Rorug01G0288100
MYB Family

Protein LHY-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001426
Physical Location & Seq
Forward (+)
40280844 .. 40281356
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0288100.1

Sequence Viewer

Length: 513 bp
ATGACTAATGACTATCAAGTTTTTCCAGATTCCGAGCATTATACCTGTCTCATTGACCTTCTTGGGCGAGCTGGTCTTTTGGATGAGGCTTTCATTGTTTTGACCTCGATGTCAATCAAACCTGATCCAAGTACATTTGGAGCATTCATAGGGGCTTGTAAAGTCAATGGAAATGTAGGATTAGCAAAATGGGCTGCAGAAAAGCTTTTTACATTAGAACCAAACAAACCTGTGAATTGTACTCTCATGTCTAACATCTATTCTACTGAAGGTCATTGGGCTGATGTTGCAAGGGTACGCCAAATGATGAGGTACAGTTGTGATCAGAAAGCTCCAGGTTGTAGCTGGCTGGAGGTAGGCGGCGACATTCATACGTTTGTATCAGGTGATGAGTCCCACCCACAAGCATCACAGGTGTATGTTATGCTAGGGATGTTGCTCAGGGTGATGAAGGAGAACTGGAGAAGAATTATATGTAGGATCAGTGATCAAGTTAGATACAGTTCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0042754 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043393 GO:0043433 GO:0043496 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051098 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

170

Amino Acids

19.02

Weight (kDa)

6.06

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 7 - 37 6.6e-06 PPR repeat
E_motif PF20431 58 - 118 1.8e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 109
AciI CCGC 1 cut(s) 360
AclWI GGATC 2 cut(s) 119, 488
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 4 cut(s) 133, 241, 297, 314
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 4 cut(s) 71, 205, 332, 345
AluI AGCT 4 cut(s) 71, 205, 332, 345
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 2 cut(s) 119, 488
ApeKI GCWGC 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 398, 457
BaeI ACNNNNGTAYC 4 cut(s) 304, 337, 363, 396
BbvI GCAGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 2 cut(s) 322, 487
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 2 cut(s) 195, 361
BlsI GCNGC 2 cut(s) 196, 362
Bme1390I CCNGG 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 416
BpmI CTGGAG 3 cut(s) 318, 371, 481
Bpu10I CCTNAGC 1 cut(s) 440
BsaBI GATNNNNATC 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 464
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 88, 438
BseJI GATNNNNATC 1 cut(s) 113
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 1 cut(s) 464
BseXI GCAGC 1 cut(s) 181
BslFI GGGAC 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 1 cut(s) 143
Bsp143I GATC 4 cut(s) 124, 322, 480, 487
BspACI CCGC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 453
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 2 cut(s) 119, 488
BsrI ACTGG 1 cut(s) 464
BssMI GATC 4 cut(s) 124, 322, 480, 487
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 317, 503
BstC8I GCNNGC 2 cut(s) 69, 347
BstDEI CTNAG 1 cut(s) 440
BstF5I GGATG 2 cut(s) 88, 438
BstKTI GATC 4 cut(s) 127, 325, 483, 490
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 4 cut(s) 124, 322, 480, 487
BstMWI GCNNNNNNNGC 2 cut(s) 191, 287
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 181
BtsCI GGATG 2 cut(s) 88, 438
BtsIMutI CAGTG 1 cut(s) 490
Cac8I GCNNGC 2 cut(s) 69, 347
Csp6I GTAC 4 cut(s) 132, 240, 296, 313
CviAII CATG 1 cut(s) 247
CviJI RGCY 9 cut(s) 71, 89, 155, 194, 205, 281, 332, 345, 349
CviKI_1 RGCY 9 cut(s) 71, 89, 155, 194, 205, 281, 332, 345, 349
CviQI GTAC 4 cut(s) 132, 240, 296, 313
DdeI CTNAG 1 cut(s) 440
DpnI GATC 4 cut(s) 126, 324, 482, 489
DpnII GATC 4 cut(s) 124, 322, 480, 487
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 250
FaiI YATR 8 cut(s) 42, 149, 248, 372, 420, 425, 473, 475
FaqI GGGAC 1 cut(s) 379
FatI CATG 1 cut(s) 246
FbaI TGATCA 2 cut(s) 322, 487
Fnu4HI GCNGC 2 cut(s) 195, 361
FokI GGATG 2 cut(s) 95, 445
Fsp4HI GCNGC 2 cut(s) 195, 361
FspBI CTAG 1 cut(s) 428
GluI GCNGC 2 cut(s) 195, 361
GsuI CTGGAG 3 cut(s) 318, 371, 481
Hin1II CATG 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 29, 392
HphI GGTGA 2 cut(s) 398, 457
Hpy188I TCNGA 2 cut(s) 34, 327
Hpy188III TCNNGA 2 cut(s) 26, 507
HpyAV CCTTC 3 cut(s) 68, 263, 445
HpyCH4III ACNGT 2 cut(s) 317, 503
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 2 cut(s) 197, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 287
HpyF3I CTNAG 1 cut(s) 440
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 1 cut(s) 250
Ksp22I TGATCA 2 cut(s) 322, 487
Kzo9I GATC 4 cut(s) 124, 322, 480, 487
LmnI GCTCC 2 cut(s) 140, 337
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 416
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 374
MalI GATC 4 cut(s) 126, 324, 482, 489
MboI GATC 4 cut(s) 124, 322, 480, 487
MboII GAAGA 1 cut(s) 477
MluCI AATT 2 cut(s) 235, 468
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 4 cut(s) 79, 115, 303, 346
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 191, 287
NdeII GATC 4 cut(s) 124, 322, 480, 487
NlaIII CATG 1 cut(s) 250
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 196, 362
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PstI CTGCAG 1 cut(s) 199
RsaI GTAC 4 cut(s) 133, 241, 297, 314
RsaNI GTAC 4 cut(s) 132, 240, 296, 313
SatI GCNGC 2 cut(s) 195, 361
Sau3AI GATC 4 cut(s) 124, 322, 480, 487
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 336
SfaNI GCATC 1 cut(s) 416
SfcI CTRYAG 1 cut(s) 195
Sse9I AATT 2 cut(s) 235, 468
SsiI CCGC 1 cut(s) 360
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 317, 503
TaiI ACGT 1 cut(s) 377
TaqI TCGA 1 cut(s) 107
TasI AATT 2 cut(s) 235, 468
TatI WGTACW 2 cut(s) 131, 239
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 1 cut(s) 29
TscAI CASTG 1 cut(s) 490
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 4 cut(s) 82, 136, 359, 464
TspRI CASTG 1 cut(s) 490
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.