Prupe.2G190200_v2.0.a1

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016007
Physical Location & Seq
Forward (+)
22952940 .. 22953685
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G190200.1

Sequence Viewer

Length: 609 bp
ATGGAGCAAACACCATACACTGAGGATGACCTGAGCACCACCTCCACCTCCACCAGAACCACTACCCAGAAATCTGACTCGCAACACGCCTCCACCCGCCACCCAGTCTACAGAGGCGTGCGGAAACGACGGTGGGGCAAATGGGTGTCTGAAATTAGGGAGCCACGAAAGAAATCACGCATTTGGCTAGGGTCTTTCCCTGTGCCTGAGATGGCAGCCAAGGCCTACGACGTCGCCGCCTACTGCTTGAAAGGCCAGAAAGCGCAGCTGAATTTCCCCGAAGACGTTGAGCACTTGCCTAGGCCCTCCACGTGTACGGCTAGGGACATTCAGGCAGCAGCAGCTCAAGCAGCACATACAATGAAGTCAAATAGTACTACTCCCAAGGAAAACGATCATCATCATCATCACCATGATCATGATCATGATGGATTGGACGGTGATGATGATTTTTGGGGTGAGATTGAGCTGCCTGAGCTGATGAATAGTGGGTGCCACTGGAATTCATCATGTGGTTGGAATACGACTGCGTTTTCAGGTGATGCAGCAGCATGGCCGGAAGGAGAGGCTCCACAACAATTTATGGGGATGGTGCTTGTCTCTGATTAA

Protein Analysis

203

Amino Acids

22.71

Weight (kDa)

5.87

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01250
fragaria_vesca FvH4_7g16810
malus_domestica MD01G1083000.v1.1 MD07G1151700.v1.1
prunus_persica Prupe.2G190200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0360021
rosa_laevigata RLG00000027838
rosa_multiflora Rmu_ssc0000368.1_g000032
rosa_roxburghii Rroxscaffold_4G00296450
rosa_rugosa Rorug01G0274600
rosa_samantha Rh1AG288400 Rh1BG253900 Rh1CG271400 Rh1DG283000
rosa_wichuraiana Rw1G025570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 492
AccI GTMKAC 1 cut(s) 108
AciI CCGC 3 cut(s) 97, 121, 237
AcoI YGGCCR 1 cut(s) 554
AcsI RAATTY 2 cut(s) 271, 502
AcvI CACGTG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 2 cut(s) 316, 376
AflIII ACRYGT 1 cut(s) 311
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 4 cut(s) 268, 344, 469, 478
AluI AGCT 4 cut(s) 268, 344, 469, 478
Alw21I GWGCWC 2 cut(s) 38, 294
Alw26I GTCTC 1 cut(s) 604
AoxI GGCC 4 cut(s) 222, 253, 302, 554
ApeKI GCWGC 9 cut(s) 215, 265, 335, 338, 341, 350, 469, 545, 548
ApoI RAATTY 2 cut(s) 271, 502
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 4 cut(s) 401, 452, 470, 551
AvrII CCTAGG 1 cut(s) 299
BanI GGYRCC 1 cut(s) 492
BbrPI CACGTG 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 2 cut(s) 38, 294
BbvI GCAGC 9 cut(s) 227, 277, 347, 350, 353, 362, 456, 557, 560
BccI CCATC 3 cut(s) 205, 422, 583
BceAI ACGGC 1 cut(s) 333
BclI TGATCA 2 cut(s) 415, 421
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 3 cut(s) 188, 300, 321
BfmI CTRYAG 1 cut(s) 109
BlnI CCTAGG 1 cut(s) 299
BmcAI AGTACT 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 3 cut(s) 162, 494, 570
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 532
BmuI ACTGGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 288
Bpu10I CCTNAGC 2 cut(s) 32, 474
BpuEI CTTGAG 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 312
BsaBI GATNNNNATC 2 cut(s) 399, 420
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 219, 299, 384
Bse1I ACTGG 2 cut(s) 104, 503
Bse8I GATNNNNATC 2 cut(s) 399, 420
BseDI CCNNGG 3 cut(s) 219, 299, 384
BseGI GGATG 2 cut(s) 31, 594
BseJI GATNNNNATC 2 cut(s) 399, 420
BseMII CTCAG 4 cut(s) 12, 23, 198, 465
BseNI ACTGG 2 cut(s) 104, 503
BseXI GCAGC 9 cut(s) 227, 277, 347, 350, 353, 362, 456, 557, 560
BshFI GGCC 4 cut(s) 224, 255, 304, 556
BshNI GGYRCC 1 cut(s) 492
BsiHKAI GWGCWC 2 cut(s) 38, 294
BsiSI CCGG 1 cut(s) 557
BslFI GGGAC 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 604
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 4 cut(s) 224, 255, 304, 556
Bsp1286I GDGCHC 2 cut(s) 38, 294
Bsp143I GATC 3 cut(s) 394, 415, 421
BspACI CCGC 3 cut(s) 97, 121, 237
BspANI GGCC 4 cut(s) 224, 255, 304, 556
BspCNI CTCAG 4 cut(s) 13, 24, 199, 466
BspHI TCATGA 2 cut(s) 418, 424
BspLI GGNNCC 3 cut(s) 162, 494, 570
BspT107I GGYRCC 1 cut(s) 492
BsrI ACTGG 2 cut(s) 104, 503
BssECI CCNNGG 3 cut(s) 219, 299, 384
BssMI GATC 3 cut(s) 394, 415, 421
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 3 cut(s) 219, 299, 384
Bst4CI ACNGT 2 cut(s) 132, 440
BstACI GRCGYC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 4 cut(s) 21, 32, 207, 474
BstF5I GGATG 2 cut(s) 31, 594
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 3 cut(s) 397, 418, 424
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 3 cut(s) 394, 415, 421
BstMWI GCNNNNNNNGC 6 cut(s) 221, 252, 341, 347, 350, 475
BstSFI CTRYAG 1 cut(s) 109
BstV1I GCAGC 9 cut(s) 227, 277, 347, 350, 353, 362, 456, 557, 560
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 4 cut(s) 224, 255, 304, 556
BtsCI GGATG 2 cut(s) 31, 594
BtsIMutI CAGTG 2 cut(s) 18, 496
Cac8I GCNNGC 1 cut(s) 119
CciI TCATGA 2 cut(s) 418, 424
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 303
Csp6I GTAC 2 cut(s) 315, 375
CviAII CATG 5 cut(s) 413, 419, 425, 510, 552
CviQI GTAC 2 cut(s) 315, 375
DdeI CTNAG 4 cut(s) 21, 32, 207, 474
DpnI GATC 3 cut(s) 396, 417, 423
DpnII GATC 3 cut(s) 394, 415, 421
EaeI YGGCCR 1 cut(s) 554
Eco130I CCWWGG 3 cut(s) 219, 299, 384
Eco147I AGGCCT 1 cut(s) 224
Eco72I CACGTG 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 502
EcoT14I CCWWGG 3 cut(s) 219, 299, 384
ErhI CCWWGG 3 cut(s) 219, 299, 384
FaeI CATG 5 cut(s) 416, 422, 428, 513, 555
FaiI YATR 8 cut(s) 16, 357, 414, 420, 426, 511, 553, 584
FaqI GGGAC 1 cut(s) 338
FatI CATG 5 cut(s) 412, 418, 424, 509, 551
FauI CCCGC 1 cut(s) 104
FbaI TGATCA 2 cut(s) 415, 421
FblI GTMKAC 1 cut(s) 108
FokI GGATG 2 cut(s) 38, 601
FspBI CTAG 3 cut(s) 188, 300, 321
GlaI GCGC 1 cut(s) 264
HaeIII GGCC 4 cut(s) 224, 255, 304, 556
HapII CCGG 1 cut(s) 557
HhaI GCGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 5 cut(s) 416, 422, 428, 513, 555
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 557
HphI GGTGA 4 cut(s) 401, 452, 470, 551
Hpy166II GTNNAC 2 cut(s) 109, 315
Hpy188I TCNGA 3 cut(s) 76, 151, 604
Hpy188III TCNNGA 2 cut(s) 419, 425
Hpy8I GTNNAC 2 cut(s) 109, 315
Hpy99I CGWCG 3 cut(s) 132, 233, 236
HpyAV CCTTC 1 cut(s) 554
HpyCH4III ACNGT 2 cut(s) 132, 440
HpyCH4IV ACGT 3 cut(s) 231, 285, 311
HpyCH4V TGCA 1 cut(s) 545
HpyF10VI GCNNNNNNNGC 6 cut(s) 221, 252, 341, 347, 350, 475
HpyF3I CTNAG 4 cut(s) 21, 32, 207, 474
HpySE526I ACGT 3 cut(s) 231, 285, 311
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 5 cut(s) 416, 422, 428, 513, 555
HspAI GCGC 1 cut(s) 263
Ksp22I TGATCA 2 cut(s) 415, 421
Kzo9I GATC 3 cut(s) 394, 415, 421
LmnI GCTCC 3 cut(s) 4, 160, 574
Lsp1109I GCAGC 9 cut(s) 227, 277, 347, 350, 353, 362, 456, 557, 560
LweI GCATC 1 cut(s) 532
MaeI CTAG 3 cut(s) 188, 300, 321
MaeII ACGT 3 cut(s) 231, 285, 311
MalI GATC 3 cut(s) 396, 417, 423
MboI GATC 3 cut(s) 394, 415, 421
MboII GAAGA 1 cut(s) 293
MhlI GDGCHC 2 cut(s) 38, 294
MluCI AATT 4 cut(s) 153, 271, 502, 578
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 7 cut(s) 16, 52, 58, 100, 107, 316, 559
MseI TTAA 1 cut(s) 607
MslI CAYNNNNRTG 3 cut(s) 411, 417, 423
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 1 cut(s) 557
MwoI GCNNNNNNNGC 6 cut(s) 221, 252, 341, 347, 350, 475
NdeII GATC 3 cut(s) 394, 415, 421
NlaIII CATG 5 cut(s) 416, 422, 428, 513, 555
NlaIV GGNNCC 3 cut(s) 162, 494, 570
PagI TCATGA 2 cut(s) 418, 424
PceI AGGCCT 1 cut(s) 224
PleI GAGTC 1 cut(s) 71
PmaCI CACGTG 1 cut(s) 312
PmlI CACGTG 1 cut(s) 312
PpsI GAGTC 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 312
PspCI CACGTG 1 cut(s) 312
PspN4I GGNNCC 3 cut(s) 162, 494, 570
PspPI GGNCC 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 2 cut(s) 316, 376
RsaNI GTAC 2 cut(s) 315, 375
RseI CAYNNNNRTG 3 cut(s) 411, 417, 423
SaqAI TTAA 1 cut(s) 607
Sau3AI GATC 3 cut(s) 394, 415, 421
Sau96I GGNCC 1 cut(s) 303
ScaI AGTACT 1 cut(s) 376
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 2 cut(s) 38, 294
SfaNI GCATC 1 cut(s) 532
SfcI CTRYAG 1 cut(s) 109
SmiMI CAYNNNNRTG 3 cut(s) 411, 417, 423
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 4 cut(s) 153, 271, 502, 578
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 3 cut(s) 97, 121, 237
SspMI CTAG 3 cut(s) 188, 300, 321
StuI AGGCCT 1 cut(s) 224
StyI CCWWGG 3 cut(s) 219, 299, 384
TaaI ACNGT 2 cut(s) 132, 440
TaiI ACGT 3 cut(s) 234, 288, 314
TasI AATT 4 cut(s) 153, 271, 502, 578
TatI WGTACW 1 cut(s) 374
TauI GCSGC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 607
Tru9I TTAA 1 cut(s) 607
TscAI CASTG 2 cut(s) 25, 503
TseI GCWGC 9 cut(s) 215, 265, 335, 338, 341, 350, 469, 545, 548
TspDTI ATGAA 3 cut(s) 377, 495, 497
TspRI CASTG 2 cut(s) 25, 503
XapI RAATTY 2 cut(s) 271, 502
XmaJI CCTAGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 3 cut(s) 188, 300, 321
ZraI GACGTC 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.