Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006077

Physical Location & Seq

Genomic Coordinates Forward (+)

26671237 .. 26677650

Gene Structure 6414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G288300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGGATTCAGGTGGAAATGCAGAACCTGGAGAAGTTTGCAACTTCTTCCGGAAGCCAATAAAGAAGCAAAACATTAGAAAGCGAAGGGTTGATGAAGATGAGGAGGATGACGGCTCAAAATCTGGGGGCACATCATTACCAAGTCAAAGAAAAGCCTCAAAGCTTGATGGCAAGCTGTATTTTTCTAGTGGACCTGCTAAGAGCTCTACTCCTGGTAGTGGTGCAATCTTTGAGTTCAAGTCTTCCAAAGAAATCCAAGTTGAACATGATAGTAGAGCAACTGCGACTTTGGAGACTGAGACAGACTTCTCTAGAGATGCTCGAGCAGTTCGTGAGAGAGTTCTTAAGCAGGCAGAGGAAGCTTTGAAGGGGAAGAGCAAAGGCACTGAGAACGACAAGTTGTATAAAGGGATCCATGGATATACTGATTACAAGGCTGGGTTCCGAAGAGAGCTAACAGTGGCCAGTGAGAAAGCGGGAGGTTCCCATGGGCCTCTCAGGGCTTCTGCTCACATCAGAGCTACCACAAGATTTGATTACCAGCCAGACATCTGTAAGGATTACAAAGAGACTGGCTACTGTGGTTATGGAGATTCCTGCAAGTTTATGCATGATCGTGGAGACTACAAGTCTGGGTGGCAGATGGAAAGGGAGTGGGACGAAGCAGAGAAAATAAGGAAGAGAAATTTAGCTTTGGGTGAGGATGATGTGGACCAGACTGACGAAGATGACGAGGATGATGAGGATGGCTCGTTGCCGTTTGCATGTTTCATCTGCCGCCAACCATTTGTTGATCCTGTTGTGACTAAATGCAACCACTACTTCTGCGAGCACTGTGCACTAAAGCATCATTCAAAGAACAAGAAGTGCTTTGTGTGCGAGAAGCCTACCCTTGGCATATTCAACACAGCTCATGAGATACGCAAAAGGATGGCCGCAGAGGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

318

Amino Acids

35.69

Weight (kDa)

6.57

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01350
fragaria_vesca	FvH4_6g10411 FvH4_6g10411
malus_domestica	MD01G1079100.v1.1 MD04G1169800.v1.1 MD07G1148000.v1.1
prunus_persica	Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1
pyrus_communis	pycom01g10740 pycom04g15070 pycom07g14690
rosa_chinensis	RchiOBHm_Chr3g0492261
rosa_laevigata	RLG00000022787
rosa_multiflora	Rmu_sc0002530.1_g000012 Rmu_sc0003579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392460
rosa_rugosa	Rorug03G0252800 Rorug03G0252900 Rorug03G0253000
rosa_samantha	Rh3AG302800 Rh3BG338400 Rh3BG338800 Rh3CG336000 Rh3DG338000
rosa_wichuraiana	Rw3G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
AccIII	TCCGGA	1 cut(s)	51
AciI	CCGC	4 cut(s)	5, 479, 781, 939
AclWI	GGATC	3 cut(s)	409, 422, 791
AcoI	YGGCCR	2 cut(s)	465, 936
AcsI	RAATTY	1 cut(s)	688
AfiI	CCNNNNNNNGG	2 cut(s)	221, 896
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	5 cut(s)	241, 266, 370, 858, 907
AhdI	GACNNNNNGTC	1 cut(s)	631
AjnI	CCWGG	2 cut(s)	28, 214
AluBI	AGCT	8 cut(s)	166, 178, 207, 365, 457, 524, 695, 914
AluI	AGCT	8 cut(s)	166, 178, 207, 365, 457, 524, 695, 914
Alw21I	GWGCWC	3 cut(s)	209, 837, 844
Alw26I	GTCTC	4 cut(s)	290, 296, 566, 618
Alw44I	GTGCAC	1 cut(s)	840
AlwI	GGATC	3 cut(s)	409, 422, 791
AlwNI	CAGNNNCTG	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	324
Aor13HI	TCCGGA	1 cut(s)	51
AoxI	GGCC	3 cut(s)	465, 494, 936
ApaLI	GTGCAC	1 cut(s)	840
ApoI	RAATTY	1 cut(s)	688
AspS9I	GGNCC	3 cut(s)	194, 494, 715
AsuHPI	GGTGA	1 cut(s)	713
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	2 cut(s)	194, 715
BaeGI	GKGCMC	2 cut(s)	134, 844
BalI	TGGCCA	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	3 cut(s)	209, 837, 844
BccI	CCATC	4 cut(s)	164, 640, 743, 928
BceAI	ACGGC	2 cut(s)	130, 745
BcgI	CGANNNNNNTGC	2 cut(s)	821, 855
BciT130I	CCWGG	2 cut(s)	30, 216
BcoDI	GTCTC	4 cut(s)	290, 296, 566, 618
BfaI	CTAG	2 cut(s)	189, 315
BfrI	CTTAAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	2 cut(s)	781, 939
BlsI	GCNGC	2 cut(s)	782, 940
Bme1390I	CCNGG	2 cut(s)	30, 216
Bme18I	GGWCC	2 cut(s)	194, 715
BmeRI	GACNNNNNGTC	1 cut(s)	631
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	3 cut(s)	194, 494, 715
BmiI	GGNNCC	3 cut(s)	416, 446, 487
BmrFI	CCNGG	2 cut(s)	30, 216
BmsI	GCATC	2 cut(s)	310, 859
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	4 cut(s)	196, 228, 737, 769
BpmI	CTGGAG	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	418, 490, 895
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 896
Bse1I	ACTGG	2 cut(s)	468, 580
BseAI	TCCGGA	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	30, 216
BseDI	CCNNGG	3 cut(s)	418, 490, 895
BseGI	GGATG	5 cut(s)	115, 712, 745, 754, 939
BseLI	CCNNNNNNNGG	2 cut(s)	221, 896
BseMII	CTCAG	3 cut(s)	291, 381, 514
BseNI	ACTGG	2 cut(s)	468, 580
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	2 cut(s)	134, 844
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	3 cut(s)	467, 496, 938
BsiHKAI	GWGCWC	3 cut(s)	209, 837, 844
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	2 cut(s)	221, 896
BsmAI	GTCTC	4 cut(s)	290, 296, 566, 618
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	3 cut(s)	467, 496, 938
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	4 cut(s)	134, 209, 837, 844
Bsp13I	TCCGGA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	414, 616, 796
Bsp19I	CCATGG	2 cut(s)	418, 490
BspACI	CCGC	4 cut(s)	5, 479, 781, 939
BspANI	GGCC	3 cut(s)	467, 496, 938
BspCNI	CTCAG	3 cut(s)	292, 382, 513
BspEI	TCCGGA	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	3 cut(s)	416, 446, 487
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	3 cut(s)	409, 422, 791
BspQI	GCTCTTC	1 cut(s)	371
BspTI	CTTAAG	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	468, 580
BssECI	CCNNGG	3 cut(s)	418, 490, 895
BssMI	GATC	3 cut(s)	414, 616, 796
BssT1I	CCWWGG	3 cut(s)	418, 490, 895
Bst2UI	CCWGG	2 cut(s)	30, 216
Bst4CI	ACNGT	3 cut(s)	463, 584, 839
Bst6I	CTCTTC	3 cut(s)	371, 445, 677
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	176, 354, 833
BstDEI	CTNAG	4 cut(s)	201, 300, 390, 500
BstDSI	CCRYGG	2 cut(s)	418, 490
BstF5I	GGATG	5 cut(s)	115, 712, 745, 754, 939
BstKTI	GATC	3 cut(s)	417, 619, 799
BstMAI	GTCTC	4 cut(s)	290, 296, 566, 618
BstMBI	GATC	3 cut(s)	414, 616, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 879
BstNI	CCWGG	2 cut(s)	30, 216
BstNSI	RCATGY	1 cut(s)	771
BstSCI	CCNGG	2 cut(s)	28, 214
BstSLI	GKGCMC	2 cut(s)	134, 844
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	467, 496, 938
BtgI	CCRYGG	2 cut(s)	418, 490
BtsCI	GGATG	5 cut(s)	115, 712, 745, 754, 939
BtsIMutI	CAGTG	4 cut(s)	387, 468, 475, 835
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	3 cut(s)	176, 354, 833
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	916
Cfr13I	GGNCC	3 cut(s)	194, 494, 715
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	6 cut(s)	269, 419, 491, 614, 768, 917
DdeI	CTNAG	4 cut(s)	201, 300, 390, 500
DpnI	GATC	3 cut(s)	416, 618, 798
DpnII	GATC	3 cut(s)	414, 616, 796
DriI	GACNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	2 cut(s)	465, 936
Eam1104I	CTCTTC	3 cut(s)	371, 445, 677
Eam1105I	GACNNNNNGTC	1 cut(s)	631
EarI	CTCTTC	3 cut(s)	371, 445, 677
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	3 cut(s)	418, 490, 895
Eco24I	GRGCYC	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	194, 715
Eco53kI	GAGCTC	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	28, 214
EcoT14I	CCWWGG	3 cut(s)	418, 490, 895
EcoT22I	ATGCAT	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	3 cut(s)	418, 490, 895
FaeI	CATG	6 cut(s)	272, 422, 494, 617, 771, 920
FalI	AAGNNNNNCTT	2 cut(s)	857, 889
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	6 cut(s)	268, 418, 490, 613, 767, 916
FauI	CCCGC	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	781, 939
FokI	GGATG	5 cut(s)	122, 719, 752, 761, 946
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	781, 939
FspBI	CTAG	2 cut(s)	189, 315
GluI	GCNGC	2 cut(s)	781, 939
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	467, 496, 938
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	6 cut(s)	272, 422, 494, 617, 771, 920
HindIII	AAGCTT	2 cut(s)	164, 363
HinfI	GANTC	2 cut(s)	8, 596
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	3 cut(s)	194, 715, 842
Hpy188I	TCNGA	2 cut(s)	449, 521
Hpy188III	TCNNGA	4 cut(s)	52, 315, 335, 917
Hpy8I	GTNNAC	3 cut(s)	194, 715, 842
HpyAV	CCTTC	2 cut(s)	81, 364
HpyCH4III	ACNGT	3 cut(s)	463, 584, 839
HpyCH4V	TGCA	8 cut(s)	23, 42, 227, 603, 613, 767, 816, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 879
HpyF3I	CTNAG	4 cut(s)	201, 300, 390, 500
Hsp92II	CATG	6 cut(s)	272, 422, 494, 617, 771, 920
Kpn2I	TCCGGA	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	414, 616, 796
LguI	GCTCTTC	1 cut(s)	371
LweI	GCATC	2 cut(s)	310, 859
MaeI	CTAG	2 cut(s)	189, 315
MaeIII	GTNAC	1 cut(s)	805
MalI	GATC	3 cut(s)	416, 618, 798
MboI	GATC	3 cut(s)	414, 616, 796
MboII	GAAGA	7 cut(s)	40, 110, 237, 388, 462, 694, 740
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	4 cut(s)	134, 209, 837, 844
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	1 cut(s)	688
MluNI	TGGCCA	1 cut(s)	467
Mox20I	TGGCCA	1 cut(s)	467
Mph1103I	ATGCAT	1 cut(s)	615
MroI	TCCGGA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	2 cut(s)	30, 216
MvaI	CCWGG	2 cut(s)	30, 216
MwoI	GCNNNNNNNGC	2 cut(s)	362, 879
NcoI	CCATGG	2 cut(s)	418, 490
NdeII	GATC	3 cut(s)	414, 616, 796
NlaIII	CATG	6 cut(s)	272, 422, 494, 617, 771, 920
NlaIV	GGNNCC	3 cut(s)	416, 446, 487
NmuCI	GTSAC	1 cut(s)	805
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	1 cut(s)	771
PaeR7I	CTCGAG	1 cut(s)	324
PagI	TCATGA	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	2 cut(s)	331, 732
PfeI	GAWTC	2 cut(s)	8, 596
PkrI	GCNGC	2 cut(s)	782, 940
Psp124BI	GAGCTC	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	28, 214
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	2 cut(s)	28, 214
PspN4I	GGNNCC	3 cut(s)	416, 446, 487
PspPI	GGNCC	3 cut(s)	194, 494, 715
PspXI	VCTCGAGB	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	618
SacI	GAGCTC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	2 cut(s)	781, 939
Sau3AI	GATC	3 cut(s)	414, 616, 796
Sau96I	GGNCC	3 cut(s)	194, 494, 715
ScrFI	CCNGG	2 cut(s)	30, 216
SduI	GDGCHC	4 cut(s)	134, 209, 837, 844
SfaNI	GCATC	2 cut(s)	310, 859
Sfr274I	CTCGAG	1 cut(s)	324
SinI	GGWCC	2 cut(s)	194, 715
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	2 cut(s)	324, 347
SmoI	CTYRAG	2 cut(s)	324, 347
Sse9I	AATT	1 cut(s)	688
SsiI	CCGC	4 cut(s)	5, 479, 781, 939
SspMI	CTAG	2 cut(s)	189, 315
SstI	GAGCTC	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	28, 214
StyI	CCWWGG	3 cut(s)	418, 490, 895
TaaI	ACNGT	3 cut(s)	463, 584, 839
TaqI	TCGA	1 cut(s)	325
TasI	AATT	1 cut(s)	688
TauI	GCSGC	2 cut(s)	783, 941
TfiI	GAWTC	2 cut(s)	8, 596
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	4 cut(s)	394, 468, 475, 842
TseFI	GTSAC	1 cut(s)	805
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	2 cut(s)	111, 763
TspRI	CASTG	4 cut(s)	394, 468, 475, 842
Vha464I	CTTAAG	1 cut(s)	347
VneI	GTGCAC	1 cut(s)	840
VpaK11BI	GGWCC	2 cut(s)	194, 715
XapI	RAATTY	1 cut(s)	688
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	1 cut(s)	771
XhoI	CTCGAG	1 cut(s)	324
XspI	CTAG	2 cut(s)	189, 315
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.