
HspAI GCGC 1 cut(s) 1209
Ksp22I TGATCA 1 cut(s) 1279
Kzo9I GATC 5 cut(s) 278, 875, 1279, 1342, 1457
LmnI GCTCC 8 cut(s) 61, 169, 191, 374, 717, 1203, 1216, 1291
LweI GCATC 5 cut(s) 529, 654, 845, 1579, 1843
MaeI CTAG 8 cut(s) 153, 710, 1026, 1110, 1224, 1484, 1659, 1674
MaeII ACGT 3 cut(s) 48, 179, 693
MaeIII GTNAC 1 cut(s) 496
MalI GATC 5 cut(s) 280, 877, 1281, 1344, 1459
MboI GATC 5 cut(s) 278, 875, 1279, 1342, 1457
MfeI CAATTG 1 cut(s) 1143
MflI RGATCY 2 cut(s) 278, 875
MhlI GDGCHC 2 cut(s) 1245, 1251
MluCI AATT 7 cut(s) 16, 523, 640, 1143, 1861, 1878, 1888
MlyI GAGTC 4 cut(s) 158, 368, 1418, 1664
MmeI TCCRAC 4 cut(s) 169, 191, 567, 701
Mph1103I ATGCAT 1 cut(s) 1594
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 3 cut(s) 510, 606, 1887
MslI CAYNNNNRTG 1 cut(s) 1719
MspA1I CMGCKG 2 cut(s) 11, 833
MspI CCGG 3 cut(s) 30, 59, 1095
MspR9I CCNGG 2 cut(s) 59, 770
MunI CAATTG 1 cut(s) 1143
Mva1269I GAATGC 1 cut(s) 1063
MvaI CCWGG 1 cut(s) 770
NciI CCSGG 1 cut(s) 59
NcoI CCATGG 1 cut(s) 1189
NdeII GATC 5 cut(s) 278, 875, 1279, 1342, 1457
NheI GCTAGC 1 cut(s) 1025
NlaIV GGNNCC 1 cut(s) 1356
NmeAIII GCCGAG 1 cut(s) 1321
NmuCI GTSAC 1 cut(s) 496
NsiI ATGCAT 1 cut(s) 1594
NspI RCATGY 2 cut(s) 188, 1089
PaeI GCATGC 1 cut(s) 1089
PaeR7I CTCGAG 1 cut(s) 474
PctI GAATGC 1 cut(s) 1063
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 6 cut(s) 488, 773, 799, 1316, 1697, 1724
PflMI CCANNNNNTGG 2 cut(s) 659, 1044
PfoI TCCNGGA 1 cut(s) 768
PleI GAGTC 4 cut(s) 157, 367, 1418, 1663
PpsI GAGTC 4 cut(s) 157, 367, 1418, 1663
PpuMI RGGWCCY 2 cut(s) 1354, 1480
Psp1406I AACGTT 2 cut(s) 48, 693
Psp5II RGGWCCY 2 cut(s) 1354, 1480
Psp6I CCWGG 1 cut(s) 768
PspFI CCCAGC 1 cut(s) 1645
PspGI CCWGG 1 cut(s) 768
PspN4I GGNNCC 1 cut(s) 1356
PspPI GGNCC 6 cut(s) 21, 174, 263, 1354, 1480, 1537
PspPPI RGGWCCY 2 cut(s) 1354, 1480
PstI CTGCAG 5 cut(s) 1012, 1168, 1294, 1353, 1574
PstNI CAGNNNCTG 3 cut(s) 1172, 1373, 1427
PsuI RGATCY 2 cut(s) 278, 875
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 3 cut(s) 417, 673, 807
RsaNI GTAC 3 cut(s) 416, 672, 806
RseI CAYNNNNRTG 1 cut(s) 1719
SaqAI TTAA 3 cut(s) 510, 606, 1887
Sau3AI GATC 5 cut(s) 278, 875, 1279, 1342, 1457
Sau96I GGNCC 6 cut(s) 21, 174, 263, 1354, 1480, 1537
ScaI AGTACT 1 cut(s) 673
SchI GAGTC 4 cut(s) 158, 368, 1418, 1664
ScrFI CCNGG 2 cut(s) 59, 770
SduI GDGCHC 2 cut(s) 1245, 1251
SfaNI GCATC 5 cut(s) 529, 654, 845, 1579, 1843
SfcI CTRYAG 7 cut(s) 1008, 1158, 1164, 1290, 1349, 1570, 1845
Sfr274I CTCGAG 1 cut(s) 474
SinI GGWCC 6 cut(s) 21, 174, 263, 1354, 1480, 1537
SlaI CTCGAG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 1719
SmlI CTYRAG 2 cut(s) 474, 1777
SmoI CTYRAG 2 cut(s) 474, 1777
SphI GCATGC 1 cut(s) 1089
Sse9I AATT 7 cut(s) 16, 523, 640, 1143, 1861, 1878, 1888
SsiI CCGC 7 cut(s) 9, 33, 413, 1022, 1061, 1148, 1669
SspMI CTAG 8 cut(s) 153, 710, 1026, 1110, 1224, 1484, 1659, 1674
StyD4I CCNGG 2 cut(s) 57, 768
StyI CCWWGG 1 cut(s) 1189
TaaI ACNGT 4 cut(s) 121, 1159, 1365, 1541
TaiI ACGT 3 cut(s) 51, 182, 696
TaqI TCGA 3 cut(s) 54, 270, 475
TasI AATT 7 cut(s) 16, 523, 640, 1143, 1861, 1878, 1888
TatI WGTACW 2 cut(s) 671, 805
TauI GCSGC 4 cut(s) 11, 1025, 1151, 1671
TfiI GAWTC 6 cut(s) 488, 773, 799, 1316, 1697, 1724
Tru1I TTAA 3 cut(s) 510, 606, 1887
Tru9I TTAA 3 cut(s) 510, 606, 1887
TscAI CASTG 6 cut(s) 126, 252, 289, 371, 462, 1162
TseFI GTSAC 1 cut(s) 496
Tsp45I GTSAC 1 cut(s) 496
TspGWI ACGGA 2 cut(s) 101, 1601
TspRI CASTG 6 cut(s) 126, 252, 289, 371, 462, 1162
Van91I CCANNNNNTGG 2 cut(s) 659, 1044
VpaK11BI GGWCC 6 cut(s) 21, 174, 263, 1354, 1480, 1537
XagI CCTNNNNNAGG 1 cut(s) 685
XapI RAATTY 2 cut(s) 523, 1878
XceI RCATGY 2 cut(s) 188, 1089
XhoI CTCGAG 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 8 cut(s) 153, 710, 1026, 1110, 1224, 1484, 1659, 1674
ZrmI AGTACT 1 cut(s) 673
Zsp2I ATGCAT 1 cut(s) 1594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.