Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000368.1

Orthogroup ID

OG0016007

Physical Location & Seq

Genomic Coordinates Forward (+)

146224 .. 146829

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000368.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgacgctcccagctaatgctttcttgacgtacatggagcaaccaccagacactgaagatgacctgagcactcccaccaccaccactgccgcagccactattacccaaaaccacgaaaaccaacaacgcagcggcacccggcacccggtgtaccggggcgtgaggaagcggcggtggggaaaatgggtgtccgaaatcagggagccacgcaagaagtcacgcatttggctagggtccttcccggtccccgagatggcggccaaggcctatgacgtggcggcctactgcctcaaggggcgaaaagcgcagctgaacttccccgacgaggtggagcacttgccgaggccctccacgtgtacggctagggatattcaggcagcagcagctaaagcagcacagacagtgaagtcatcaagtacagctagaagcactgatcaggatcatcaccgtgatgtattggacggcggcggcgtcgatgatttttggggtgagattgagctaccggagctaatgaatagcggcacgtgctactcgaactcatgtgggtggagtacgtttaccggtgaaacagcattaacatggccagaaggagaggcatgtctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

201

Amino Acids

22.31

Weight (kDa)

5.97

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01250
fragaria_vesca	FvH4_7g16810
malus_domestica	MD01G1083000.v1.1 MD07G1151700.v1.1
prunus_persica	Prupe.2G190200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360021
rosa_laevigata	RLG00000027838
rosa_multiflora	Rmu_ssc0000368.1_g000032
rosa_roxburghii	Rroxscaffold_4G00296450
rosa_rugosa	Rorug01G0274600
rosa_samantha	Rh1AG288400 Rh1BG253900 Rh1CG271400 Rh1DG283000
rosa_wichuraiana	Rw1G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	406
AccB1I	GGYRCC	2 cut(s)	134, 141
AciI	CCGC	9 cut(s)	90, 132, 169, 172, 257, 278, 465, 468, 519
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	2 cut(s)	258, 581
AcuI	CTGAAG	1 cut(s)	75
AcvI	CACGTG	2 cut(s)	354, 525
AcyI	GRCGYC	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	148
AfaI	GTAC	5 cut(s)	32, 152, 358, 418, 553
AfiI	CCNNNNNNNGG	4 cut(s)	145, 198, 253, 325
AflIII	ACRYGT	1 cut(s)	353
AgeI	ACCGGT	1 cut(s)	560
AjiI	CACGTC	1 cut(s)	274
AluBI	AGCT	6 cut(s)	14, 310, 386, 422, 499, 508
AluI	AGCT	6 cut(s)	14, 310, 386, 422, 499, 508
Alw21I	GWGCWC	2 cut(s)	71, 336
AlwI	GGATC	1 cut(s)	447
AlwNI	CAGNNNCTG	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	5 cut(s)	258, 264, 279, 344, 581
ApeKI	GCWGC	7 cut(s)	92, 129, 307, 377, 380, 383, 392
AsiGI	ACCGGT	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	234, 244, 345
AsuC2I	CCSGG	4 cut(s)	139, 146, 155, 242
AsuHPI	GGTGA	3 cut(s)	437, 500, 575
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	234, 244
BalI	TGGCCA	1 cut(s)	583
BanI	GGYRCC	2 cut(s)	134, 141
BbrPI	CACGTG	2 cut(s)	354, 525
Bbv12I	GWGCWC	2 cut(s)	71, 336
BbvI	GCAGC	7 cut(s)	104, 141, 319, 389, 392, 395, 404
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	2 cut(s)	375, 478
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	4 cut(s)	139, 146, 155, 242
BfaI	CTAG	3 cut(s)	230, 363, 423
Bme1390I	CCNGG	4 cut(s)	139, 146, 155, 242
Bme18I	GGWCC	2 cut(s)	234, 244
BmeT110I	CYCGRG	1 cut(s)	248
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	234, 244, 345
BmiI	GGNNCC	5 cut(s)	136, 143, 204, 235, 246
BmrFI	CCNGG	4 cut(s)	139, 146, 155, 242
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	4 cut(s)	139, 146, 155, 242
BsaAI	YACGTR	2 cut(s)	354, 525
BsaBI	GATNNNNATC	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	154, 261, 341
BsaWI	WCCGGW	2 cut(s)	502, 560
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 198, 253, 325
Bse118I	RCCGGY	1 cut(s)	560
Bse8I	GATNNNNATC	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	154, 261, 341
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	4 cut(s)	145, 198, 253, 325
BseMII	CTCAG	1 cut(s)	56
BseXI	GCAGC	7 cut(s)	104, 141, 319, 389, 392, 395, 404
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	5 cut(s)	260, 266, 281, 346, 583
BshNI	GGYRCC	2 cut(s)	134, 141
BshTI	ACCGGT	1 cut(s)	560
BsiHKAI	GWGCWC	2 cut(s)	71, 336
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	6 cut(s)	139, 146, 154, 242, 503, 561
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	4 cut(s)	145, 198, 253, 325
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	5 cut(s)	260, 266, 281, 346, 583
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	71, 336
Bsp143I	GATC	2 cut(s)	433, 439
BspACI	CCGC	9 cut(s)	90, 132, 169, 172, 257, 278, 465, 468, 519
BspANI	GGCC	5 cut(s)	260, 266, 281, 346, 583
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	5 cut(s)	136, 143, 204, 235, 246
BspPI	GGATC	1 cut(s)	447
BspT107I	GGYRCC	2 cut(s)	134, 141
BsrFI	RCCGGY	1 cut(s)	560
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	3 cut(s)	154, 261, 341
BssMI	GATC	2 cut(s)	433, 439
BssNI	GRCGYC	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	403, 449
BstACI	GRCGYC	1 cut(s)	471
BstBAI	YACGTR	2 cut(s)	354, 525
BstDEI	CTNAG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	2 cut(s)	436, 442
BstMBI	GATC	2 cut(s)	433, 439
BstMWI	GCNNNNNNNGC	7 cut(s)	263, 304, 383, 389, 392, 505, 525
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	4 cut(s)	137, 144, 153, 240
BstV1I	GCAGC	7 cut(s)	104, 141, 319, 389, 392, 395, 404
BsuRI	GGCC	5 cut(s)	260, 266, 281, 346, 583
BtrI	CACGTC	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	4 cut(s)	51, 84, 408, 429
CaiI	CAGNNNCTG	1 cut(s)	53
CfoI	GCGC	1 cut(s)	307
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	3 cut(s)	234, 244, 345
CseI	GACGC	2 cut(s)	13, 460
Csp6I	GTAC	5 cut(s)	31, 151, 357, 417, 552
CspAI	ACCGGT	1 cut(s)	560
CviAII	CATG	4 cut(s)	34, 540, 579, 597
CviQI	GTAC	5 cut(s)	31, 151, 357, 417, 552
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	2 cut(s)	435, 441
DpnII	GATC	2 cut(s)	433, 439
DraIII	CACNNNGTG	1 cut(s)	148
DrdI	GACNNNNNNGTC	1 cut(s)	406
DseDI	GACNNNNNNGTC	1 cut(s)	406
EaeI	YGGCCR	2 cut(s)	258, 581
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	266
Eco47I	GGWCC	2 cut(s)	234, 244
Eco57I	CTGAAG	1 cut(s)	75
Eco72I	CACGTG	2 cut(s)	354, 525
Eco88I	CYCGRG	1 cut(s)	248
EcoO109I	RGGNCCY	2 cut(s)	234, 345
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	4 cut(s)	37, 543, 582, 600
FaiI	YATR	6 cut(s)	35, 270, 541, 580, 598, 604
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	4 cut(s)	33, 539, 578, 596
FbaI	TGATCA	1 cut(s)	433
FspBI	CTAG	3 cut(s)	230, 363, 423
GlaI	GCGC	1 cut(s)	306
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	5 cut(s)	260, 266, 281, 346, 583
HapII	CCGG	6 cut(s)	139, 146, 154, 242, 503, 561
HgaI	GACGC	2 cut(s)	13, 460
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	37, 543, 582, 600
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HpaII	CCGG	6 cut(s)	139, 146, 154, 242, 503, 561
HphI	GGTGA	3 cut(s)	437, 500, 575
Hpy166II	GTNNAC	3 cut(s)	151, 357, 558
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	25, 437
Hpy8I	GTNNAC	3 cut(s)	151, 357, 558
Hpy99I	CGWCG	2 cut(s)	326, 476
HpyAV	CCTTC	2 cut(s)	247, 581
HpyCH4III	ACNGT	2 cut(s)	403, 449
HpyCH4IV	ACGT	5 cut(s)	29, 273, 353, 524, 554
HpyF10VI	GCNNNNNNNGC	7 cut(s)	263, 304, 383, 389, 392, 505, 525
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	5 cut(s)	29, 273, 353, 524, 554
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	4 cut(s)	37, 543, 582, 600
HspAI	GCGC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	433, 439
LmnI	GCTCC	5 cut(s)	12, 37, 202, 331, 505
Lsp1109I	GCAGC	7 cut(s)	104, 141, 319, 389, 392, 395, 404
MaeI	CTAG	3 cut(s)	230, 363, 423
MaeII	ACGT	5 cut(s)	29, 273, 353, 524, 554
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	2 cut(s)	435, 441
MboI	GATC	2 cut(s)	433, 439
MboII	GAAGA	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	71, 336
MlsI	TGGCCA	1 cut(s)	583
MluNI	TGGCCA	1 cut(s)	583
MnlI	CCTC	6 cut(s)	156, 299, 319, 336, 358, 586
Mox20I	TGGCCA	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	583
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	4 cut(s)	447, 450, 544, 577
Msp20I	TGGCCA	1 cut(s)	583
MspA1I	CMGCKG	2 cut(s)	132, 310
MspI	CCGG	6 cut(s)	139, 146, 154, 242, 503, 561
MspR9I	CCNGG	4 cut(s)	139, 146, 155, 242
MwoI	GCNNNNNNNGC	7 cut(s)	263, 304, 383, 389, 392, 505, 525
NciI	CCSGG	4 cut(s)	139, 146, 155, 242
NdeII	GATC	2 cut(s)	433, 439
NlaIII	CATG	4 cut(s)	37, 543, 582, 600
NlaIV	GGNNCC	5 cut(s)	136, 143, 204, 235, 246
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	600
PceI	AGGCCT	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	2 cut(s)	468, 530
PinAI	ACCGGT	1 cut(s)	560
PmaCI	CACGTG	2 cut(s)	354, 525
PmlI	CACGTG	2 cut(s)	354, 525
Ppu21I	YACGTR	2 cut(s)	354, 525
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
PspCI	CACGTG	2 cut(s)	354, 525
PspFI	CCCAGC	1 cut(s)	10
PspN4I	GGNNCC	5 cut(s)	136, 143, 204, 235, 246
PspPI	GGNCC	3 cut(s)	234, 244, 345
PspPPI	RGGWCCY	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	5 cut(s)	32, 152, 358, 418, 553
RsaNI	GTAC	5 cut(s)	31, 151, 357, 417, 552
RseI	CAYNNNNRTG	4 cut(s)	447, 450, 544, 577
SaqAI	TTAA	1 cut(s)	575
Sau3AI	GATC	2 cut(s)	433, 439
Sau96I	GGNCC	3 cut(s)	234, 244, 345
ScrFI	CCNGG	4 cut(s)	139, 146, 155, 242
SduI	GDGCHC	2 cut(s)	71, 336
SinI	GGWCC	2 cut(s)	234, 244
SmiMI	CAYNNNNRTG	4 cut(s)	447, 450, 544, 577
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	9 cut(s)	90, 132, 169, 172, 257, 278, 465, 468, 519
SspMI	CTAG	3 cut(s)	230, 363, 423
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	4 cut(s)	137, 144, 153, 240
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	403, 449
TaiI	ACGT	5 cut(s)	32, 276, 356, 527, 557
TaqI	TCGA	2 cut(s)	474, 533
TatI	WGTACW	1 cut(s)	416
TauI	GCSGC	8 cut(s)	92, 135, 172, 260, 281, 468, 471, 522
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	4 cut(s)	58, 91, 408, 436
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	7 cut(s)	92, 129, 307, 377, 380, 383, 392
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	527
TspRI	CASTG	4 cut(s)	58, 91, 408, 436
VpaK11BI	GGWCC	2 cut(s)	234, 244
XceI	RCATGY	1 cut(s)	600
XspI	CTAG	3 cut(s)	230, 363, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.