Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016007

Physical Location & Seq

Genomic Coordinates Reverse (-)

104440 .. 105330

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCACCACAGAGAATGAAGCTATCATCACCACCAGTTACCAACAACGAACCAACCGCCACCGCTTCTGCCGTTAAATCTTGCGGCGGAGGAGGTAAAGAAACCAGCTCATCGACCACGAGGCATCCAGTGTACCACGGAGTTCGCAAACGCCGATGGGGAAAATGGGTTTCTGAGATCAGAGAGCCCCGGAAAAAGTCTCGGATTTGGCTCGGATCTTTTCCGGTGCCGGAGATGGCTGCTAAGGCCTACGACGTGGCAGCGTTTTGTCTAAAAGGTAGAAAAGCTCAGCTGAATTTCCCTGAAGAAATCGAGGATCTACCTCGACCGTCCACGTGTACTCCCAGAGATATCCAAGTCGCAGCGGCCAAAGCAGCCAACGCCGTGAAGATCATCAAAATGGGAGATGATGACGTGGCAGGAATAGACGACGGAGATGATTTCTGGGAAGGCATTGAGCTGCCTGAGCTTATGATGAGTGGAGGTGGGTGGTCGCCGGAGCCTTTTGTTGCCGGAGATGATGCCACGTGGCTTGTCGACGGAGACTTGTATCAGTATCAGTTCATGGCGTGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

192

Amino Acids

21.05

Weight (kDa)

5.77

Isoelectric Point (pI)

68.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 93	3.3e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01250
fragaria_vesca	FvH4_7g16810
malus_domestica	MD01G1083000.v1.1 MD07G1151700.v1.1
prunus_persica	Prupe.2G190200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360021
rosa_laevigata	RLG00000027838
rosa_multiflora	Rmu_ssc0000368.1_g000032
rosa_roxburghii	Rroxscaffold_4G00296450
rosa_rugosa	Rorug01G0274600
rosa_samantha	Rh1AG288400 Rh1BG253900 Rh1CG271400 Rh1DG283000
rosa_wichuraiana	Rw1G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	5 cut(s)	57, 63, 84, 87, 365
AclWI	GGATC	2 cut(s)	223, 324
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	324
AcvI	CACGTG	2 cut(s)	336, 528
AfaI	GTAC	2 cut(s)	134, 340
AflIII	ACRYGT	1 cut(s)	335
AjiI	CACGTC	2 cut(s)	256, 415
AluBI	AGCT	6 cut(s)	22, 108, 287, 292, 460, 469
AluI	AGCT	6 cut(s)	22, 108, 287, 292, 460, 469
Alw26I	GTCTC	2 cut(s)	204, 537
AlwI	GGATC	2 cut(s)	223, 324
AoxI	GGCC	2 cut(s)	246, 366
ApeKI	GCWGC	5 cut(s)	239, 260, 362, 374, 460
ApoI	RAATTY	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	118
BbrPI	CACGTG	2 cut(s)	336, 528
BbvI	GCAGC	5 cut(s)	226, 272, 374, 386, 447
BccI	CCATC	2 cut(s)	150, 229
BceAI	ACGGC	2 cut(s)	56, 368
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	204, 537
BisI	GCNGC	7 cut(s)	85, 240, 261, 363, 366, 375, 461
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	7 cut(s)	86, 241, 262, 364, 367, 376, 462
Bme1390I	CCNGG	1 cut(s)	190
BmgBI	CACGTC	2 cut(s)	256, 415
BmiI	GGNNCC	2 cut(s)	228, 501
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	133, 511
Bpu10I	CCTNAGC	2 cut(s)	243, 465
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	190
BsaAI	YACGTR	2 cut(s)	336, 528
BsaJI	CCNNGG	2 cut(s)	136, 188
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bse1I	ACTGG	2 cut(s)	35, 128
BseDI	CCNNGG	2 cut(s)	136, 188
BseGI	GGATG	1 cut(s)	124
BseMII	CTCAG	3 cut(s)	165, 302, 456
BseNI	ACTGG	2 cut(s)	35, 128
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	5 cut(s)	226, 272, 374, 386, 447
Bsh1285I	CGRYCG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	248, 368
BshNI	GGYRCC	1 cut(s)	226
BsiEI	CGRYCG	1 cut(s)	329
BsiSI	CCGG	5 cut(s)	190, 224, 230, 497, 513
BsmAI	GTCTC	2 cut(s)	204, 537
BsnI	GGCC	2 cut(s)	248, 368
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	4 cut(s)	177, 215, 316, 390
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	5 cut(s)	57, 63, 84, 87, 365
BspANI	GGCC	2 cut(s)	248, 368
BspCNI	CTCAG	3 cut(s)	166, 301, 457
BspLI	GGNNCC	2 cut(s)	228, 501
BspPI	GGATC	2 cut(s)	223, 324
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	35, 128
BssECI	CCNNGG	2 cut(s)	136, 188
BssMI	GATC	4 cut(s)	177, 215, 316, 390
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	330
BstBAI	YACGTR	2 cut(s)	336, 528
BstDEI	CTNAG	4 cut(s)	174, 243, 288, 465
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	4 cut(s)	180, 218, 319, 393
BstMAI	GTCTC	2 cut(s)	204, 537
BstMBI	GATC	4 cut(s)	177, 215, 316, 390
BstMCI	CGRYCG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 371, 374, 380, 466
BstSCI	CCNGG	1 cut(s)	188
BstV1I	GCAGC	5 cut(s)	226, 272, 374, 386, 447
BstX2I	RGATCY	2 cut(s)	215, 316
BstYI	RGATCY	2 cut(s)	215, 316
BsuRI	GGCC	2 cut(s)	248, 368
BtgI	CCRYGG	1 cut(s)	136
BtrI	CACGTC	2 cut(s)	256, 415
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	133, 339
CspCI	CAANNNNNGTGG	2 cut(s)	514, 549
CviAII	CATG	1 cut(s)	565
CviQI	GTAC	2 cut(s)	133, 339
DdeI	CTNAG	4 cut(s)	174, 243, 288, 465
DpnI	GATC	4 cut(s)	179, 217, 318, 392
DpnII	GATC	4 cut(s)	177, 215, 316, 390
EaeI	YGGCCR	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	324
Eco72I	CACGTG	2 cut(s)	336, 528
EcoRV	GATATC	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	1 cut(s)	568
FaiI	YATR	2 cut(s)	473, 566
FatI	CATG	1 cut(s)	564
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	7 cut(s)	85, 240, 261, 363, 366, 375, 461
FokI	GGATG	1 cut(s)	111
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	7 cut(s)	85, 240, 261, 363, 366, 375, 461
GluI	GCNGC	7 cut(s)	85, 240, 261, 363, 366, 375, 461
HaeIII	GGCC	2 cut(s)	248, 368
HapII	CCGG	5 cut(s)	190, 224, 230, 497, 513
Hin1II	CATG	1 cut(s)	568
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HpaII	CCGG	5 cut(s)	190, 224, 230, 497, 513
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	4 cut(s)	133, 333, 339, 538
Hpy188I	TCNGA	4 cut(s)	175, 182, 204, 215
Hpy8I	GTNNAC	4 cut(s)	133, 333, 339, 538
Hpy99I	CGWCG	3 cut(s)	257, 434, 542
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	4 cut(s)	255, 335, 414, 527
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 371, 374, 380, 466
HpyF3I	CTNAG	4 cut(s)	174, 243, 288, 465
HpySE526I	ACGT	4 cut(s)	255, 335, 414, 527
Hsp92II	CATG	1 cut(s)	568
Kzo9I	GATC	4 cut(s)	177, 215, 316, 390
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	5 cut(s)	226, 272, 374, 386, 447
LweI	GCATC	2 cut(s)	133, 511
MaeII	ACGT	4 cut(s)	255, 335, 414, 527
MaeIII	GTNAC	2 cut(s)	3, 37
MalI	GATC	4 cut(s)	179, 217, 318, 392
MboI	GATC	4 cut(s)	177, 215, 316, 390
MboII	GAAGA	2 cut(s)	317, 400
MflI	RGATCY	2 cut(s)	215, 316
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	295
MnlI	CCTC	6 cut(s)	83, 86, 114, 307, 333, 476
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	292, 365
MspI	CCGG	5 cut(s)	190, 224, 230, 497, 513
MspR9I	CCNGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	5 cut(s)	245, 371, 374, 380, 466
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	4 cut(s)	177, 215, 316, 390
NlaIII	CATG	1 cut(s)	568
NlaIV	GGNNCC	2 cut(s)	228, 501
NmuCI	GTSAC	1 cut(s)	3
PceI	AGGCCT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PkrI	GCNGC	7 cut(s)	86, 241, 262, 364, 367, 376, 462
PmaCI	CACGTG	2 cut(s)	336, 528
PmlI	CACGTG	2 cut(s)	336, 528
Ppu21I	YACGTR	2 cut(s)	336, 528
PspCI	CACGTG	2 cut(s)	336, 528
PspN4I	GGNNCC	2 cut(s)	228, 501
PsuI	RGATCY	2 cut(s)	215, 316
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	2 cut(s)	134, 340
RsaNI	GTAC	2 cut(s)	133, 339
RseI	CAYNNNNRTG	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	7 cut(s)	85, 240, 261, 363, 366, 375, 461
Sau3AI	GATC	4 cut(s)	177, 215, 316, 390
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	133, 511
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	1 cut(s)	295
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	5 cut(s)	57, 63, 84, 87, 365
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	4 cut(s)	258, 338, 417, 530
TaqI	TCGA	4 cut(s)	113, 312, 325, 537
TasI	AATT	1 cut(s)	295
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	2 cut(s)	87, 368
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	239, 260, 362, 374, 460
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	32, 553
TspGWI	ACGGA	3 cut(s)	153, 447, 555
TspRI	CASTG	1 cut(s)	135
XapI	RAATTY	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.