Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006077

Physical Location & Seq

Genomic Coordinates Forward (+)

136090 .. 138162

Gene Structure 2073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCAGATTCTGGTGAGCCTAAACCTTCTCAGCAAGAAGAACCTCTACCTCAACCTGCTGCCCAAGAAACTCAGTCTCAACAAGTTTGCACTTTCTTCAAGAAGCCAACGAAAAGTAAAAACATAAGAAAAAGAACCATTGACGCTGATGAAGAAGACGGAGATTCGAAAAGCGAAAGCTCTATTCTACAAAATCTAAAGAAAGTTGCAAAACCCGATAGCAAGTTATACTTTTCTTCTGGACCATCTAAGAGTTCTACTACAACGAGTGGAGCTCCTGAGAGGTCCGTCTTTCACTACGATTCATCCAAGGAAATCCAGGTTCAGAACGACAGTGGAGCAACAGCAACCCTTGAAACTGAGACCGACTTCAATCAAGACGCACGAGCTATCCGTGAGAGAGTTCTTAAAAAAGCAGACGAAGCATTGAAAGGGAATAAGAAAAAGGCTTCTGATGAGAAGCTGTACAAAGGAATTCATGGATATACAGATCACAAAGCTGGGTTTAGAAGAGAACAAACAATCTCGAGCGAGAAAGCTGGAGGCTCACACGGGCCATTAAGAGCTTCTGCTCACATAAGAGTGTCGGCTAGATTCGATTACCAGCCAGACATTTGCAAGGATTACAAAGAAACCGGATACTGTGGATATGGAGATTCGTGTAAGTTCTTGCATGACCGTGGGGATTACAAACCAGGATGGCAGATAGAGAAAGAGTGGGAAGAAGCAGAGAAAGTTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGAAGATGATGAGGCTGACAAGGATAGCGACGAAGACGAAAATGCATTGCCCTTTGCTTGCTTCATTTGCAGGGAGCCTTTTGTTGATCCAGTTGTCACCAAATGCAAGCATTACTTCTGTGAGCATTGTGCTTTAAAGCATCACACGAAGAACAAGAAGTGCTTTGTGTGTAACCAACCAACAATGGGGATTTTCAATGCAGCACATGAGATCAAGAAGAGAATGGCTGAAGAACGGAGTAAAGCTGAACAAGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

343

Amino Acids

38.71

Weight (kDa)

6.62

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	201 - 226	1.1e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	206 - 225	9.6e-06	Zinc finger domain
zf-C3HC4_3	PF13920	276 - 318	4e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01350
fragaria_vesca	FvH4_6g10411 FvH4_6g10411
malus_domestica	MD01G1079100.v1.1 MD04G1169800.v1.1 MD07G1148000.v1.1
prunus_persica	Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1
pyrus_communis	pycom01g10740 pycom04g15070 pycom07g14690
rosa_chinensis	RchiOBHm_Chr3g0492261
rosa_laevigata	RLG00000022787
rosa_multiflora	Rmu_sc0002530.1_g000012 Rmu_sc0003579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392460
rosa_rugosa	Rorug03G0252800 Rorug03G0252900 Rorug03G0253000
rosa_samantha	Rh3AG302800 Rh3BG338400 Rh3BG338800 Rh3CG336000 Rh3DG338000
rosa_wichuraiana	Rw3G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	851
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	1020
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	956
AgsI	TTSAA	5 cut(s)	100, 356, 373, 430, 967
AjnI	CCWGG	2 cut(s)	318, 694
AluBI	AGCT	9 cut(s)	180, 275, 389, 463, 500, 539, 566, 755, 1016
AluI	AGCT	9 cut(s)	180, 275, 389, 463, 500, 539, 566, 755, 1016
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	81, 356
AlwI	GGATC	1 cut(s)	851
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	526
AoxI	GGCC	1 cut(s)	554
ApeKI	GCWGC	2 cut(s)	59, 971
ApoI	RAATTY	1 cut(s)	474
AspS9I	GGNCC	3 cut(s)	242, 285, 554
AsuHPI	GGTGA	2 cut(s)	26, 859
AsuII	TTCGAA	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	526
AvaII	GGWCC	2 cut(s)	242, 285
BanII	GRGCYC	1 cut(s)	277
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BauI	CACGAG	1 cut(s)	384
BbsI	GAAGAC	2 cut(s)	162, 810
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	46, 983
BccI	CCATC	2 cut(s)	253, 693
BciT130I	CCWGG	2 cut(s)	320, 696
BciVI	GTATCC	1 cut(s)	632
BcoDI	GTCTC	2 cut(s)	81, 356
BfaI	CTAG	1 cut(s)	591
BfuAI	ACCTGC	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	632
BisI	GCNGC	2 cut(s)	60, 972
BlsI	GCNGC	2 cut(s)	61, 973
Bme1390I	CCNGG	2 cut(s)	320, 696
Bme18I	GGWCC	2 cut(s)	242, 285
BmeT110I	CYCGRG	1 cut(s)	526
BmgT120I	GGNCC	3 cut(s)	242, 285, 554
BmiI	GGNNCC	1 cut(s)	846
BmrFI	CCNGG	2 cut(s)	320, 696
BmsI	GCATC	1 cut(s)	919
BpiI	GAAGAC	2 cut(s)	162, 810
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpmI	CTGGAG	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	309, 679
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	1 cut(s)	956
Bse1I	ACTGG	1 cut(s)	860
Bse3DI	GCAATG	1 cut(s)	815
BseBI	CCWGG	2 cut(s)	320, 696
BseDI	CCNNGG	2 cut(s)	309, 679
BseGI	GGATG	3 cut(s)	305, 704, 775
BseLI	CCNNNNNNNGG	1 cut(s)	956
BseMI	GCAATG	1 cut(s)	815
BseMII	CTCAG	4 cut(s)	44, 86, 270, 351
BseNI	ACTGG	1 cut(s)	860
BseXI	GCAGC	2 cut(s)	46, 983
BseYI	CCCAGC	1 cut(s)	500
BshFI	GGCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	526
BsiSI	CCGG	1 cut(s)	636
BslI	CCNNNNNNNGG	1 cut(s)	956
BsmAI	GTCTC	2 cut(s)	81, 356
BsnI	GGCC	1 cut(s)	556
Bso31I	GGTCTC	1 cut(s)	356
BsoBI	CYCGRG	1 cut(s)	526
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	3 cut(s)	490, 856, 981
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	4 cut(s)	43, 85, 271, 352
BspLI	GGNNCC	1 cut(s)	846
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	851
BspT104I	TTCGAA	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	815
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	860
BssECI	CCNNGG	2 cut(s)	309, 679
BssMI	GATC	3 cut(s)	490, 856, 981
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	320, 696
Bst4CI	ACNGT	3 cut(s)	335, 644, 680
Bst6I	CTCTTC	3 cut(s)	505, 737, 983
BstAUI	TGTACA	1 cut(s)	465
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	829, 878
BstDEI	CTNAG	5 cut(s)	30, 72, 249, 279, 360
BstDSI	CCRYGG	1 cut(s)	679
BstF5I	GGATG	3 cut(s)	305, 704, 775
BstKTI	GATC	3 cut(s)	493, 859, 984
BstMAI	GTCTC	2 cut(s)	81, 356
BstMBI	GATC	3 cut(s)	490, 856, 981
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 837
BstNI	CCWGG	2 cut(s)	320, 696
BstSCI	CCNGG	2 cut(s)	318, 694
BstV1I	GCAGC	2 cut(s)	46, 983
BstV2I	GAAGAC	2 cut(s)	162, 810
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	1 cut(s)	556
BtgI	CCRYGG	1 cut(s)	679
BtsCI	GGATG	3 cut(s)	305, 704, 775
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	829, 878
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	242, 285, 554
CseI	GACGC	2 cut(s)	152, 389
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	3 cut(s)	479, 674, 977
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	5 cut(s)	30, 72, 249, 279, 360
DpnI	GATC	3 cut(s)	492, 858, 983
DpnII	GATC	3 cut(s)	490, 856, 981
DraI	TTTAAA	1 cut(s)	906
Eam1104I	CTCTTC	3 cut(s)	505, 737, 983
EarI	CTCTTC	3 cut(s)	505, 737, 983
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	356
Eco47I	GGWCC	2 cut(s)	242, 285
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	1020
Eco88I	CYCGRG	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	318, 694
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	817
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	3 cut(s)	482, 677, 980
FaiI	YATR	9 cut(s)	125, 229, 480, 486, 578, 651, 675, 758, 978
FalI	AAGNNNNNCTT	6 cut(s)	215, 247, 869, 901, 917, 949
FatI	CATG	3 cut(s)	478, 673, 976
Fnu4HI	GCNGC	2 cut(s)	60, 972
FokI	GGATG	3 cut(s)	292, 711, 782
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	2 cut(s)	60, 972
FspBI	CTAG	1 cut(s)	591
GluI	GCNGC	2 cut(s)	60, 972
GsaI	CCCAGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	1 cut(s)	636
HgaI	GACGC	2 cut(s)	152, 389
Hin1II	CATG	3 cut(s)	482, 677, 980
HinfI	GANTC	5 cut(s)	8, 164, 302, 594, 656
HpaII	CCGG	1 cut(s)	636
HphI	GGTGA	2 cut(s)	26, 859
Hpy188I	TCNGA	3 cut(s)	7, 327, 454
Hpy188III	TCNNGA	6 cut(s)	100, 240, 278, 377, 526, 985
Hpy99I	CGWCG	1 cut(s)	803
HpyAV	CCTTC	1 cut(s)	36
HpyCH4III	ACNGT	3 cut(s)	335, 644, 680
HpyCH4V	TGCA	8 cut(s)	90, 209, 618, 673, 815, 840, 876, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 837
HpyF3I	CTNAG	5 cut(s)	30, 72, 249, 279, 360
Hsp92II	CATG	3 cut(s)	482, 677, 980
Kzo9I	GATC	3 cut(s)	490, 856, 981
LmnI	GCTCC	4 cut(s)	272, 280, 338, 844
Lsp1109I	GCAGC	2 cut(s)	46, 983
LweI	GCATC	1 cut(s)	919
MaeI	CTAG	1 cut(s)	591
MaeIII	GTNAC	2 cut(s)	865, 941
MalI	GATC	3 cut(s)	492, 858, 983
MboI	GATC	3 cut(s)	490, 856, 981
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	1 cut(s)	474
MnlI	CCTC	6 cut(s)	54, 60, 276, 536, 760, 775
Mph1103I	ATGCAT	1 cut(s)	817
MseI	TTAA	3 cut(s)	408, 560, 905
MslI	CAYNNNNRTG	2 cut(s)	581, 678
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	2 cut(s)	320, 696
MvaI	CCWGG	2 cut(s)	320, 696
MwoI	GCNNNNNNNGC	2 cut(s)	422, 837
NdeII	GATC	3 cut(s)	490, 856, 981
NlaIII	CATG	3 cut(s)	482, 677, 980
NlaIV	GGNNCC	1 cut(s)	846
NmuCI	GTSAC	1 cut(s)	865
NsiI	ATGCAT	1 cut(s)	817
NspV	TTCGAA	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PfeI	GAWTC	5 cut(s)	8, 164, 302, 594, 656
PkrI	GCNGC	2 cut(s)	61, 973
Psp124BI	GAGCTC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	318, 694
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	2 cut(s)	318, 694
PspN4I	GGNNCC	1 cut(s)	846
PspPI	GGNCC	3 cut(s)	242, 285, 554
PstNI	CAGNNNCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	2 cut(s)	581, 678
SacI	GAGCTC	1 cut(s)	277
SaqAI	TTAA	3 cut(s)	408, 560, 905
SatI	GCNGC	2 cut(s)	60, 972
Sau3AI	GATC	3 cut(s)	490, 856, 981
Sau96I	GGNCC	3 cut(s)	242, 285, 554
ScrFI	CCNGG	2 cut(s)	320, 696
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	919
Sfr274I	CTCGAG	1 cut(s)	526
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	2 cut(s)	242, 285
SlaI	CTCGAG	1 cut(s)	526
SmiMI	CAYNNNNRTG	2 cut(s)	581, 678
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	1 cut(s)	474
SspMI	CTAG	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	318, 694
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	335, 644, 680
TaqI	TCGA	3 cut(s)	167, 527, 597
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	1 cut(s)	474
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	5 cut(s)	8, 164, 302, 594, 656
Tru1I	TTAA	3 cut(s)	408, 560, 905
Tru9I	TTAA	3 cut(s)	408, 560, 905
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	865
TseI	GCWGC	2 cut(s)	59, 971
Tsp45I	GTSAC	1 cut(s)	865
TspDTI	ATGAA	5 cut(s)	165, 294, 467, 786, 823
TspGWI	ACGGA	4 cut(s)	174, 277, 383, 1021
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	2 cut(s)	242, 285
XapI	RAATTY	1 cut(s)	474
XhoI	CTCGAG	1 cut(s)	526
XspI	CTAG	1 cut(s)	591
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.