Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006077

Physical Location & Seq

Genomic Coordinates Reverse (-)

21646267 .. 21652041

Gene Structure 5775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1148000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGACTGAGACTGAGTTCTCCAGAGATGCACGAGCAGTTCGAGAAAGAGTTCTCAAGCGGGCAGAAGAGGCTTTGAAGGGAAGGGGCAAAACCACCGGCAATGAAAAGTTGTATAAAGGGATCCATGGATATACTGATTACAAGGCTGGGTTCCGAAGAGAGCTAACAGTAGCTAGTGAGAAAGCAAGAGGTGCCCATGGGCCTCTCAGGGCCTCTGCTCATATCCGGACTTCTACGAGATTCGATTATCAACCAGACATCTGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGGGATTCCTGCAAGTTTATGCACGATCGTGGGGACTACAAATCTGGCTGGCAGATGGAAAAAGAGTGGGATGAAGCAGAGAAAGCGAGGAAGAGAAACTTAGCTATGGGTGAGGATGATGTGGACGAGTCTGAGGAAGATGATGATGACGAAGATGATGGCTCGTTGCCCTTCGCATGTTTAATCTGCAGGCAACCATTTGTTGATCCTGTCGTAACTAAGTGCAACCATTACTTCTGTGAGCATTGTGCACTGAAGCATCATTCGAAGAACAAGAAATGCTTTGTCTGCGACAAGCCTACTCTTGGCATATTCAACACAGCTCACGAGATACGAAAAAGAATGGCTGCGGAGGGTTACTTTAAAGCTGTAACCCATAGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

229

Amino Acids

26.19

Weight (kDa)

6.56

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	84 - 109	3.2e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	86 - 114	2.1e-06	DUS3L CCCH zinc finger domain
zf_CCCH_4	PF18345	89 - 108	8.2e-06	Zinc finger domain
zf-C3HC4_3	PF13920	159 - 200	5.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	160 - 197	5.1e-06	RING-type zinc-finger
zf-RING_5	PF14634	160 - 199	8.8e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01350
fragaria_vesca	FvH4_6g10411 FvH4_6g10411
malus_domestica	MD01G1079100.v1.1 MD04G1169800.v1.1 MD07G1148000.v1.1
prunus_persica	Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1
pyrus_communis	pycom01g10740 pycom04g15070 pycom07g14690
rosa_chinensis	RchiOBHm_Chr3g0492261
rosa_laevigata	RLG00000022787
rosa_multiflora	Rmu_sc0002530.1_g000012 Rmu_sc0003579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392460
rosa_rugosa	Rorug03G0252800 Rorug03G0252900 Rorug03G0253000
rosa_samantha	Rh3AG302800 Rh3BG338400 Rh3BG338800 Rh3CG336000 Rh3DG338000
rosa_wichuraiana	Rw3G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	2 cut(s)	61, 650
AclWI	GGATC	3 cut(s)	118, 131, 500
AcuI	CTGAAG	1 cut(s)	575
AfiI	CCNNNNNNNGG	1 cut(s)	605
AgsI	TTSAA	2 cut(s)	79, 616
AleI	CACNNNNGTG	1 cut(s)	327
AluBI	AGCT	5 cut(s)	166, 176, 404, 623, 668
AluI	AGCT	5 cut(s)	166, 176, 404, 623, 668
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	2 cut(s)	5, 275
Alw44I	GTGCAC	1 cut(s)	549
AlwI	GGATC	3 cut(s)	118, 131, 500
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	2 cut(s)	203, 213
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	203, 213
AsuHPI	GGTGA	1 cut(s)	422
AsuII	TTCGAA	1 cut(s)	566
BaeGI	GKGCMC	2 cut(s)	199, 553
BamHI	GGATCC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	194
BauI	CACGAG	2 cut(s)	33, 626
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	2 cut(s)	349, 452
BcoDI	GTCTC	2 cut(s)	5, 275
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	487
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
BmgT120I	GGNCC	2 cut(s)	203, 213
BmiI	GGNNCC	3 cut(s)	125, 155, 196
BmsI	GCATC	2 cut(s)	19, 568
BpmI	CTGGAG	1 cut(s)	7
Bpu14I	TTCGAA	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	127, 199
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	127, 199
BseGI	GGATG	2 cut(s)	376, 421
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	3 cut(s)	6, 223, 423
BseNI	ACTGG	1 cut(s)	289
BseSI	GKGCMC	2 cut(s)	199, 553
BseXI	GCAGC	1 cut(s)	634
BseYI	CCCAGC	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	205, 215
BshNI	GGYRCC	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	2 cut(s)	99, 229
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	5, 275
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	205, 215
Bsp119I	TTCGAA	1 cut(s)	566
Bsp1286I	GDGCHC	2 cut(s)	199, 553
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	123, 325, 505
Bsp19I	CCATGG	2 cut(s)	127, 199
BspACI	CCGC	2 cut(s)	61, 650
BspANI	GGCC	2 cut(s)	205, 215
BspCNI	CTCAG	3 cut(s)	7, 222, 424
BspEI	TCCGGA	1 cut(s)	228
BspLI	GGNNCC	3 cut(s)	125, 155, 196
BspMAI	CTGCAG	1 cut(s)	491
BspPI	GGATC	3 cut(s)	118, 131, 500
BspT104I	TTCGAA	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	127, 199
BssMI	GATC	3 cut(s)	123, 325, 505
BssSI	CACGAG	2 cut(s)	33, 626
BssT1I	CCWWGG	2 cut(s)	127, 199
Bst2BI	CACGAG	2 cut(s)	33, 626
Bst4CI	ACNGT	2 cut(s)	172, 293
Bst6I	CTCTTC	3 cut(s)	63, 154, 386
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	566
BstC8I	GCNNGC	3 cut(s)	63, 350, 491
BstDEI	CTNAG	6 cut(s)	9, 15, 209, 400, 432, 519
BstDSI	CCRYGG	2 cut(s)	127, 199
BstF5I	GGATG	2 cut(s)	376, 421
BstKTI	GATC	3 cut(s)	126, 328, 508
BstMAI	GTCTC	2 cut(s)	5, 275
BstMBI	GATC	3 cut(s)	123, 325, 505
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 194, 383, 588
BstNSI	RCATGY	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	2 cut(s)	199, 553
BstV1I	GCAGC	1 cut(s)	634
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	205, 215
BtgI	CCRYGG	2 cut(s)	127, 199
BtsCI	GGATG	2 cut(s)	376, 421
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	3 cut(s)	63, 350, 491
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	203, 213
CviAII	CATG	3 cut(s)	128, 200, 477
DdeI	CTNAG	6 cut(s)	9, 15, 209, 400, 432, 519
DpnI	GATC	3 cut(s)	125, 327, 507
DpnII	GATC	3 cut(s)	123, 325, 505
DraI	TTTAAA	1 cut(s)	664
Eam1104I	CTCTTC	3 cut(s)	63, 154, 386
EarI	CTCTTC	3 cut(s)	63, 154, 386
Eco130I	CCWWGG	2 cut(s)	127, 199
Eco57I	CTGAAG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	127, 199
ErhI	CCWWGG	2 cut(s)	127, 199
FaeI	CATG	3 cut(s)	131, 203, 480
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 566, 598
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	127, 199, 476
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	2 cut(s)	383, 428
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	1 cut(s)	648
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	7
HaeIII	GGCC	2 cut(s)	205, 215
HapII	CCGG	2 cut(s)	99, 229
Hin1II	CATG	3 cut(s)	131, 203, 480
HinfI	GANTC	3 cut(s)	243, 305, 428
HpaII	CCGG	2 cut(s)	99, 229
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	2 cut(s)	424, 551
Hpy188I	TCNGA	2 cut(s)	158, 433
Hpy188III	TCNNGA	4 cut(s)	24, 44, 229, 626
Hpy8I	GTNNAC	2 cut(s)	424, 551
HpyAV	CCTTC	3 cut(s)	73, 78, 481
HpyCH4III	ACNGT	2 cut(s)	172, 293
HpyCH4V	TGCA	6 cut(s)	32, 312, 322, 489, 525, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 194, 383, 588
HpyF3I	CTNAG	6 cut(s)	9, 15, 209, 400, 432, 519
Hsp92II	CATG	3 cut(s)	131, 203, 480
Kpn2I	TCCGGA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	123, 325, 505
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	2 cut(s)	19, 568
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	4 cut(s)	287, 514, 656, 670
MalI	GATC	3 cut(s)	125, 327, 507
MboI	GATC	3 cut(s)	123, 325, 505
MboII	GAAGA	6 cut(s)	80, 171, 403, 449, 464, 580
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	2 cut(s)	199, 553
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	8 cut(s)	64, 185, 216, 226, 381, 406, 427, 646
MroI	TCCGGA	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	2 cut(s)	482, 663
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	2 cut(s)	99, 229
MwoI	GCNNNNNNNGC	4 cut(s)	71, 194, 383, 588
NcoI	CCATGG	2 cut(s)	127, 199
NdeII	GATC	3 cut(s)	123, 325, 505
NlaIII	CATG	3 cut(s)	131, 203, 480
NlaIV	GGNNCC	3 cut(s)	125, 155, 196
NspI	RCATGY	1 cut(s)	480
NspV	TTCGAA	1 cut(s)	566
OliI	CACNNNNGTG	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	243, 305
PkrI	GCNGC	1 cut(s)	649
Ple19I	CGATCG	1 cut(s)	328
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	125, 155, 196
PspPI	GGNCC	2 cut(s)	203, 213
PstI	CTGCAG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	123
PvuI	CGATCG	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	482, 663
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	3 cut(s)	123, 325, 505
Sau96I	GGNCC	2 cut(s)	203, 213
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	2 cut(s)	199, 553
SetI	ASST	6 cut(s)	168, 178, 196, 406, 625, 670
SfaNI	GCATC	2 cut(s)	19, 568
SfcI	CTRYAG	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	566
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SsiI	CCGC	2 cut(s)	61, 650
SspMI	CTAG	1 cut(s)	177
StyI	CCWWGG	2 cut(s)	127, 199
TaaI	ACNGT	2 cut(s)	172, 293
TaqI	TCGA	3 cut(s)	43, 246, 566
TfiI	GAWTC	2 cut(s)	243, 305
Tru1I	TTAA	2 cut(s)	482, 663
Tru9I	TTAA	2 cut(s)	482, 663
TscAI	CASTG	1 cut(s)	558
TseI	GCWGC	1 cut(s)	647
TspDTI	ATGAA	2 cut(s)	120, 387
TspRI	CASTG	1 cut(s)	558
VneI	GTGCAC	1 cut(s)	549
XceI	RCATGY	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.