Rorug01G0288000
MYB Family

Protein LHY-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001426
Physical Location & Seq
Reverse (-)
40268157 .. 40271145
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0288000.1

Sequence Viewer

Length: 867 bp
ATGAGTGGAGAACATACTGTGCCAAAGCAAAAGAAAACCGAAAGGGGAGAAAGGAAGCCAAATCCACAAAACCCAGAAACGATTTGGTGGTTTTCTTTCACTCACTGGAATTCTATACAGACATCTATCTTTGAACAGGGAATGGGAGGTTGCTGCTGTTCTTCCAGAAAAGCTCATCTCCATGGAGCACCTGTGTATTTCTATTGTTCACCAGCTTTGGAAGAGGAAGAGTCCTTAAGATCCCATGATGTTGCAGTCTCTGCAATAACTGCAGGAATCCTAGTTAATCTGGATCTGGAAACATCAATACCAGACACTTACAGATCCCCTCCTATACCCCTGCCATATGATATGGTCTTTGGATGTCCACAATCAACAGATTCTGATTCTGTCAGAGAAACAAATAGTTGTAGTAGTTTTGAAACTTCACCTACATGTGGAGATCTTGAGGAATCAGACTGCAAAGTTCAAGAAAGTTCTTTGCCGATCTCACCAAAGAAGTTAAAACTTTCAAAATCCAATAAAGTAAATGTTTTAGCAGAAGAAGATGAGGATGTTTGTCCAATTTGTCTTGAAGAGTATGAAACAGAGAATCCAGATTTCACCACAAAATGCGAACACCACTATCACCTCTCATGCATTCTTGAGTGGATGGAAAGAAGTGATGCCTGTCCTATATGTGATCAGCTCCTTACTGCTCCTGCGCTTGAGGTCAAAGATGCAAGCTCAGTTGACCGTAGGGCTGTGCATTGTGAGTGGAGCAATCAAGAAGTTAAGACCAAGGCCATGGAAAGCAGAGAACCTATTGAGTTAATGCCAGTGCTGCCTTCAATGTTGGTTTGCTACATCTCTTCTGTACATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0042754 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043393 GO:0043433 GO:0043496 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051098 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

288

Amino Acids

32.33

Weight (kDa)

4.81

Isoelectric Point (pI)

67.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 184 - 227 1.2e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 186 - 227 1.9e-11 Ring finger domain
zf-C3HC4_2 PF13923 187 - 227 3.2e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 187 - 227 5e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 187 - 218 1.4e-06 RING-type zinc-finger
zf-RING_11 PF17123 187 - 214 9.8e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 234, 300, 318
AcsI RAATTY 1 cut(s) 109
AfaI GTAC 1 cut(s) 858
AfiI CCNNNNNNNGG 1 cut(s) 437
AflII CTTAAG 1 cut(s) 235
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 6 cut(s) 134, 422, 470, 513, 575, 831
AluBI AGCT 4 cut(s) 173, 215, 688, 726
AluI AGCT 4 cut(s) 173, 215, 688, 726
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 3 cut(s) 234, 300, 318
AlwNI CAGNNNCTG 2 cut(s) 260, 383
AoxI GGCC 1 cut(s) 783
ApeKI GCWGC 2 cut(s) 153, 823
ApoI RAATTY 1 cut(s) 109
AspLEI GCGC 1 cut(s) 706
AsuHPI GGTGA 5 cut(s) 201, 420, 483, 595, 620
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 140, 810
BccI CCATC 1 cut(s) 646
BclI TGATCA 1 cut(s) 682
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 2 cut(s) 281, 865
BfmI CTRYAG 1 cut(s) 270
BfrI CTTAAG 1 cut(s) 235
BglII AGATCT 1 cut(s) 442
BisI GCNGC 2 cut(s) 154, 824
BlsI GCNGC 2 cut(s) 155, 825
BmsI GCATC 2 cut(s) 655, 709
BpuEI CTTGAG 3 cut(s) 467, 665, 728
BsaJI CCNNGG 3 cut(s) 181, 780, 786
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse1I ACTGG 2 cut(s) 110, 818
BseDI CCNNGG 3 cut(s) 181, 780, 786
BseGI GGATG 3 cut(s) 368, 559, 657
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMII CTCAG 1 cut(s) 741
BseNI ACTGG 2 cut(s) 110, 818
BseXI GCAGC 2 cut(s) 140, 810
BshFI GGCC 1 cut(s) 785
BsiHKAI GWGCWC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 1 cut(s) 785
Bsp1286I GDGCHC 1 cut(s) 190
Bsp1407I TGTACA 1 cut(s) 856
Bsp143I GATC 6 cut(s) 239, 292, 323, 442, 486, 682
Bsp19I CCATGG 2 cut(s) 181, 786
BspANI GGCC 1 cut(s) 785
BspCNI CTCAG 1 cut(s) 740
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 3 cut(s) 234, 300, 318
BspTI CTTAAG 1 cut(s) 235
BsrGI TGTACA 1 cut(s) 856
BsrI ACTGG 2 cut(s) 110, 818
BssECI CCNNGG 3 cut(s) 181, 780, 786
BssMI GATC 6 cut(s) 239, 292, 323, 442, 486, 682
BssT1I CCWWGG 3 cut(s) 181, 780, 786
Bst4CI ACNGT 2 cut(s) 19, 737
Bst6I CTCTTC 4 cut(s) 216, 222, 570, 856
BstAFI CTTAAG 1 cut(s) 235
BstAPI GCANNNNNTGC 2 cut(s) 260, 269
BstAUI TGTACA 1 cut(s) 856
BstC8I GCNNGC 1 cut(s) 724
BstDEI CTNAG 1 cut(s) 727
BstDSI CCRYGG 2 cut(s) 181, 786
BstF5I GGATG 3 cut(s) 368, 559, 657
BstHHI GCGC 1 cut(s) 706
BstKTI GATC 6 cut(s) 242, 295, 326, 445, 489, 685
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 6 cut(s) 239, 292, 323, 442, 486, 682
BstMWI GCNNNNNNNGC 3 cut(s) 260, 269, 823
BstNSI RCATGY 1 cut(s) 438
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 140, 810
BstX2I RGATCY 4 cut(s) 239, 292, 323, 442
BstXI CCANNNNNNTGG 1 cut(s) 787
BstYI RGATCY 4 cut(s) 239, 292, 323, 442
BsuRI GGCC 1 cut(s) 785
BtgI CCRYGG 2 cut(s) 181, 786
BtsCI GGATG 3 cut(s) 368, 559, 657
BtsIMutI CAGTG 2 cut(s) 103, 825
Cac8I GCNNGC 1 cut(s) 724
CaiI CAGNNNCTG 2 cut(s) 260, 383
CfoI GCGC 1 cut(s) 706
Csp6I GTAC 1 cut(s) 857
CviAII CATG 5 cut(s) 182, 245, 435, 636, 787
CviJI RGCY 7 cut(s) 58, 173, 215, 688, 726, 743, 785
CviKI_1 RGCY 7 cut(s) 58, 173, 215, 688, 726, 743, 785
CviQI GTAC 1 cut(s) 857
DdeI CTNAG 1 cut(s) 727
DpnI GATC 6 cut(s) 241, 294, 325, 444, 488, 684
DpnII GATC 6 cut(s) 239, 292, 323, 442, 486, 682
Eam1104I CTCTTC 4 cut(s) 216, 222, 570, 856
EarI CTCTTC 4 cut(s) 216, 222, 570, 856
Eco130I CCWWGG 3 cut(s) 181, 780, 786
EcoRI GAATTC 1 cut(s) 109
EcoT14I CCWWGG 3 cut(s) 181, 780, 786
EcoT22I ATGCAT 1 cut(s) 641
ErhI CCWWGG 3 cut(s) 181, 780, 786
FaeI CATG 5 cut(s) 185, 248, 438, 639, 790
FatI CATG 5 cut(s) 181, 244, 434, 635, 786
FauNDI CATATG 1 cut(s) 346
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 2 cut(s) 154, 824
FokI GGATG 3 cut(s) 375, 566, 664
Fsp4HI GCNGC 2 cut(s) 154, 824
FspBI CTAG 2 cut(s) 281, 865
GlaI GCGC 1 cut(s) 705
GluI GCNGC 2 cut(s) 154, 824
HaeIII GGCC 1 cut(s) 785
HhaI GCGC 1 cut(s) 706
Hin1II CATG 5 cut(s) 185, 248, 438, 639, 790
Hin6I GCGC 1 cut(s) 704
HinP1I GCGC 1 cut(s) 704
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 6 cut(s) 230, 276, 380, 386, 452, 592
HphI GGTGA 5 cut(s) 201, 420, 483, 595, 620
Hpy166II GTNNAC 3 cut(s) 209, 368, 733
Hpy188I TCNGA 3 cut(s) 385, 395, 457
Hpy188III TCNNGA 9 cut(s) 165, 290, 296, 446, 470, 572, 596, 644, 767
Hpy8I GTNNAC 3 cut(s) 209, 368, 733
HpyAV CCTTC 1 cut(s) 837
HpyCH4III ACNGT 2 cut(s) 19, 737
HpyCH4V TGCA 7 cut(s) 254, 263, 272, 462, 639, 722, 748
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 269, 823
HpyF3I CTNAG 1 cut(s) 727
Hsp92II CATG 5 cut(s) 185, 248, 438, 639, 790
HspAI GCGC 1 cut(s) 704
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 6 cut(s) 239, 292, 323, 442, 486, 682
LmnI GCTCC 4 cut(s) 185, 693, 703, 759
Lsp1109I GCAGC 2 cut(s) 140, 810
LweI GCATC 2 cut(s) 655, 709
MaeI CTAG 2 cut(s) 281, 865
MalI GATC 6 cut(s) 241, 294, 325, 444, 488, 684
MboI GATC 6 cut(s) 239, 292, 323, 442, 486, 682
MboII GAAGA 7 cut(s) 153, 233, 239, 554, 557, 587, 843
MflI RGATCY 4 cut(s) 239, 292, 323, 442
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 109, 564
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 7 cut(s) 140, 217, 339, 442, 544, 641, 703
Mph1103I ATGCAT 1 cut(s) 641
MseI TTAA 5 cut(s) 236, 285, 503, 774, 812
MslI CAYNNNNRTG 2 cut(s) 180, 433
MspCI CTTAAG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 639
MwoI GCNNNNNNNGC 3 cut(s) 260, 269, 823
NcoI CCATGG 2 cut(s) 181, 786
NdeI CATATG 1 cut(s) 346
NdeII GATC 6 cut(s) 239, 292, 323, 442, 486, 682
NlaIII CATG 5 cut(s) 185, 248, 438, 639, 790
NsiI ATGCAT 1 cut(s) 641
NspI RCATGY 1 cut(s) 438
PciI ACATGT 1 cut(s) 434
PctI GAATGC 1 cut(s) 639
PfeI GAWTC 5 cut(s) 276, 380, 386, 452, 592
PkrI GCNGC 2 cut(s) 155, 825
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PscI ACATGT 1 cut(s) 434
PstI CTGCAG 1 cut(s) 274
PstNI CAGNNNCTG 2 cut(s) 260, 383
PsuI RGATCY 4 cut(s) 239, 292, 323, 442
RsaI GTAC 1 cut(s) 858
RsaNI GTAC 1 cut(s) 857
RseI CAYNNNNRTG 2 cut(s) 180, 433
SaqAI TTAA 5 cut(s) 236, 285, 503, 774, 812
SatI GCNGC 2 cut(s) 154, 824
Sau3AI GATC 6 cut(s) 239, 292, 323, 442, 486, 682
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 190
SfaNI GCATC 2 cut(s) 655, 709
SfcI CTRYAG 1 cut(s) 270
SmiMI CAYNNNNRTG 2 cut(s) 180, 433
SmlI CTYRAG 4 cut(s) 235, 446, 644, 707
SmoI CTYRAG 4 cut(s) 235, 446, 644, 707
Sse9I AATT 2 cut(s) 109, 564
SspMI CTAG 2 cut(s) 281, 865
StyI CCWWGG 3 cut(s) 181, 780, 786
TaaI ACNGT 2 cut(s) 19, 737
TasI AATT 2 cut(s) 109, 564
TatI WGTACW 1 cut(s) 856
TfiI GAWTC 5 cut(s) 276, 380, 386, 452, 592
Tru1I TTAA 5 cut(s) 236, 285, 503, 774, 812
Tru9I TTAA 5 cut(s) 236, 285, 503, 774, 812
TscAI CASTG 2 cut(s) 110, 825
TseI GCWGC 2 cut(s) 153, 823
TspDTI ATGAA 1 cut(s) 597
TspRI CASTG 2 cut(s) 110, 825
Vha464I CTTAAG 1 cut(s) 235
XapI RAATTY 1 cut(s) 109
XceI RCATGY 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
XspI CTAG 2 cut(s) 281, 865
Zsp2I ATGCAT 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.