Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006077

Physical Location & Seq

Genomic Coordinates Reverse (-)

18624992 .. 18627398

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1079100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGGATTCGGGTGAAAATAAAGAGCCTGGAGAAGTTTGCAACTTCTTCCGGAAGCCATCAAGGAGGCAGAACATTAGAAAGCGAAGGACTGATGAAGATGAGGAGGAGGACGATTCAAAGTCTGGGACATCCTTATCAAACCAAAGAAAGGCCCAAAAGTCTGATGGCAAGCTGTTTTTTTCTACCGGACCCTCCAAGAGCTCTGTATCTGATGACAGAGCAGTCTTTGAGTTTGAGTCTTCAAAAGAAATCCAAGTTGAAAATGATAGCAGAGCAACAGCGACTATGGAGACTGAGACTGAGTTCTCCAGAGATGCACGAGCAGTTCGCGAGAGAGTTCTCAAGCAGGCAGAGGAGGCTTTGAAGGGAAAGGGCAAAACTACTGGCAATGAAAAGTTGTATAAAGGGATCCATGGATATACTGATTACAAGGCTGGGTTCCGAAGAGAGCTAACAGTGGCCAGTGAGAAAGCAGGAGGTGCACATGGGCCTCTCAGGGCTTCTGCTCACATCAGGACATCCACGAGATTTGATTATCAGCCAGACATCTGTAAGGATTACAAAGAGACTGGTTACTGTGGGTATGGAGATTCCTGCAAGTTTATGCACGATCGTGGGGACTACAAGTCAGGCTGGCAGATGGAAAAAGAGTGGGATGAAGCAGAAAAAGCAAGGAAGAGAAAACTAGCTATGGGTGAGGATGATGTCGACGAGACTGAGGAAGATGACGACGACGAAGATGATGCTGGGTTGCCCTTTGCATGTTTCATCTGCAGGCAGCCTTTTGTTGATCCTGTAGTAACTAAGTGCAATCATTACTTCTGTGAGCATTGTGCACTAAAGCATCATTCGAAGAACAAGAAATGCTTTGTCTGCGACAAGCCTACACTTGGCATATTCAACACAGCTCATGAGATACGGAAAAGAATGGCTGCAGAGGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

317

Amino Acids

35.97

Weight (kDa)

6.07

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	180 - 205	5e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	182 - 210	3.4e-06	DUS3L CCCH zinc finger domain
zf-C3HC4_3	PF13920	255 - 296	6.9e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01350
fragaria_vesca	FvH4_6g10411 FvH4_6g10411
malus_domestica	MD01G1079100.v1.1 MD04G1169800.v1.1 MD07G1148000.v1.1
prunus_persica	Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1
pyrus_communis	pycom01g10740 pycom04g15070 pycom07g14690
rosa_chinensis	RchiOBHm_Chr3g0492261
rosa_laevigata	RLG00000022787
rosa_multiflora	Rmu_sc0002530.1_g000012 Rmu_sc0003579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392460
rosa_rugosa	Rorug03G0252800 Rorug03G0252900 Rorug03G0253000
rosa_samantha	Rh3AG302800 Rh3BG338400 Rh3BG338800 Rh3CG336000 Rh3DG338000
rosa_wichuraiana	Rw3G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	711
AccII	CGCG	1 cut(s)	333
AccIII	TCCGGA	1 cut(s)	51
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	406, 419, 788
AcoI	YGGCCR	1 cut(s)	462
AfiI	CCNNNNNNNGG	2 cut(s)	151, 893
AgsI	TTSAA	5 cut(s)	120, 246, 263, 367, 904
AhdI	GACNNNNNGTC	1 cut(s)	628
AjnI	CCWGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	615
AluBI	AGCT	5 cut(s)	175, 204, 454, 692, 911
AluI	AGCT	5 cut(s)	175, 204, 454, 692, 911
Alw21I	GWGCWC	3 cut(s)	206, 487, 841
Alw26I	GTCTC	4 cut(s)	287, 293, 563, 710
Alw44I	GTGCAC	2 cut(s)	483, 837
AlwI	GGATC	3 cut(s)	406, 419, 788
Aor13HI	TCCGGA	1 cut(s)	51
AoxI	GGCC	3 cut(s)	153, 462, 491
ApaLI	GTGCAC	2 cut(s)	483, 837
ApeKI	GCWGC	2 cut(s)	781, 935
AspS9I	GGNCC	3 cut(s)	154, 191, 491
AsuHPI	GGTGA	2 cut(s)	26, 710
AsuII	TTCGAA	1 cut(s)	854
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	2 cut(s)	487, 841
BalI	TGGCCA	1 cut(s)	464
BamHI	GGATCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	206
BauI	CACGAG	2 cut(s)	321, 526
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	3 cut(s)	206, 487, 841
BbvI	GCAGC	2 cut(s)	793, 922
BccI	CCATC	3 cut(s)	67, 161, 637
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	4 cut(s)	287, 293, 563, 710
BfaI	CTAG	1 cut(s)	689
BfmI	CTRYAG	3 cut(s)	775, 798, 936
BisI	GCNGC	2 cut(s)	782, 936
BlsI	GCNGC	2 cut(s)	783, 937
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	191
BmeRI	GACNNNNNGTC	1 cut(s)	628
BmgT120I	GGNCC	3 cut(s)	154, 191, 491
BmiI	GGNNCC	3 cut(s)	193, 413, 443
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	3 cut(s)	307, 736, 856
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	2 cut(s)	51, 295
Bpu14I	TTCGAA	1 cut(s)	854
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	415
BsaWI	WCCGGW	2 cut(s)	51, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 893
Bse1I	ACTGG	3 cut(s)	391, 465, 577
Bse3DI	GCAATG	1 cut(s)	397
BseAI	TCCGGA	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	4 cut(s)	131, 521, 664, 709
BseLI	CCNNNNNNNGG	2 cut(s)	151, 893
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	4 cut(s)	288, 294, 511, 711
BseNI	ACTGG	3 cut(s)	391, 465, 577
BseRI	GAGGAG	3 cut(s)	119, 122, 371
BseSI	GKGCMC	2 cut(s)	487, 841
BseXI	GCAGC	2 cut(s)	793, 922
BseYI	CCCAGC	2 cut(s)	437, 749
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	616
BshFI	GGCC	3 cut(s)	155, 464, 493
BsiEI	CGRYCG	1 cut(s)	616
BsiHKAI	GWGCWC	3 cut(s)	206, 487, 841
BsiSI	CCGG	2 cut(s)	52, 189
BslFI	GGGAC	2 cut(s)	142, 635
BslI	CCNNNNNNNGG	2 cut(s)	151, 893
BsmAI	GTCTC	4 cut(s)	287, 293, 563, 710
BsmFI	GGGAC	2 cut(s)	142, 635
BsnI	GGCC	3 cut(s)	155, 464, 493
Bsp119I	TTCGAA	1 cut(s)	854
Bsp1286I	GDGCHC	3 cut(s)	206, 487, 841
Bsp13I	TCCGGA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	411, 613, 793
Bsp19I	CCATGG	1 cut(s)	415
Bsp68I	TCGCGA	1 cut(s)	333
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	155, 464, 493
BspCNI	CTCAG	4 cut(s)	289, 295, 510, 712
BspEI	TCCGGA	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	3 cut(s)	193, 413, 443
BspMAI	CTGCAG	2 cut(s)	779, 940
BspPI	GGATC	3 cut(s)	406, 419, 788
BspT104I	TTCGAA	1 cut(s)	854
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	3 cut(s)	391, 465, 577
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	3 cut(s)	411, 613, 793
BssSI	CACGAG	2 cut(s)	321, 526
BssT1I	CCWWGG	1 cut(s)	415
Bst2BI	CACGAG	2 cut(s)	321, 526
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	460, 581
Bst6I	CTCTTC	2 cut(s)	442, 674
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	854
BstC8I	GCNNGC	4 cut(s)	173, 351, 638, 779
BstDEI	CTNAG	5 cut(s)	297, 303, 497, 720, 807
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	4 cut(s)	131, 521, 664, 709
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	3 cut(s)	414, 616, 796
BstMAI	GTCTC	4 cut(s)	287, 293, 563, 710
BstMBI	GATC	3 cut(s)	411, 613, 793
BstMCI	CGRYCG	1 cut(s)	616
BstMWI	GCNNNNNNNGC	4 cut(s)	359, 482, 671, 876
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	3 cut(s)	775, 798, 936
BstSLI	GKGCMC	2 cut(s)	487, 841
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	793, 922
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	3 cut(s)	155, 464, 493
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	4 cut(s)	131, 521, 664, 709
BtsIMutI	CAGTG	2 cut(s)	465, 472
BtuMI	TCGCGA	1 cut(s)	333
Cac8I	GCNNGC	4 cut(s)	173, 351, 638, 779
CciI	TCATGA	1 cut(s)	913
Cfr13I	GGNCC	3 cut(s)	154, 191, 491
CspCI	CAANNNNNGTGG	2 cut(s)	514, 549
CviAII	CATG	4 cut(s)	416, 488, 765, 914
DdeI	CTNAG	5 cut(s)	297, 303, 497, 720, 807
DpnI	GATC	3 cut(s)	413, 615, 795
DpnII	GATC	3 cut(s)	411, 613, 793
DrdI	GACNNNNNNGTC	1 cut(s)	224
DriI	GACNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	442, 674
Eam1105I	GACNNNNNGTC	1 cut(s)	628
EarI	CTCTTC	2 cut(s)	442, 674
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	4 cut(s)	419, 491, 768, 917
FalI	AAGNNNNNCTT	2 cut(s)	854, 886
FaqI	GGGAC	2 cut(s)	142, 635
FatI	CATG	4 cut(s)	415, 487, 764, 913
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	2 cut(s)	782, 936
FokI	GGATG	4 cut(s)	118, 508, 671, 716
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	782, 936
FspBI	CTAG	1 cut(s)	689
GluI	GCNGC	2 cut(s)	782, 936
GsaI	CCCAGC	2 cut(s)	441, 753
GsuI	CTGGAG	2 cut(s)	51, 295
HaeIII	GGCC	3 cut(s)	155, 464, 493
HapII	CCGG	2 cut(s)	52, 189
Hin1II	CATG	4 cut(s)	419, 491, 768, 917
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	4 cut(s)	8, 116, 239, 593
HpaII	CCGG	2 cut(s)	52, 189
HphI	GGTGA	2 cut(s)	26, 710
Hpy166II	GTNNAC	3 cut(s)	485, 712, 839
Hpy188I	TCNGA	3 cut(s)	166, 214, 446
Hpy188III	TCNNGA	5 cut(s)	52, 312, 332, 517, 914
Hpy8I	GTNNAC	3 cut(s)	485, 712, 839
Hpy99I	CGWCG	3 cut(s)	716, 737, 740
HpyAV	CCTTC	2 cut(s)	81, 361
HpyCH4III	ACNGT	2 cut(s)	460, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	359, 482, 671, 876
HpyF3I	CTNAG	5 cut(s)	297, 303, 497, 720, 807
Hsp92II	CATG	4 cut(s)	419, 491, 768, 917
Kpn2I	TCCGGA	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	411, 613, 793
Lsp1109I	GCAGC	2 cut(s)	793, 922
LweI	GCATC	3 cut(s)	307, 736, 856
MaeI	CTAG	1 cut(s)	689
MaeIII	GTNAC	2 cut(s)	575, 802
MalI	GATC	3 cut(s)	413, 615, 795
MboI	GATC	3 cut(s)	411, 613, 793
MboII	GAAGA	8 cut(s)	40, 110, 234, 459, 691, 737, 752, 868
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	3 cut(s)	206, 487, 841
MlsI	TGGCCA	1 cut(s)	464
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	248
Mox20I	TGGCCA	1 cut(s)	464
MroI	TCCGGA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	464
MslI	CAYNNNNRTG	1 cut(s)	615
Msp20I	TGGCCA	1 cut(s)	464
MspI	CCGG	2 cut(s)	52, 189
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	359, 482, 671, 876
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	3 cut(s)	411, 613, 793
NlaIII	CATG	4 cut(s)	419, 491, 768, 917
NlaIV	GGNNCC	3 cut(s)	193, 413, 443
NruI	TCGCGA	1 cut(s)	333
NspI	RCATGY	1 cut(s)	768
NspV	TTCGAA	1 cut(s)	854
OliI	CACNNNNGTG	1 cut(s)	615
PagI	TCATGA	1 cut(s)	913
PfeI	GAWTC	3 cut(s)	8, 116, 593
PkrI	GCNGC	2 cut(s)	783, 937
Ple19I	CGATCG	1 cut(s)	616
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	2 cut(s)	437, 749
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	193, 413, 443
PspPI	GGNCC	3 cut(s)	154, 191, 491
PstI	CTGCAG	2 cut(s)	779, 940
PsuI	RGATCY	1 cut(s)	411
PvuI	CGATCG	1 cut(s)	616
RruI	TCGCGA	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	615
SacI	GAGCTC	1 cut(s)	206
SalI	GTCGAC	1 cut(s)	710
SatI	GCNGC	2 cut(s)	782, 936
Sau3AI	GATC	3 cut(s)	411, 613, 793
Sau96I	GGNCC	3 cut(s)	154, 191, 491
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	3 cut(s)	206, 487, 841
SetI	ASST	6 cut(s)	177, 206, 456, 484, 694, 913
SfaNI	GCATC	3 cut(s)	307, 736, 856
SfcI	CTRYAG	3 cut(s)	775, 798, 936
SfuI	TTCGAA	1 cut(s)	854
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	689
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	460, 581
TaqI	TCGA	2 cut(s)	711, 854
TfiI	GAWTC	3 cut(s)	8, 116, 593
TscAI	CASTG	2 cut(s)	465, 472
TseI	GCWGC	2 cut(s)	781, 935
TspDTI	ATGAA	4 cut(s)	111, 408, 675, 760
TspGWI	ACGGA	1 cut(s)	937
TspRI	CASTG	2 cut(s)	465, 472
VneI	GTGCAC	2 cut(s)	483, 837
VpaK11BI	GGWCC	1 cut(s)	191
XceI	RCATGY	1 cut(s)	768
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.