Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006077

Physical Location & Seq

Genomic Coordinates Forward (+)

26060278 .. 26063507

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1169800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGGATTCAGGTGGAAATCCAGAACCTGGAAAAGTTTGCAACTTCATCCCGAAGTCATCAATGAAGCAAAACATTAGAAAGCGAAGGCCTCATGAAGATGAGGAGGAGGACAACTCAACATATGGGGGCACATCATTCCCAAGTCAAAGAAAAGCCGCAAAGCCTGATGGCAAGCTGTATTTTTCTAGTGGACCGGCGAAGAGCTCTACATCTGATGGCAGTGCAATCTTTGAGTTCAAGTCTTCGAAAGAAATCCAAGTAGAAAATGATAGCAGAGCAACAGCGACTCTGGAGACTGAGACTGAGTTTTCTAGAGATGCCCGAGCTGTTCGCGAGAGAGTTCTTAAGCAGGCAGAGGAGGCTTTGCAGGGGACGAGCAAAGAGACTGGGAATGAAAAGTTATATAAGGGGATCCATGGTTATACTGACTACAAGGCTGGGTTCCGAAGAGAGCTAACAGTGGCCAGTGAGAAAGCGGGAGGTTCCCATGGGCCTCTCAGAGCTTCTGCGCACATCAGAGCTACCACAAGATTTGATTATCAGCCAGACATTTGTAAGGACTACAAAGAGACTGGTTATTGTGGTTATGGAGATTCCTGCAAATTTATGCATGATCGTGGAGACTACAAATCTGGGTGGCAGATGGAAAGGGAGTGGGAGGAAGCAGAGAAAACACGGAAGAGGAATTTAGCTTTGGGCCAAGATGATGTGGACCAGTCTGAGGATGATGACGACGACGACGACGAGGATGGCTCGTTGCCATTCGCATGTTTCATCTGCCGGAAACCCTTTGTTGATCCCGTTGTAACCAAGTGCAACCACTACTTCTGTGAGCACTGCGCGCTAAAGCATCATTCGAAGAACAAGAAGTGCTTCGTGTGCAACAAGCCTACTCTTGGCATATTCAATACAGCTCATGAGGTACGGAAAAGGATGGCAGCAGAGGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

319

Amino Acids

35.81

Weight (kDa)

6.39

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	181 - 206	5e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	183 - 211	3.4e-06	DUS3L CCCH zinc finger domain
zf-C3HC4_3	PF13920	257 - 299	6.2e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01350
fragaria_vesca	FvH4_6g10411 FvH4_6g10411
malus_domestica	MD01G1079100.v1.1 MD04G1169800.v1.1 MD07G1148000.v1.1
prunus_persica	Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1
pyrus_communis	pycom01g10740 pycom04g15070 pycom07g14690
rosa_chinensis	RchiOBHm_Chr3g0492261
rosa_laevigata	RLG00000022787
rosa_multiflora	Rmu_sc0002530.1_g000012 Rmu_sc0003579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392460
rosa_rugosa	Rorug03G0252800 Rorug03G0252900 Rorug03G0253000
rosa_samantha	Rh3AG302800 Rh3BG338400 Rh3BG338800 Rh3CG336000 Rh3DG338000
rosa_wichuraiana	Rw3G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	513
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccII	CGCG	2 cut(s)	336, 845
AciI	CCGC	3 cut(s)	5, 159, 479
AclWI	GGATC	3 cut(s)	409, 422, 794
AcoI	YGGCCR	1 cut(s)	465
AcsI	RAATTY	2 cut(s)	605, 688
AfaI	GTAC	1 cut(s)	927
AfiI	CCNNNNNNNGG	3 cut(s)	29, 724, 899
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	241, 910
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	8 cut(s)	178, 207, 329, 457, 506, 524, 695, 917
AluI	AGCT	8 cut(s)	178, 207, 329, 457, 506, 524, 695, 917
Alw21I	GWGCWC	2 cut(s)	209, 840
Alw26I	GTCTC	5 cut(s)	290, 296, 380, 566, 618
AlwI	GGATC	3 cut(s)	409, 422, 794
AlwNI	CAGNNNCTG	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	4 cut(s)	89, 465, 494, 700
ApeKI	GCWGC	1 cut(s)	941
ApoI	RAATTY	2 cut(s)	605, 688
Asp700I	GAANNNNTTC	1 cut(s)	875
AspLEI	GCGC	3 cut(s)	514, 845, 847
AspS9I	GGNCC	4 cut(s)	194, 494, 700, 715
AsuII	TTCGAA	2 cut(s)	248, 860
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	2 cut(s)	194, 715
BaeGI	GKGCMC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	209, 840
BbvI	GCAGC	1 cut(s)	953
BccI	CCATC	5 cut(s)	164, 212, 640, 746, 931
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	5 cut(s)	290, 296, 380, 566, 618
BfaI	CTAG	2 cut(s)	189, 315
BfrI	CTTAAG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	159, 942
BlsI	GCNGC	2 cut(s)	160, 943
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	2 cut(s)	194, 715
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	4 cut(s)	194, 494, 700, 715
BmiI	GGNNCC	3 cut(s)	416, 446, 487
BmrFI	CCNGG	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	310, 862
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	4 cut(s)	101, 133, 740, 772
BpmI	CTGGAG	1 cut(s)	314
Bpu14I	TTCGAA	2 cut(s)	248, 860
BsaJI	CCNNGG	2 cut(s)	418, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 724, 899
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	4 cut(s)	394, 468, 580, 718
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	418, 490
BseGI	GGATG	4 cut(s)	48, 733, 757, 942
BseLI	CCNNNNNNNGG	3 cut(s)	29, 724, 899
BseMII	CTCAG	4 cut(s)	291, 297, 514, 714
BseNI	ACTGG	4 cut(s)	394, 468, 580, 718
BsePI	GCGCGC	1 cut(s)	843
BseRI	GAGGAG	3 cut(s)	119, 122, 374
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	953
BseYI	CCCAGC	1 cut(s)	440
Bsh1236I	CGCG	2 cut(s)	336, 845
BshFI	GGCC	4 cut(s)	91, 467, 496, 702
BsiHKAI	GWGCWC	2 cut(s)	209, 840
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	197, 784
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	3 cut(s)	29, 724, 899
BsmAI	GTCTC	5 cut(s)	290, 296, 380, 566, 618
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	4 cut(s)	91, 467, 496, 702
BsoBI	CYCGRG	1 cut(s)	324
Bsp119I	TTCGAA	2 cut(s)	248, 860
Bsp1286I	GDGCHC	3 cut(s)	134, 209, 840
Bsp143I	GATC	3 cut(s)	414, 616, 799
Bsp19I	CCATGG	2 cut(s)	418, 490
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	3 cut(s)	5, 159, 479
BspANI	GGCC	4 cut(s)	91, 467, 496, 702
BspCNI	CTCAG	4 cut(s)	292, 298, 513, 715
BspFNI	CGCG	2 cut(s)	336, 845
BspHI	TCATGA	2 cut(s)	94, 919
BspLI	GGNNCC	3 cut(s)	416, 446, 487
BspPI	GGATC	3 cut(s)	409, 422, 794
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	2 cut(s)	248, 860
BspTI	CTTAAG	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	4 cut(s)	394, 468, 580, 718
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	418, 490
BssHII	GCGCGC	1 cut(s)	843
BssMI	GATC	3 cut(s)	414, 616, 799
BssT1I	CCWWGG	2 cut(s)	418, 490
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	3 cut(s)	197, 445, 677
BstAFI	CTTAAG	1 cut(s)	347
BstBI	TTCGAA	2 cut(s)	248, 860
BstC8I	GCNNGC	3 cut(s)	176, 354, 845
BstDEI	CTNAG	4 cut(s)	300, 306, 500, 723
BstDSI	CCRYGG	2 cut(s)	418, 490
BstF5I	GGATG	4 cut(s)	48, 733, 757, 942
BstFNI	CGCG	2 cut(s)	336, 845
BstHHI	GCGC	3 cut(s)	514, 845, 847
BstKTI	GATC	3 cut(s)	417, 619, 802
BstMAI	GTCTC	5 cut(s)	290, 296, 380, 566, 618
BstMBI	GATC	3 cut(s)	414, 616, 799
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 844, 882
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	774
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	134
BstUI	CGCG	2 cut(s)	336, 845
BstV1I	GCAGC	1 cut(s)	953
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	91, 467, 496, 702
BtgI	CCRYGG	2 cut(s)	418, 490
BtsCI	GGATG	4 cut(s)	48, 733, 757, 942
BtsI	GCAGTG	2 cut(s)	229, 838
BtsIMutI	CAGTG	4 cut(s)	229, 468, 475, 838
BtuMI	TCGCGA	1 cut(s)	336
Cac8I	GCNNGC	3 cut(s)	176, 354, 845
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	2 cut(s)	94, 919
CfoI	GCGC	3 cut(s)	514, 845, 847
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	4 cut(s)	194, 494, 700, 715
Csp6I	GTAC	1 cut(s)	926
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	6 cut(s)	95, 419, 491, 614, 771, 920
CviQI	GTAC	1 cut(s)	926
DdeI	CTNAG	4 cut(s)	300, 306, 500, 723
DpnI	GATC	3 cut(s)	416, 618, 801
DpnII	GATC	3 cut(s)	414, 616, 799
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	3 cut(s)	197, 445, 677
EarI	CTCTTC	3 cut(s)	197, 445, 677
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	418, 490
Eco147I	AGGCCT	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	194, 715
Eco53kI	GAGCTC	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	418, 490
EcoT22I	ATGCAT	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	2 cut(s)	418, 490
FaeI	CATG	6 cut(s)	98, 422, 494, 617, 774, 923
FalI	AAGNNNNNCTT	2 cut(s)	860, 892
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	6 cut(s)	94, 418, 490, 613, 770, 919
FauI	CCCGC	1 cut(s)	472
FauNDI	CATATG	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	159, 942
FokI	GGATG	4 cut(s)	35, 740, 764, 949
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	159, 942
FspBI	CTAG	2 cut(s)	189, 315
FspI	TGCGCA	1 cut(s)	513
GlaI	GCGC	3 cut(s)	513, 844, 846
GluI	GCNGC	2 cut(s)	159, 942
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	4 cut(s)	91, 467, 496, 702
HapII	CCGG	2 cut(s)	197, 784
HhaI	GCGC	3 cut(s)	514, 845, 847
Hin1II	CATG	6 cut(s)	98, 422, 494, 617, 774, 923
Hin6I	GCGC	3 cut(s)	512, 843, 845
HinP1I	GCGC	3 cut(s)	512, 843, 845
HinfI	GANTC	3 cut(s)	8, 289, 596
HpaII	CCGG	2 cut(s)	197, 784
Hpy166II	GTNNAC	2 cut(s)	194, 715
Hpy188I	TCNGA	5 cut(s)	217, 449, 503, 521, 724
Hpy188III	TCNNGA	7 cut(s)	23, 52, 95, 293, 315, 335, 920
Hpy8I	GTNNAC	2 cut(s)	194, 715
Hpy99I	CGWCG	4 cut(s)	740, 743, 746, 749
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	7 cut(s)	42, 227, 370, 603, 613, 819, 885
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 844, 882
HpyF3I	CTNAG	4 cut(s)	300, 306, 500, 723
Hsp92II	CATG	6 cut(s)	98, 422, 494, 617, 774, 923
HspAI	GCGC	3 cut(s)	512, 843, 845
Kzo9I	GATC	3 cut(s)	414, 616, 799
LguI	GCTCTTC	1 cut(s)	197
Lsp1109I	GCAGC	1 cut(s)	953
LweI	GCATC	2 cut(s)	310, 862
MaeI	CTAG	2 cut(s)	189, 315
MaeIII	GTNAC	1 cut(s)	808
MalI	GATC	3 cut(s)	416, 618, 801
MboI	GATC	3 cut(s)	414, 616, 799
MboII	GAAGA	6 cut(s)	110, 214, 237, 462, 694, 874
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	3 cut(s)	134, 209, 840
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	2 cut(s)	605, 688
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	1 cut(s)	283
Mox20I	TGGCCA	1 cut(s)	467
Mph1103I	ATGCAT	1 cut(s)	615
MroXI	GAANNNNTTC	1 cut(s)	875
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	3 cut(s)	99, 618, 769
Msp20I	TGGCCA	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	197, 784
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	2 cut(s)	336, 845
MwoI	GCNNNNNNNGC	3 cut(s)	362, 844, 882
NcoI	CCATGG	2 cut(s)	418, 490
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	3 cut(s)	414, 616, 799
NlaIII	CATG	6 cut(s)	98, 422, 494, 617, 774, 923
NlaIV	GGNNCC	3 cut(s)	416, 446, 487
NruI	TCGCGA	1 cut(s)	336
NsbI	TGCGCA	1 cut(s)	513
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	1 cut(s)	774
NspV	TTCGAA	2 cut(s)	248, 860
PagI	TCATGA	2 cut(s)	94, 919
PauI	GCGCGC	1 cut(s)	843
PceI	AGGCCT	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	2 cut(s)	741, 744
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	2 cut(s)	8, 596
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	160, 943
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	416, 446, 487
PspPI	GGNCC	4 cut(s)	194, 494, 700, 715
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	414
PteI	GCGCGC	1 cut(s)	843
RruI	TCGCGA	1 cut(s)	336
RsaI	GTAC	1 cut(s)	927
RsaNI	GTAC	1 cut(s)	926
RseI	CAYNNNNRTG	3 cut(s)	99, 618, 769
SacI	GAGCTC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	2 cut(s)	159, 942
Sau3AI	GATC	3 cut(s)	414, 616, 799
Sau96I	GGNCC	4 cut(s)	194, 494, 700, 715
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	3 cut(s)	134, 209, 840
SfaNI	GCATC	2 cut(s)	310, 862
SfuI	TTCGAA	2 cut(s)	248, 860
SinI	GGWCC	2 cut(s)	194, 715
SmiMI	CAYNNNNRTG	3 cut(s)	99, 618, 769
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	2 cut(s)	605, 688
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	3 cut(s)	5, 159, 479
SspMI	CTAG	2 cut(s)	189, 315
SstI	GAGCTC	1 cut(s)	209
StuI	AGGCCT	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	2 cut(s)	418, 490
TaaI	ACNGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	248, 860
TasI	AATT	2 cut(s)	605, 688
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	8, 596
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	4 cut(s)	229, 468, 475, 845
TseI	GCWGC	1 cut(s)	941
TspDTI	ATGAA	5 cut(s)	37, 80, 111, 411, 766
TspGWI	ACGGA	2 cut(s)	694, 943
TspRI	CASTG	4 cut(s)	229, 468, 475, 845
Van91I	CCANNNNNTGG	1 cut(s)	29
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	194, 715
XapI	RAATTY	2 cut(s)	605, 688
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	1 cut(s)	774
XmnI	GAANNNNTTC	1 cut(s)	875
XspI	CTAG	2 cut(s)	189, 315
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.