Rh4BG414800
MYB Family

Protein LHY-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001426
Physical Location & Seq
Forward (+)
56239897 .. 56240238
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG414800.1

Sequence Viewer

Length: 342 bp
ATGTTTCGGATTTTAATTGTTATTAAAAATCCGGGGCGTGACAAAAATAGTGGTGAGAAAGACGGAAGATCTCTAATGTTAGACCTGAACAGCAAGGCCTGGGCACCATTTTGTCACCCAGAAGTGGAGAAAATTGCATCACCACCAGGAGGGCTCAACGGTGCAGGGGGGCTGTTGACATTAGGCCTGGGATATGGAAAGCTAAAGGCTCGTCGAACAGGATTCAAGCCTTACAAAAGGTGCTCTGTAGAGGCCAATGAGAACAGGGTGGCAAATGCCAGCAGCCATTGTGAAGAGAAAGGTCCCAAGAGGCTTCGCTTGGAAGGGGAAGCTTCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0042754 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043393 GO:0043433 GO:0043496 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051098 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

113

Amino Acids

12.26

Weight (kDa)

9.72

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 124, 149
AgsI TTSAA 2 cut(s) 226, 336
AjnI CCWGG 3 cut(s) 98, 145, 186
AluBI AGCT 2 cut(s) 202, 332
AluI AGCT 2 cut(s) 202, 332
Alw21I GWGCWC 1 cut(s) 245
AoxI GGCC 3 cut(s) 96, 184, 252
ApeKI GCWGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 3 cut(s) 65, 107, 132
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 294
BciT130I CCWGG 3 cut(s) 100, 147, 188
BcnI CCSGG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 246
BglII AGATCT 1 cut(s) 68
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 4 cut(s) 33, 100, 147, 188
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 105, 304
BmrFI CCNGG 4 cut(s) 33, 100, 147, 188
BmsI GCATC 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 32, 99, 187
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 149
BseBI CCWGG 3 cut(s) 100, 147, 188
BseDI CCNNGG 3 cut(s) 32, 99, 187
BseLI CCNNNNNNNGG 2 cut(s) 124, 149
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 3 cut(s) 98, 186, 254
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 2 cut(s) 124, 149
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 3 cut(s) 98, 186, 254
Bsp1286I GDGCHC 3 cut(s) 106, 156, 245
Bsp143I GATC 1 cut(s) 68
BspANI GGCC 3 cut(s) 98, 186, 254
BspLI GGNNCC 2 cut(s) 105, 304
BspT107I GGYRCC 1 cut(s) 103
BssECI CCNNGG 3 cut(s) 32, 99, 187
BssMI GATC 1 cut(s) 68
Bst2UI CCWGG 3 cut(s) 100, 147, 188
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 280
BstKTI GATC 1 cut(s) 71
BstMBI GATC 1 cut(s) 68
BstNI CCWGG 3 cut(s) 100, 147, 188
BstSCI CCNGG 4 cut(s) 31, 98, 145, 186
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 3 cut(s) 98, 186, 254
Cac8I GCNNGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 302
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco147I AGGCCT 2 cut(s) 98, 186
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 3 cut(s) 98, 145, 186
EcoT38I GRGCYC 1 cut(s) 156
FaiI YATR 1 cut(s) 195
FaqI GGGAC 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 283
GluI GCNGC 1 cut(s) 283
HaeIII GGCC 3 cut(s) 98, 186, 254
HapII CCGG 1 cut(s) 32
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 65, 107, 132
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 137, 164
Kzo9I GATC 1 cut(s) 68
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 146
MaeIII GTNAC 2 cut(s) 38, 113
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 2 cut(s) 78, 305
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 3 cut(s) 106, 156, 245
MluCI AATT 2 cut(s) 15, 132
MnlI CCTC 3 cut(s) 143, 244, 303
MseI TTAA 2 cut(s) 14, 24
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 4 cut(s) 33, 100, 147, 188
MvaI CCWGG 3 cut(s) 100, 147, 188
NciI CCSGG 1 cut(s) 33
NdeII GATC 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 105, 304
NmuCI GTSAC 2 cut(s) 38, 113
PceI AGGCCT 2 cut(s) 98, 186
PfeI GAWTC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 284
PpuMI RGGWCCY 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 3 cut(s) 98, 145, 186
PspGI CCWGG 3 cut(s) 98, 145, 186
PspN4I GGNNCC 2 cut(s) 105, 304
PspPI GGNCC 1 cut(s) 302
PspPPI RGGWCCY 1 cut(s) 302
PsuI RGATCY 1 cut(s) 68
SaqAI TTAA 2 cut(s) 14, 24
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 302
ScrFI CCNGG 4 cut(s) 33, 100, 147, 188
SduI GDGCHC 3 cut(s) 106, 156, 245
SetI ASST 5 cut(s) 87, 204, 242, 304, 334
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 302
Sse9I AATT 2 cut(s) 15, 132
SseBI AGGCCT 2 cut(s) 98, 186
StuI AGGCCT 2 cut(s) 98, 186
StyD4I CCNGG 4 cut(s) 31, 98, 145, 186
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 214
TasI AATT 2 cut(s) 15, 132
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 2 cut(s) 14, 24
Tru9I TTAA 2 cut(s) 14, 24
TseFI GTSAC 2 cut(s) 38, 113
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 2 cut(s) 38, 113
TspGWI ACGGA 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.