Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006077

Physical Location & Seq

Genomic Coordinates Reverse (-)

23965587 .. 23965985

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0252800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCCTTTCAAAGAGTGGATGCTTGAGAGAGCTTGTCATCTCAAGACTGATGTTTTTGACAAGTTGCTTATCACTATTTGGTCTTTATGGAAAAACCGGAATTCAAAGCTGTGGGACAATCACTCAAGACCTGCTGCAGACCTCTTTCTTAGTTCCATGGCTTGCCTTGAAGAATTTCAAAAGGCCCAAATGTCAAATATTGCTAAACAGTCTATGGTTAAAGCACGTTGGACACCGGCGTCGAGCCCCTTCCTAAAGCTCAATGTTGATGGGGCTTTCCTACCATCAGTCAACCATGGTGAAGTTGGGGGCATTATTCGTAATGCAGAGGGACATTTTTGGCTGCCTTTGCACAGCCCGTGCACCATGTATCTTCTGCCAAACAGGTTGAGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

132

Amino Acids

15.22

Weight (kDa)

9.12

Isoelectric Point (pI)

67.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01350
fragaria_vesca	FvH4_6g10411 FvH4_6g10411
malus_domestica	MD01G1079100.v1.1 MD04G1169800.v1.1 MD07G1148000.v1.1
prunus_persica	Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1
pyrus_communis	pycom01g10740 pycom04g15070 pycom07g14690
rosa_chinensis	RchiOBHm_Chr3g0492261
rosa_laevigata	RLG00000022787
rosa_multiflora	Rmu_sc0002530.1_g000012 Rmu_sc0003579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392460
rosa_rugosa	Rorug03G0252800 Rorug03G0252900 Rorug03G0253000
rosa_samantha	Rh3AG302800 Rh3BG338400 Rh3BG338800 Rh3CG336000 Rh3DG338000
rosa_wichuraiana	Rw3G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	100, 173
AcyI	GRCGYC	1 cut(s)	239
AgsI	TTSAA	4 cut(s)	10, 105, 170, 179
AluBI	AGCT	3 cut(s)	32, 109, 259
AluI	AGCT	3 cut(s)	32, 109, 259
Alw21I	GWGCWC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	361
AoxI	GGCC	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	134, 343
ApoI	RAATTY	2 cut(s)	100, 173
Asp700I	GAANNNNTTC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	2 cut(s)	121, 330
BccI	CCATC	2 cut(s)	263, 292
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	2 cut(s)	135, 344
BlsI	GCNGC	2 cut(s)	136, 345
BmgT120I	GGNCC	1 cut(s)	184
BmsI	GCATC	1 cut(s)	9
BpuEI	CTTGAG	3 cut(s)	26, 44, 109
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	156, 295
BsaWI	WCCGGW	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	156, 295
BseGI	GGATG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	121, 330
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	97, 236
BslFI	GGGAC	2 cut(s)	128, 345
BsmFI	GGGAC	2 cut(s)	128, 345
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	248, 365
Bsp19I	CCATGG	2 cut(s)	156, 295
BspANI	GGCC	1 cut(s)	185
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	156, 295
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	156, 295
Bst4CI	ACNGT	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	149
BstDSI	CCRYGG	2 cut(s)	156, 295
BstF5I	GGATG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	121, 330
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	2 cut(s)	156, 295
BtsCI	GGATG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	228
CviAII	CATG	3 cut(s)	157, 296, 367
CviJI	RGCY	9 cut(s)	32, 109, 161, 185, 246, 259, 275, 343, 357
CviKI_1	RGCY	9 cut(s)	32, 109, 161, 185, 246, 259, 275, 343, 357
DdeI	CTNAG	1 cut(s)	149
DrdI	GACNNNNNNGTC	1 cut(s)	238
DseDI	GACNNNNNNGTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	156, 295
Eco24I	GRGCYC	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	156, 295
EcoT38I	GRGCYC	1 cut(s)	248
ErhI	CCWWGG	2 cut(s)	156, 295
FaeI	CATG	3 cut(s)	160, 299, 370
FaiI	YATR	5 cut(s)	88, 158, 215, 297, 368
FaqI	GGGAC	2 cut(s)	128, 345
FatI	CATG	3 cut(s)	156, 295, 366
Fnu4HI	GCNGC	2 cut(s)	135, 344
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	135, 344
GluI	GCNGC	2 cut(s)	135, 344
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	97, 236
HgaI	GACGC	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	160, 299, 370
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	97, 236
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	292, 363
Hpy188III	TCNNGA	2 cut(s)	43, 126
Hpy8I	GTNNAC	2 cut(s)	292, 363
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	4 cut(s)	137, 326, 352, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	1 cut(s)	149
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	160, 299, 370
LpnPI	CCDG	4 cut(s)	110, 144, 249, 370
Lsp1109I	GCAGC	2 cut(s)	121, 330
LweI	GCATC	1 cut(s)	9
MaeII	ACGT	1 cut(s)	226
MboII	GAAGA	2 cut(s)	182, 365
MhlI	GDGCHC	2 cut(s)	248, 365
MluCI	AATT	2 cut(s)	100, 173
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	2 cut(s)	152, 322
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	1 cut(s)	219
MspI	CCGG	2 cut(s)	97, 236
MwoI	GCNNNNNNNGC	1 cut(s)	349
NcoI	CCATGG	2 cut(s)	156, 295
NlaIII	CATG	3 cut(s)	160, 299, 370
PdmI	GAANNNNTTC	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	136, 345
PspPI	GGNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	135, 344
Sau96I	GGNCC	1 cut(s)	184
SduI	GDGCHC	2 cut(s)	248, 365
SetI	ASST	7 cut(s)	34, 111, 133, 144, 229, 261, 389
SfaNI	GCATC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	135
SgrAI	CRCCGGYG	1 cut(s)	235
SmlI	CTYRAG	3 cut(s)	23, 41, 124
SmoI	CTYRAG	3 cut(s)	23, 41, 124
Sse9I	AATT	2 cut(s)	100, 173
SspI	AATATT	1 cut(s)	199
StyI	CCWWGG	2 cut(s)	156, 295
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	242
TasI	AATT	2 cut(s)	100, 173
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseI	GCWGC	2 cut(s)	134, 343
VneI	GTGCAC	1 cut(s)	361
XapI	RAATTY	2 cut(s)	100, 173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.