Rh1CG280600
MYB Family

Protein LHY-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001426
Physical Location & Seq
Forward (+)
55160836 .. 55169941
9106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG280600.1

Sequence Viewer

Length: 1713 bp
ATGGACAATTTCTCATCTGGGGAAGATCTGATCGTTAAGGCAAGAAAGCCATATACTATTACCAAGCAGCGAGAGCGGTGGACTGAGGATGAGCATAATAGGTTTCTTGAAGCCTTGAAGCTCTACGGGCGAGCATGGCAGCGCATTGAAGAACATATAGGAACAAAGACTGCTGTGCAGATCCGAAGTCATGCACAGAAGTTCTTTTCAAAGCTGGAGAAGGAGGCAGTCAGTAAAGGTGTTCCTGTAGGACAATCAATTGACATAGATATTCCGCCTCCGCGCCCTAAAAGGAAACCAAGCAATCCTTATCCTCGGAAGTCTAGTGAAGCTGCTCCAACATGGTCTACGTCGCATGTTGGAGCAAAGGATGGAAAACTTGTGTCATCAGCTTCTTCTTCACATTGTAAACAAGCAGTGGACTTGGAGAAAGGACCACTCGATGAGAGATCCAGTGGAGAAGAAAAGCTAAGTTATGGAAAAGAAAACAAAGATGAAAGTTGCTCAGAAGTCTTCACCTTACTCTCAGAGTCTCACTGCTCCTCTGTGTCTTCTGCAAACAAAAGTTCCATACCTGCACAAGCGGTACTCAGAAATGCTTGCACTTTTAGAGAGTTTGTGCCTTCAGTGAAAAAGGTAATCCCTCGAGATGGCAATGAATCTTATGTCACTATTGAACTTAAAGGAAATGAGAATTTGAAGAAAACTGATGCCAAAAAGATAGTTCAAGATAATGCCACAAGTGAAGCCTCAAAGTTGGAGAACACTAATGCTTTTAAGTTGGTTCAAGGTGAGAAAGCAGATGATTTGAATTGTTCATTGCCAACAGATGGGATGCGAAGTACTCCGACCTGCCGGAGGAACGTTCCTATACACATACTGGATGGGAGCGTAGGAGAATGTAATCAAACTACAACCCCAGATTTGTCATTTTCATTCCAGGATTCTGTATTTCATCCCATGGGAAAGATTCGTGTACAGCCTAACCTGTTTACAAATCCAGCTGCATCTACTACTACTGAACATGAAAGTAATGTATCAAGATCTTGTATTGACCAATCATTTCCAGCTATTCCACCTCCATTTACCCCATTCCACCACAATCAAGAGGACTACCACTCATCTCTTTCCTCCACATTTTCAAGTCTTATTGTGTCTTCTCTGCTACAAAACCCTGCAGCCCATGCTGCGGCTAGCTTTGCAGCCACATTCTGGCCTTACACGAATGTGGAGAACAAGGAAGGTTCTCCTGCATGCTCTGCTGGAGGTTTTCCATCTAGCCAAATGAACTCCCCTCCAAATATGGCAGCAATTGCTGCTGCCACTGTAGCTGCAGCAACTGCATGGTGGGCAGCCCATGGATTGCTCCCCTTGTGCGCTCCTCTTCAAACTAGCTTTAGCTGTCCTGTGCCCGTGCCCATGACTGGAGTTTCATCAATGGACAATGATCAAGCTCCTGCAGCCGAGACAGAGAAAGGACAGGATTCTCCTCAAGTTCCTTGCTTGCAGGATCAACTGCAGGACCCAGAACAGTCAGAAGCTGTGCAAGAACAACACTCACCTCCAAAATCACCAACCACAACCTCATCAGACTCTGAAAATGGAGGTGCAAAGCCTGATATTGGATCAAAAGCTGATGATAATGAGGACCTAGCAACAACTGAAGTTCAAGATTTGAACAAAGCAAAGAGCAAAAAACAGGTTTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0042754 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043393 GO:0043433 GO:0043496 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051098 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

570

Amino Acids

61.82

Weight (kDa)

5.81

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 24 - 67 4.8e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 583, 860
AccB7I CCANNNNNTGG 2 cut(s) 830, 1212
AccBSI CCGCTC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 347
AccII CGCG 1 cut(s) 283
AciI CCGC 5 cut(s) 76, 275, 281, 584, 1190
AclI AACGTT 1 cut(s) 864
AclWI GGATC 4 cut(s) 175, 444, 1518, 1633
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 2 cut(s) 609, 1683
AfaI GTAC 3 cut(s) 588, 844, 978
AfiI CCNNNNNNNGG 7 cut(s) 650, 830, 858, 1189, 1212, 1424, 1622
AjnI CCWGG 1 cut(s) 939
AleI CACNNNNGTG 1 cut(s) 1226
Alw26I GTCTC 2 cut(s) 537, 1460
AlwI GGATC 4 cut(s) 175, 444, 1518, 1633
AlwNI CAGNNNCTG 3 cut(s) 1340, 1541, 1595
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 1 cut(s) 1214
ApoI RAATTY 1 cut(s) 694
AspLEI GCGC 3 cut(s) 144, 285, 1379
AspS9I GGNCC 3 cut(s) 434, 1522, 1648
AsuHPI GGTGA 4 cut(s) 508, 803, 1551, 1563
AsuNHI GCTAGC 1 cut(s) 1193
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 3 cut(s) 434, 1522, 1648
BaeGI GKGCMC 2 cut(s) 1413, 1419
BbsI GAAGAC 3 cut(s) 505, 543, 1149
BccI CCATC 5 cut(s) 365, 644, 824, 878, 1282
BciT130I CCWGG 1 cut(s) 941
BclI TGATCA 1 cut(s) 1447
BcoDI GTCTC 2 cut(s) 537, 1460
BfaI CTAG 5 cut(s) 324, 1194, 1278, 1392, 1652
BfmI CTRYAG 6 cut(s) 246, 1176, 1326, 1332, 1458, 1517
BfuAI ACCTGC 2 cut(s) 583, 860
BglII AGATCT 2 cut(s) 25, 1043
BmcAI AGTACT 1 cut(s) 844
Bme1390I CCNGG 1 cut(s) 941
Bme18I GGWCC 3 cut(s) 434, 1522, 1648
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 3 cut(s) 434, 1522, 1648
BmiI GGNNCC 1 cut(s) 1524
BmrFI CCNGG 1 cut(s) 941
BmsI GCATC 3 cut(s) 700, 825, 1016
BmtI GCTAGC 1 cut(s) 1197
BpiI GAAGAC 3 cut(s) 505, 543, 1149
BpmI CTGGAG 3 cut(s) 236, 1284, 1446
BpuEI CTTGAG 1 cut(s) 1476
BsaJI CCNNGG 3 cut(s) 314, 960, 1357
Bsc4I CCNNNNNNNGG 7 cut(s) 650, 830, 858, 1189, 1212, 1424, 1622
Bse1I ACTGG 3 cut(s) 453, 885, 1429
Bse3DI GCAATG 2 cut(s) 661, 818
BseBI CCWGG 1 cut(s) 941
BseDI CCNNGG 3 cut(s) 314, 960, 1357
BseGI GGATG 5 cut(s) 94, 376, 840, 889, 955
BseLI CCNNNNNNNGG 7 cut(s) 650, 830, 858, 1189, 1212, 1424, 1622
BseMI GCAATG 2 cut(s) 661, 818
BseMII CTCAG 4 cut(s) 75, 519, 540, 604
BseNI ACTGG 3 cut(s) 453, 885, 1429
BseRI GAGGAG 3 cut(s) 532, 1371, 1479
BseSI GKGCMC 2 cut(s) 1413, 1419
BsgI GTGCAG 2 cut(s) 197, 561
Bsh1236I CGCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 1216
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 1 cut(s) 856
BslI CCNNNNNNNGG 7 cut(s) 650, 830, 858, 1189, 1212, 1424, 1622
BsmAI GTCTC 2 cut(s) 537, 1460
BsnI GGCC 1 cut(s) 1216
BsoBI CYCGRG 1 cut(s) 645
Bsp1286I GDGCHC 2 cut(s) 1413, 1419
Bsp1407I TGTACA 1 cut(s) 976
Bsp143I GATC 8 cut(s) 25, 30, 180, 449, 1043, 1447, 1510, 1625
Bsp19I CCATGG 2 cut(s) 960, 1357
BspACI CCGC 5 cut(s) 76, 275, 281, 584, 1190
BspANI GGCC 1 cut(s) 1216
BspCNI CTCAG 4 cut(s) 76, 518, 539, 603
BspFNI CGCG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 1524
BspMAI CTGCAG 4 cut(s) 1180, 1336, 1462, 1521
BspMI ACCTGC 2 cut(s) 583, 860
BspOI GCTAGC 1 cut(s) 1197
BspPI GGATC 4 cut(s) 175, 444, 1518, 1633
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 2 cut(s) 661, 818
BsrGI TGTACA 1 cut(s) 976
BsrI ACTGG 3 cut(s) 453, 885, 1429
BssECI CCNNGG 3 cut(s) 314, 960, 1357
BssMI GATC 8 cut(s) 25, 30, 180, 449, 1043, 1447, 1510, 1625
BssT1I CCWWGG 2 cut(s) 960, 1357
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 2 cut(s) 1327, 1533
Bst6I CTCTTC 1 cut(s) 1389
BstAPI GCANNNNNTGC 5 cut(s) 1184, 1259, 1313, 1316, 1340
BstAUI TGTACA 1 cut(s) 976
BstC8I GCNNGC 5 cut(s) 132, 601, 1195, 1255, 1505
BstDEI CTNAG 5 cut(s) 84, 470, 505, 526, 590
BstDSI CCRYGG 2 cut(s) 960, 1357
BstENI CCTNNNNNAGG 1 cut(s) 856
BstF5I GGATG 5 cut(s) 94, 376, 840, 889, 955
BstFNI CGCG 1 cut(s) 283
BstHHI GCGC 3 cut(s) 144, 285, 1379
BstKTI GATC 8 cut(s) 28, 33, 183, 452, 1046, 1450, 1513, 1628
BstMAI GTCTC 2 cut(s) 537, 1460
BstMBI GATC 8 cut(s) 25, 30, 180, 449, 1043, 1447, 1510, 1625
BstNI CCWGG 1 cut(s) 941
BstNSI RCATGY 2 cut(s) 359, 1257
BstSCI CCNGG 1 cut(s) 939
BstSFI CTRYAG 6 cut(s) 246, 1176, 1326, 1332, 1458, 1517
BstSLI GKGCMC 2 cut(s) 1413, 1419
BstUI CGCG 1 cut(s) 283
BstV2I GAAGAC 3 cut(s) 505, 543, 1149
BstX2I RGATCY 4 cut(s) 25, 180, 449, 1043
BstYI RGATCY 4 cut(s) 25, 180, 449, 1043
BsuRI GGCC 1 cut(s) 1216
BtgI CCRYGG 2 cut(s) 960, 1357
BtsCI GGATG 5 cut(s) 94, 376, 840, 889, 955
BtsI GCAGTG 2 cut(s) 423, 535
BtsIMutI CAGTG 5 cut(s) 423, 460, 535, 633, 1323
BveI ACCTGC 2 cut(s) 583, 860
Cac8I GCNNGC 5 cut(s) 132, 601, 1195, 1255, 1505
CaiI CAGNNNCTG 3 cut(s) 1340, 1541, 1595
CfoI GCGC 3 cut(s) 144, 285, 1379
Cfr13I GGNCC 3 cut(s) 434, 1522, 1648
Csp6I GTAC 3 cut(s) 587, 843, 977
CviQI GTAC 3 cut(s) 587, 843, 977
DdeI CTNAG 5 cut(s) 84, 470, 505, 526, 590
DpnI GATC 8 cut(s) 27, 32, 182, 451, 1045, 1449, 1512, 1627
DpnII GATC 8 cut(s) 25, 30, 180, 449, 1043, 1447, 1510, 1625
Eam1104I CTCTTC 1 cut(s) 1389
EarI CTCTTC 1 cut(s) 1389
EciI GGCGGA 1 cut(s) 264
Eco130I CCWWGG 2 cut(s) 960, 1357
Eco47I GGWCC 3 cut(s) 434, 1522, 1648
Eco57I CTGAAG 2 cut(s) 609, 1683
Eco88I CYCGRG 1 cut(s) 645
EcoNI CCTNNNNNAGG 1 cut(s) 856
EcoO109I RGGNCCY 2 cut(s) 1522, 1648
EcoRII CCWGG 1 cut(s) 939
EcoT14I CCWWGG 2 cut(s) 960, 1357
ErhI CCWWGG 2 cut(s) 960, 1357
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FbaI TGATCA 1 cut(s) 1447
FblI GTMKAC 1 cut(s) 347
FokI GGATG 5 cut(s) 101, 383, 847, 896, 942
FspBI CTAG 5 cut(s) 324, 1194, 1278, 1392, 1652
GlaI GCGC 3 cut(s) 143, 284, 1378
GsuI CTGGAG 3 cut(s) 236, 1284, 1446
HaeIII GGCC 1 cut(s) 1216
HapII CCGG 1 cut(s) 856
HhaI GCGC 3 cut(s) 144, 285, 1379
Hin6I GCGC 3 cut(s) 142, 283, 1377
HinP1I GCGC 3 cut(s) 142, 283, 1377
HinfI GANTC 6 cut(s) 530, 659, 944, 970, 1484, 1592
HpaII CCGG 1 cut(s) 856
HphI GGTGA 4 cut(s) 508, 803, 1551, 1563
Hpy166II GTNNAC 6 cut(s) 81, 348, 410, 421, 977, 993
Hpy188III TCNNGA 6 cut(s) 107, 647, 728, 1041, 1106, 1670
Hpy8I GTNNAC 6 cut(s) 81, 348, 410, 421, 977, 993
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 3 cut(s) 214, 633, 1235
HpyCH4III ACNGT 2 cut(s) 1327, 1533
HpyCH4IV ACGT 2 cut(s) 350, 864
HpyF3I CTNAG 5 cut(s) 84, 470, 505, 526, 590
HpySE526I ACGT 2 cut(s) 350, 864
HspAI GCGC 3 cut(s) 142, 283, 1377
Ksp22I TGATCA 1 cut(s) 1447
Kzo9I GATC 8 cut(s) 25, 30, 180, 449, 1043, 1447, 1510, 1625
LmnI GCTCC 7 cut(s) 340, 362, 545, 888, 1371, 1384, 1459
LweI GCATC 3 cut(s) 700, 825, 1016
MaeI CTAG 5 cut(s) 324, 1194, 1278, 1392, 1652
MaeII ACGT 2 cut(s) 350, 864
MaeIII GTNAC 1 cut(s) 667
MalI GATC 8 cut(s) 27, 32, 182, 451, 1045, 1449, 1512, 1627
MbiI CCGCTC 1 cut(s) 76
MboI GATC 8 cut(s) 25, 30, 180, 449, 1043, 1447, 1510, 1625
MfeI CAATTG 2 cut(s) 258, 1311
MflI RGATCY 4 cut(s) 25, 180, 449, 1043
MhlI GDGCHC 2 cut(s) 1413, 1419
MluCI AATT 5 cut(s) 7, 258, 694, 811, 1311
MlyI GAGTC 2 cut(s) 539, 1586
MmeI TCCRAC 4 cut(s) 340, 362, 738, 872
MseI TTAA 4 cut(s) 36, 681, 777, 1711
MslI CAYNNNNRTG 1 cut(s) 1226
MspA1I CMGCKG 1 cut(s) 1004
MspI CCGG 1 cut(s) 856
MspR9I CCNGG 1 cut(s) 941
MunI CAATTG 2 cut(s) 258, 1311
MvaI CCWGG 1 cut(s) 941
MvnI CGCG 1 cut(s) 283
NcoI CCATGG 2 cut(s) 960, 1357
NdeII GATC 8 cut(s) 25, 30, 180, 449, 1043, 1447, 1510, 1625
NheI GCTAGC 1 cut(s) 1193
NlaIV GGNNCC 1 cut(s) 1524
NmeAIII GCCGAG 1 cut(s) 1489
NmuCI GTSAC 1 cut(s) 667
NspI RCATGY 2 cut(s) 359, 1257
OliI CACNNNNGTG 1 cut(s) 1226
PaeI GCATGC 1 cut(s) 1257
PaeR7I CTCGAG 1 cut(s) 645
PfeI GAWTC 4 cut(s) 659, 944, 970, 1484
PflMI CCANNNNNTGG 2 cut(s) 830, 1212
PfoI TCCNGGA 1 cut(s) 939
PleI GAGTC 2 cut(s) 538, 1586
PpsI GAGTC 2 cut(s) 538, 1586
PpuMI RGGWCCY 2 cut(s) 1522, 1648
Psp1406I AACGTT 1 cut(s) 864
Psp5II RGGWCCY 2 cut(s) 1522, 1648
Psp6I CCWGG 1 cut(s) 939
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 1 cut(s) 1524
PspPI GGNCC 3 cut(s) 434, 1522, 1648
PspPPI RGGWCCY 2 cut(s) 1522, 1648
PstI CTGCAG 4 cut(s) 1180, 1336, 1462, 1521
PstNI CAGNNNCTG 3 cut(s) 1340, 1541, 1595
PsuI RGATCY 4 cut(s) 25, 180, 449, 1043
PvuII CAGCTG 1 cut(s) 1004
RsaI GTAC 3 cut(s) 588, 844, 978
RsaNI GTAC 3 cut(s) 587, 843, 977
RseI CAYNNNNRTG 1 cut(s) 1226
SaqAI TTAA 4 cut(s) 36, 681, 777, 1711
Sau3AI GATC 8 cut(s) 25, 30, 180, 449, 1043, 1447, 1510, 1625
Sau96I GGNCC 3 cut(s) 434, 1522, 1648
ScaI AGTACT 1 cut(s) 844
SchI GAGTC 2 cut(s) 539, 1586
ScrFI CCNGG 1 cut(s) 941
SduI GDGCHC 2 cut(s) 1413, 1419
SfaNI GCATC 3 cut(s) 700, 825, 1016
SfcI CTRYAG 6 cut(s) 246, 1176, 1326, 1332, 1458, 1517
Sfr274I CTCGAG 1 cut(s) 645
SinI GGWCC 3 cut(s) 434, 1522, 1648
SlaI CTCGAG 1 cut(s) 645
SmiMI CAYNNNNRTG 1 cut(s) 1226
SmlI CTYRAG 2 cut(s) 645, 1491
SmoI CTYRAG 2 cut(s) 645, 1491
SphI GCATGC 1 cut(s) 1257
Sse9I AATT 5 cut(s) 7, 258, 694, 811, 1311
SsiI CCGC 5 cut(s) 76, 275, 281, 584, 1190
SspMI CTAG 5 cut(s) 324, 1194, 1278, 1392, 1652
StyD4I CCNGG 1 cut(s) 939
StyI CCWWGG 2 cut(s) 960, 1357
TaaI ACNGT 2 cut(s) 1327, 1533
TaiI ACGT 2 cut(s) 353, 867
TaqI TCGA 2 cut(s) 441, 646
TasI AATT 5 cut(s) 7, 258, 694, 811, 1311
TatI WGTACW 2 cut(s) 842, 976
TauI GCSGC 1 cut(s) 1193
TfiI GAWTC 4 cut(s) 659, 944, 970, 1484
Tru1I TTAA 4 cut(s) 36, 681, 777, 1711
Tru9I TTAA 4 cut(s) 36, 681, 777, 1711
TscAI CASTG 5 cut(s) 423, 460, 542, 633, 1330
TseFI GTSAC 1 cut(s) 667
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 8 cut(s) 510, 672, 807, 924, 944, 1041, 1301, 1422
TspRI CASTG 5 cut(s) 423, 460, 542, 633, 1330
Van91I CCANNNNNTGG 2 cut(s) 830, 1212
VpaK11BI GGWCC 3 cut(s) 434, 1522, 1648
XagI CCTNNNNNAGG 1 cut(s) 856
XapI RAATTY 1 cut(s) 694
XceI RCATGY 2 cut(s) 359, 1257
XhoI CTCGAG 1 cut(s) 645
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 5 cut(s) 324, 1194, 1278, 1392, 1652
ZrmI AGTACT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.