Rh1DG293100
MYB Family

Protein LHY-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001426
Physical Location & Seq
Forward (+)
51778624 .. 51787049
8426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG293100.1

Sequence Viewer

Length: 1719 bp
ATGGACAATTTCTCATCTGGGGAAGATTTGATCGTTAAGGCAAGAAAGCCATATACTATTACCAAGCAGCGAGAGCGGTGGACTGAGGAGGAGCATAATAGGTTTCTTGAAGCCTTGAAGCTCTATGGGCGAGCATGGCAGCGCATTGAAGAACATATAGGAACAAAGACTGCTGTGCAGATCCGAAGTCATGCACAGAAGTTCTTTTCAAAGCTGGAGAAGGAGGCAGTCAGTAAAGGTGTTCCTGTAGGACAATCAATTGACATAGATATTCCGCCTCCGCGCCCTAAAAGGAAACCAAGCAATCCTTATCCTCGGAAGTCTAGTGAAGCTGCTCCAACATGGTCCACGTCGCATGTCGGAGCAAAGGATGGAAAACTTGTGTCATCAGCTTCTTCTTCACATTGTAAACCAGCAGTGGACTTGGAGAAAGGACCACTCGATGAGAGATCCAGTGGAGAAGAAAAGCCAAGTTATGGAAAAGAAAACAAAGATGAAAGTTGCTCAGAAGTCTTCACCTTACTCTCAGAGTCTCACTGCTCCTCTGTGTCTTCTGCAAACAAAAGTTCCATACCTGCACAGGCGGTACTCAGAAATGCTTGCACTTTTAGAGAGTTTGTGCCTTCAGTGAAAAAGGTAATCCCTCGAGATGGCAATGAATCATATGTCACTATTGAACTTAAAGGAAATGAGAATTTGAAGAAAACTGATGCCAAAAAGATAGTTCAAGATAATGCCACAAGTGAAGCCTCAAAGTTGGAGAACACTAATGCTTTTAAGTTGGTTCAAGATGAGAAAGCAGATGATTTGAATTGTTCATTGCCAACAGATGGGATGCGAAGTACTCCGACCTGCCCGAGGAACGTTCCTATACACATACTGGATGGGAGCGTAGGAGAATGTAATCAAACTACAACCCCAGATTTGTCATTTTCATTCCAGGATTCTGTATTTCATCCTATGGGAAAGATTCGTGTACAGTCTAACCTGTTTACAAATCCAGCTGCATCTACTACTACTACTGAACATGAAAGTAATGTATCAAGATCTTGTATTGACCAATCATTTCCAGCTATTCCACCTCCATTTACCCCATTCCACCACAATCAAGAGGACTACCACTCATCTCTTTCCTCCACATTTTCAAGTCTTATTGTGTCTTCTCTGCTACAAAACCCTGCAGCCCATGCTGCGGCTAACTTTGCAGCCACATTCTGGCCTTACACGAATGCGGAGAACAAGGAAGGTTCTCCTGCATGCTCTGCCGGAGGTTTTCCATCTAGCCAAATGAACTCCCCTCCAAATATGGCAGCAATTGCTGCTGCCACTGTAGCTGCAGCAACTGCATGGTGGGCAGCCCATGGATTGCTCCCCTTGTGCGCTCCTCTTCAAACTAGCTTTAGCTGTCCTGTGCCCGTGCCCATGACTGGAGTTTCATCAATGGACAATGATCAAGCTCCTGCAGCCGAGACAGAGAAAGGACAGGATTCTCTTCAAGTTCCTTGCTTGCAGGATCAACTGCAGGACCCAGAACAGTCAGAAGCTGTGCAAGCACAACATTCACCTCCAAAATCACCAACCACAACCTCATCAGACTCTGAAAATGGAGGTGCAAAGCCTGATATTGGATCAAAAGCTGAGGATAATGAGAAGGACCTAGCAACAACTGAAGTTCAAGATTTGAACAAAGCAAAGAGCAAAAAACAGGTTTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0042754 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043393 GO:0043433 GO:0043496 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051098 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

572

Amino Acids

61.97

Weight (kDa)

5.82

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 24 - 67 1.8e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 583, 860
AccB7I CCANNNNNTGG 3 cut(s) 476, 830, 1215
AccBSI CCGCTC 1 cut(s) 76
AccII CGCG 1 cut(s) 283
AciI CCGC 6 cut(s) 76, 275, 281, 584, 1193, 1232
AclI AACGTT 1 cut(s) 864
AclWI GGATC 4 cut(s) 175, 444, 1521, 1636
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 2 cut(s) 609, 1689
AfaI GTAC 3 cut(s) 588, 844, 978
AfiI CCNNNNNNNGG 8 cut(s) 476, 650, 830, 858, 1192, 1215, 1427, 1625
AjiI CACGTC 1 cut(s) 351
AjnI CCWGG 1 cut(s) 939
Alw26I GTCTC 2 cut(s) 537, 1463
AlwI GGATC 4 cut(s) 175, 444, 1521, 1636
AlwNI CAGNNNCTG 3 cut(s) 1343, 1544, 1598
Ama87I CYCGRG 2 cut(s) 645, 856
AoxI GGCC 1 cut(s) 1217
ApoI RAATTY 1 cut(s) 694
AspLEI GCGC 3 cut(s) 144, 285, 1382
AspS9I GGNCC 4 cut(s) 345, 434, 1525, 1654
AsuHPI GGTGA 3 cut(s) 508, 1554, 1566
AvaI CYCGRG 2 cut(s) 645, 856
AvaII GGWCC 4 cut(s) 345, 434, 1525, 1654
BaeGI GKGCMC 2 cut(s) 1416, 1422
BbsI GAAGAC 3 cut(s) 505, 543, 1152
BbvCI CCTCAGC 1 cut(s) 1638
BccI CCATC 5 cut(s) 365, 644, 824, 878, 1285
BciT130I CCWGG 1 cut(s) 941
BclI TGATCA 1 cut(s) 1450
BcoDI GTCTC 2 cut(s) 537, 1463
BfaI CTAG 4 cut(s) 324, 1281, 1395, 1658
BfmI CTRYAG 6 cut(s) 246, 1179, 1329, 1335, 1461, 1520
BfuAI ACCTGC 2 cut(s) 583, 860
BglII AGATCT 1 cut(s) 1046
BmcAI AGTACT 1 cut(s) 844
Bme1390I CCNGG 1 cut(s) 941
Bme18I GGWCC 4 cut(s) 345, 434, 1525, 1654
BmeT110I CYCGRG 2 cut(s) 645, 856
BmgBI CACGTC 1 cut(s) 351
BmgT120I GGNCC 4 cut(s) 345, 434, 1525, 1654
BmiI GGNNCC 1 cut(s) 1527
BmrFI CCNGG 1 cut(s) 941
BmsI GCATC 3 cut(s) 700, 825, 1016
BpiI GAAGAC 3 cut(s) 505, 543, 1152
BpmI CTGGAG 2 cut(s) 236, 1449
Bpu10I CCTNAGC 1 cut(s) 1638
BsaJI CCNNGG 3 cut(s) 314, 857, 1360
Bsc4I CCNNNNNNNGG 8 cut(s) 476, 650, 830, 858, 1192, 1215, 1427, 1625
Bse1I ACTGG 3 cut(s) 453, 885, 1432
Bse3DI GCAATG 2 cut(s) 661, 818
BseBI CCWGG 1 cut(s) 941
BseDI CCNNGG 3 cut(s) 314, 857, 1360
BseGI GGATG 4 cut(s) 376, 840, 889, 955
BseLI CCNNNNNNNGG 8 cut(s) 476, 650, 830, 858, 1192, 1215, 1427, 1625
BseMI GCAATG 2 cut(s) 661, 818
BseMII CTCAG 5 cut(s) 75, 519, 540, 604, 1629
BseNI ACTGG 3 cut(s) 453, 885, 1432
BseRI GAGGAG 4 cut(s) 101, 104, 532, 1374
BseSI GKGCMC 2 cut(s) 1416, 1422
BsgI GTGCAG 2 cut(s) 197, 561
Bsh1236I CGCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 1219
BsiHKCI CYCGRG 2 cut(s) 645, 856
BsiSI CCGG 1 cut(s) 1266
BslI CCNNNNNNNGG 8 cut(s) 476, 650, 830, 858, 1192, 1215, 1427, 1625
BsmAI GTCTC 2 cut(s) 537, 1463
BsmI GAATGC 1 cut(s) 1234
BsnI GGCC 1 cut(s) 1219
BsoBI CYCGRG 2 cut(s) 645, 856
Bsp1286I GDGCHC 2 cut(s) 1416, 1422
Bsp1407I TGTACA 1 cut(s) 976
Bsp143I GATC 7 cut(s) 30, 180, 449, 1046, 1450, 1513, 1628
Bsp19I CCATGG 1 cut(s) 1360
BspACI CCGC 6 cut(s) 76, 275, 281, 584, 1193, 1232
BspANI GGCC 1 cut(s) 1219
BspCNI CTCAG 5 cut(s) 76, 518, 539, 603, 1630
BspFNI CGCG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 1527
BspMAI CTGCAG 4 cut(s) 1183, 1339, 1465, 1524
BspMI ACCTGC 2 cut(s) 583, 860
BspPI GGATC 4 cut(s) 175, 444, 1521, 1636
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 2 cut(s) 661, 818
BsrGI TGTACA 1 cut(s) 976
BsrI ACTGG 3 cut(s) 453, 885, 1432
BssECI CCNNGG 3 cut(s) 314, 857, 1360
BssMI GATC 7 cut(s) 30, 180, 449, 1046, 1450, 1513, 1628
BssT1I CCWWGG 1 cut(s) 1360
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 3 cut(s) 981, 1330, 1536
Bst6I CTCTTC 2 cut(s) 1392, 1497
BstAPI GCANNNNNTGC 5 cut(s) 1187, 1262, 1316, 1319, 1343
BstAUI TGTACA 1 cut(s) 976
BstC8I GCNNGC 5 cut(s) 132, 601, 1258, 1508, 1551
BstDEI CTNAG 5 cut(s) 84, 505, 526, 590, 1638
BstDSI CCRYGG 1 cut(s) 1360
BstENI CCTNNNNNAGG 1 cut(s) 856
BstF5I GGATG 4 cut(s) 376, 840, 889, 955
BstFNI CGCG 1 cut(s) 283
BstHHI GCGC 3 cut(s) 144, 285, 1382
BstKTI GATC 7 cut(s) 33, 183, 452, 1049, 1453, 1516, 1631
BstMAI GTCTC 2 cut(s) 537, 1463
BstMBI GATC 7 cut(s) 30, 180, 449, 1046, 1450, 1513, 1628
BstNI CCWGG 1 cut(s) 941
BstNSI RCATGY 2 cut(s) 359, 1260
BstSCI CCNGG 1 cut(s) 939
BstSFI CTRYAG 6 cut(s) 246, 1179, 1329, 1335, 1461, 1520
BstSLI GKGCMC 2 cut(s) 1416, 1422
BstUI CGCG 1 cut(s) 283
BstV2I GAAGAC 3 cut(s) 505, 543, 1152
BstX2I RGATCY 3 cut(s) 180, 449, 1046
BstYI RGATCY 3 cut(s) 180, 449, 1046
BsuRI GGCC 1 cut(s) 1219
BtgI CCRYGG 1 cut(s) 1360
BtrI CACGTC 1 cut(s) 351
BtsCI GGATG 4 cut(s) 376, 840, 889, 955
BtsI GCAGTG 2 cut(s) 423, 535
BtsIMutI CAGTG 5 cut(s) 423, 460, 535, 633, 1326
BveI ACCTGC 2 cut(s) 583, 860
Cac8I GCNNGC 5 cut(s) 132, 601, 1258, 1508, 1551
CaiI CAGNNNCTG 3 cut(s) 1343, 1544, 1598
CfoI GCGC 3 cut(s) 144, 285, 1382
Cfr13I GGNCC 4 cut(s) 345, 434, 1525, 1654
Csp6I GTAC 3 cut(s) 587, 843, 977
CviQI GTAC 3 cut(s) 587, 843, 977
DdeI CTNAG 5 cut(s) 84, 505, 526, 590, 1638
DpnI GATC 7 cut(s) 32, 182, 451, 1048, 1452, 1515, 1630
DpnII GATC 7 cut(s) 30, 180, 449, 1046, 1450, 1513, 1628
Eam1104I CTCTTC 2 cut(s) 1392, 1497
EarI CTCTTC 2 cut(s) 1392, 1497
EciI GGCGGA 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 1360
Eco47I GGWCC 4 cut(s) 345, 434, 1525, 1654
Eco57I CTGAAG 2 cut(s) 609, 1689
Eco88I CYCGRG 2 cut(s) 645, 856
EcoNI CCTNNNNNAGG 1 cut(s) 856
EcoO109I RGGNCCY 2 cut(s) 1525, 1654
EcoRII CCWGG 1 cut(s) 939
EcoT14I CCWWGG 1 cut(s) 1360
ErhI CCWWGG 1 cut(s) 1360
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FauNDI CATATG 1 cut(s) 664
FbaI TGATCA 1 cut(s) 1450
FokI GGATG 4 cut(s) 383, 847, 896, 942
FspBI CTAG 4 cut(s) 324, 1281, 1395, 1658
GlaI GCGC 3 cut(s) 143, 284, 1381
GsuI CTGGAG 2 cut(s) 236, 1449
HaeIII GGCC 1 cut(s) 1219
HapII CCGG 1 cut(s) 1266
HhaI GCGC 3 cut(s) 144, 285, 1382
Hin6I GCGC 3 cut(s) 142, 283, 1380
HinP1I GCGC 3 cut(s) 142, 283, 1380
HinfI GANTC 6 cut(s) 530, 659, 944, 970, 1487, 1595
HpaII CCGG 1 cut(s) 1266
HphI GGTGA 3 cut(s) 508, 1554, 1566
Hpy166II GTNNAC 6 cut(s) 81, 348, 410, 421, 977, 993
Hpy188III TCNNGA 7 cut(s) 107, 647, 728, 788, 1044, 1109, 1676
Hpy8I GTNNAC 6 cut(s) 81, 348, 410, 421, 977, 993
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 4 cut(s) 214, 633, 1238, 1645
HpyCH4III ACNGT 3 cut(s) 981, 1330, 1536
HpyCH4IV ACGT 2 cut(s) 350, 864
HpyF3I CTNAG 5 cut(s) 84, 505, 526, 590, 1638
HpySE526I ACGT 2 cut(s) 350, 864
HspAI GCGC 3 cut(s) 142, 283, 1380
Ksp22I TGATCA 1 cut(s) 1450
Kzo9I GATC 7 cut(s) 30, 180, 449, 1046, 1450, 1513, 1628
LmnI GCTCC 8 cut(s) 91, 340, 362, 545, 888, 1374, 1387, 1462
LweI GCATC 3 cut(s) 700, 825, 1016
MaeI CTAG 4 cut(s) 324, 1281, 1395, 1658
MaeII ACGT 2 cut(s) 350, 864
MaeIII GTNAC 1 cut(s) 667
MalI GATC 7 cut(s) 32, 182, 451, 1048, 1452, 1515, 1630
MbiI CCGCTC 1 cut(s) 76
MboI GATC 7 cut(s) 30, 180, 449, 1046, 1450, 1513, 1628
MfeI CAATTG 2 cut(s) 258, 1314
MflI RGATCY 3 cut(s) 180, 449, 1046
MhlI GDGCHC 2 cut(s) 1416, 1422
MluCI AATT 5 cut(s) 7, 258, 694, 811, 1314
MlyI GAGTC 2 cut(s) 539, 1589
MmeI TCCRAC 4 cut(s) 340, 362, 738, 872
MseI TTAA 4 cut(s) 36, 681, 777, 1717
MspA1I CMGCKG 1 cut(s) 1004
MspI CCGG 1 cut(s) 1266
MspR9I CCNGG 1 cut(s) 941
MunI CAATTG 2 cut(s) 258, 1314
Mva1269I GAATGC 1 cut(s) 1234
MvaI CCWGG 1 cut(s) 941
MvnI CGCG 1 cut(s) 283
NcoI CCATGG 1 cut(s) 1360
NdeI CATATG 1 cut(s) 664
NdeII GATC 7 cut(s) 30, 180, 449, 1046, 1450, 1513, 1628
NlaIV GGNNCC 1 cut(s) 1527
NmeAIII GCCGAG 1 cut(s) 1492
NmuCI GTSAC 1 cut(s) 667
NspI RCATGY 2 cut(s) 359, 1260
PaeI GCATGC 1 cut(s) 1260
PaeR7I CTCGAG 1 cut(s) 645
PctI GAATGC 1 cut(s) 1234
PfeI GAWTC 4 cut(s) 659, 944, 970, 1487
PflMI CCANNNNNTGG 3 cut(s) 476, 830, 1215
PfoI TCCNGGA 1 cut(s) 939
PleI GAGTC 2 cut(s) 538, 1589
PpsI GAGTC 2 cut(s) 538, 1589
PpuMI RGGWCCY 2 cut(s) 1525, 1654
Psp1406I AACGTT 1 cut(s) 864
Psp5II RGGWCCY 2 cut(s) 1525, 1654
Psp6I CCWGG 1 cut(s) 939
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 1 cut(s) 1527
PspPI GGNCC 4 cut(s) 345, 434, 1525, 1654
PspPPI RGGWCCY 2 cut(s) 1525, 1654
PstI CTGCAG 4 cut(s) 1183, 1339, 1465, 1524
PstNI CAGNNNCTG 3 cut(s) 1343, 1544, 1598
PsuI RGATCY 3 cut(s) 180, 449, 1046
PvuII CAGCTG 1 cut(s) 1004
RsaI GTAC 3 cut(s) 588, 844, 978
RsaNI GTAC 3 cut(s) 587, 843, 977
SaqAI TTAA 4 cut(s) 36, 681, 777, 1717
Sau3AI GATC 7 cut(s) 30, 180, 449, 1046, 1450, 1513, 1628
Sau96I GGNCC 4 cut(s) 345, 434, 1525, 1654
ScaI AGTACT 1 cut(s) 844
SchI GAGTC 2 cut(s) 539, 1589
ScrFI CCNGG 1 cut(s) 941
SduI GDGCHC 2 cut(s) 1416, 1422
SfaNI GCATC 3 cut(s) 700, 825, 1016
SfcI CTRYAG 6 cut(s) 246, 1179, 1329, 1335, 1461, 1520
Sfr274I CTCGAG 1 cut(s) 645
SinI GGWCC 4 cut(s) 345, 434, 1525, 1654
SlaI CTCGAG 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
SphI GCATGC 1 cut(s) 1260
Sse9I AATT 5 cut(s) 7, 258, 694, 811, 1314
SsiI CCGC 6 cut(s) 76, 275, 281, 584, 1193, 1232
SspMI CTAG 4 cut(s) 324, 1281, 1395, 1658
StyD4I CCNGG 1 cut(s) 939
StyI CCWWGG 1 cut(s) 1360
TaaI ACNGT 3 cut(s) 981, 1330, 1536
TaiI ACGT 2 cut(s) 353, 867
TaqI TCGA 2 cut(s) 441, 646
TasI AATT 5 cut(s) 7, 258, 694, 811, 1314
TatI WGTACW 2 cut(s) 842, 976
TauI GCSGC 1 cut(s) 1196
TfiI GAWTC 4 cut(s) 659, 944, 970, 1487
Tru1I TTAA 4 cut(s) 36, 681, 777, 1717
Tru9I TTAA 4 cut(s) 36, 681, 777, 1717
TscAI CASTG 5 cut(s) 423, 460, 542, 633, 1333
TseFI GTSAC 1 cut(s) 667
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 8 cut(s) 510, 672, 807, 924, 944, 1044, 1304, 1425
TspRI CASTG 5 cut(s) 423, 460, 542, 633, 1333
Van91I CCANNNNNTGG 3 cut(s) 476, 830, 1215
VpaK11BI GGWCC 4 cut(s) 345, 434, 1525, 1654
XagI CCTNNNNNAGG 1 cut(s) 856
XapI RAATTY 1 cut(s) 694
XceI RCATGY 2 cut(s) 359, 1260
XhoI CTCGAG 1 cut(s) 645
XspI CTAG 4 cut(s) 324, 1281, 1395, 1658
ZrmI AGTACT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.