Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006077

Physical Location & Seq

Genomic Coordinates Reverse (-)

16740836 .. 16741674

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGACTGAGACTGAGTTCTCCAGAGATGCACGAGCAGTTCGAGAAAGAGTTCTCAAGCAGGCAGAAGAGGCTTTGAAGGGAAAGGGAAAAACCACCGGCAATGAAAAGTTGTATAAAGGGATCGATCGATATACTGATTACAAGGCTGGGTTCCGAAGAGAACTAACAGTAGCCAGTGAGAAAGCAGGAGGTGCCCATGGGCCTCTCAGGGCCTCTGCTCACATCAGGACTTCTACGAGATTCGATTATCAGCCAGACATCTGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGAGATTCCTGCAAGTTTATGAATGATCGTGGGGACTACAAATCTGGCTGGCAGATGGAAAAAGAGTGGGATGAAGCAGAGAAAGCGAGGAAGAGAAAATTAGCTATGGGTGACGATTATGTGGATGAGTCTGAGGAAGATGATGATGATGATGATGAAGATGATGGCTCGTTGCCCTTCACATGTTTCATCTGCAGGCAACCATTTGTTGATCCTGTCGTAACTAAGTGCAACCATTACTTCTGTGAGCATTGTGCACTGAAGCATCATTCGAAGAACAAGAAATGCTTTGGCTGCGACAAGCCTACTCTTGGCATATTCAACACAGCTCACGAGATACGAAAAAGAATGGCTGCGGAGGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

223

Amino Acids

25.47

Weight (kDa)

6.02

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	84 - 107	6e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-C3HC4_3	PF13920	161 - 202	1.8e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01350
fragaria_vesca	FvH4_6g10411 FvH4_6g10411
malus_domestica	MD01G1079100.v1.1 MD04G1169800.v1.1 MD07G1148000.v1.1
prunus_persica	Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1
pyrus_communis	pycom01g10740 pycom04g15070 pycom07g14690
rosa_chinensis	RchiOBHm_Chr3g0492261
rosa_laevigata	RLG00000022787
rosa_multiflora	Rmu_sc0002530.1_g000012 Rmu_sc0003579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392460
rosa_rugosa	Rorug03G0252800 Rorug03G0252900 Rorug03G0253000
rosa_samantha	Rh3AG302800 Rh3BG338400 Rh3BG338800 Rh3CG336000 Rh3DG338000
rosa_wichuraiana	Rw3G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	2 cut(s)	131, 506
AcuI	CTGAAG	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	611
AflIII	ACRYGT	1 cut(s)	482
AgsI	TTSAA	2 cut(s)	79, 622
AluBI	AGCT	2 cut(s)	404, 629
AluI	AGCT	2 cut(s)	404, 629
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	5, 275
Alw44I	GTGCAC	1 cut(s)	555
AlwI	GGATC	2 cut(s)	131, 506
AoxI	GGCC	2 cut(s)	203, 213
ApaLI	GTGCAC	1 cut(s)	555
ApeKI	GCWGC	2 cut(s)	594, 653
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	203, 213
AsuHPI	GGTGA	1 cut(s)	422
AsuII	TTCGAA	1 cut(s)	572
BaeGI	GKGCMC	2 cut(s)	199, 559
BanI	GGYRCC	1 cut(s)	194
BauI	CACGAG	2 cut(s)	33, 632
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	2 cut(s)	581, 640
BccI	CCATC	2 cut(s)	349, 458
BcoDI	GTCTC	2 cut(s)	5, 275
BfmI	CTRYAG	1 cut(s)	493
BisI	GCNGC	2 cut(s)	595, 654
BlsI	GCNGC	2 cut(s)	596, 655
BmgT120I	GGNCC	2 cut(s)	203, 213
BmiI	GGNNCC	2 cut(s)	155, 196
BmsI	GCATC	2 cut(s)	19, 574
BpmI	CTGGAG	1 cut(s)	7
Bpu14I	TTCGAA	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	41
Bsa29I	ATCGAT	2 cut(s)	126, 130
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	177, 289
Bse3DI	GCAATG	1 cut(s)	109
BseCI	ATCGAT	2 cut(s)	126, 130
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	376, 430
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	3 cut(s)	6, 223, 423
BseNI	ACTGG	2 cut(s)	177, 289
BseSI	GKGCMC	2 cut(s)	199, 559
BseXI	GCAGC	2 cut(s)	581, 640
BseYI	CCCAGC	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	205, 215
BshNI	GGYRCC	1 cut(s)	194
BshVI	ATCGAT	2 cut(s)	126, 130
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	5, 275
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	205, 215
Bsp119I	TTCGAA	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	199, 559
Bsp143I	GATC	4 cut(s)	123, 127, 325, 511
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	2 cut(s)	205, 215
BspCNI	CTCAG	3 cut(s)	7, 222, 424
BspDI	ATCGAT	2 cut(s)	126, 130
BspLI	GGNNCC	2 cut(s)	155, 196
BspMAI	CTGCAG	1 cut(s)	497
BspPI	GGATC	2 cut(s)	131, 506
BspT104I	TTCGAA	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	177, 289
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	4 cut(s)	123, 127, 325, 511
BssSI	CACGAG	2 cut(s)	33, 632
BssT1I	CCWWGG	1 cut(s)	199
Bst2BI	CACGAG	2 cut(s)	33, 632
Bst4CI	ACNGT	2 cut(s)	172, 293
Bst6I	CTCTTC	3 cut(s)	63, 154, 386
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	572
BstC8I	GCNNGC	3 cut(s)	63, 350, 497
BstDEI	CTNAG	5 cut(s)	9, 15, 209, 432, 525
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	376, 430
BstKTI	GATC	4 cut(s)	126, 130, 328, 514
BstMAI	GTCTC	2 cut(s)	5, 275
BstMBI	GATC	4 cut(s)	123, 127, 325, 511
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 194, 383, 594
BstNSI	RCATGY	1 cut(s)	486
BstSFI	CTRYAG	1 cut(s)	493
BstSLI	GKGCMC	2 cut(s)	199, 559
BstV1I	GCAGC	2 cut(s)	581, 640
Bsu15I	ATCGAT	2 cut(s)	126, 130
BsuRI	GGCC	2 cut(s)	205, 215
BsuTUI	ATCGAT	2 cut(s)	126, 130
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	376, 430
BtsIMutI	CAGTG	2 cut(s)	184, 557
Cac8I	GCNNGC	3 cut(s)	63, 350, 497
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	203, 213
ClaI	ATCGAT	2 cut(s)	126, 130
CviAII	CATG	2 cut(s)	200, 483
DdeI	CTNAG	5 cut(s)	9, 15, 209, 432, 525
DpnI	GATC	4 cut(s)	125, 129, 327, 513
DpnII	GATC	4 cut(s)	123, 127, 325, 511
Eam1104I	CTCTTC	3 cut(s)	63, 154, 386
EarI	CTCTTC	3 cut(s)	63, 154, 386
Eco130I	CCWWGG	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	2 cut(s)	203, 486
FaiI	YATR	9 cut(s)	117, 135, 201, 300, 320, 407, 420, 484, 617
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	199, 482
Fnu4HI	GCNGC	2 cut(s)	595, 654
FokI	GGATG	2 cut(s)	383, 437
Fsp4HI	GCNGC	2 cut(s)	595, 654
GluI	GCNGC	2 cut(s)	595, 654
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	7
HaeIII	GGCC	2 cut(s)	205, 215
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	203, 486
HinfI	GANTC	3 cut(s)	243, 305, 428
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	2 cut(s)	158, 433
Hpy188III	TCNNGA	4 cut(s)	24, 44, 229, 632
Hpy8I	GTNNAC	1 cut(s)	557
HpyAV	CCTTC	2 cut(s)	73, 487
HpyCH4III	ACNGT	2 cut(s)	172, 293
HpyCH4V	TGCA	5 cut(s)	32, 312, 495, 531, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 194, 383, 594
HpyF3I	CTNAG	5 cut(s)	9, 15, 209, 432, 525
Hsp92II	CATG	2 cut(s)	203, 486
Kzo9I	GATC	4 cut(s)	123, 127, 325, 511
Lsp1109I	GCAGC	2 cut(s)	581, 640
LweI	GCATC	2 cut(s)	19, 574
MaeIII	GTNAC	3 cut(s)	287, 410, 520
MalI	GATC	4 cut(s)	125, 129, 327, 513
MboI	GATC	4 cut(s)	123, 127, 325, 511
MboII	GAAGA	6 cut(s)	80, 171, 403, 449, 470, 586
MhlI	GDGCHC	2 cut(s)	199, 559
MluCI	AATT	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	7 cut(s)	64, 185, 216, 226, 381, 427, 652
MroXI	GAANNNNTTC	1 cut(s)	51
MspI	CCGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	71, 194, 383, 594
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	123, 127, 325, 511
NlaIII	CATG	2 cut(s)	203, 486
NlaIV	GGNNCC	2 cut(s)	155, 196
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	486
NspV	TTCGAA	1 cut(s)	572
PciI	ACATGT	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	243, 305
PkrI	GCNGC	2 cut(s)	596, 655
Ple19I	CGATCG	1 cut(s)	130
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PscI	ACATGT	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	155, 196
PspPI	GGNCC	2 cut(s)	203, 213
PstI	CTGCAG	1 cut(s)	497
PvuI	CGATCG	1 cut(s)	130
SatI	GCNGC	2 cut(s)	595, 654
Sau3AI	GATC	4 cut(s)	123, 127, 325, 511
Sau96I	GGNCC	2 cut(s)	203, 213
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	2 cut(s)	199, 559
SetI	ASST	3 cut(s)	196, 406, 631
SfaNI	GCATC	2 cut(s)	19, 574
SfcI	CTRYAG	1 cut(s)	493
SfuI	TTCGAA	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	398
SsiI	CCGC	1 cut(s)	656
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	172, 293
TaqI	TCGA	5 cut(s)	43, 126, 130, 246, 572
TasI	AATT	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	243, 305
TscAI	CASTG	2 cut(s)	184, 564
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	594, 653
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	5 cut(s)	120, 335, 387, 471, 478
TspRI	CASTG	2 cut(s)	184, 564
VneI	GTGCAC	1 cut(s)	555
XceI	RCATGY	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.