Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006077

Physical Location & Seq

Genomic Coordinates Reverse (-)

23966145 .. 23966863

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGACAAAAAGAAGATTCATTGGAGAAGTTGGGAACAGTTATGCTTCACCAAGCAGGAAGGAGGCGGAACTAGGTGAAGCCCCATCTTTCTCCTGGAGAAGCATCCTTGAGGCTAGGCCGGTCCTCAAGGCGGGCGTTAGGTGGAGAGTTGGAGATGGAATGAAGATTAATGTGTGGAACGATAATTGGATTCCTAACTGTCCTCAATATTTGATTCGTCGTCCTCATGAAACTATCATTGAGAGGGTAGTAGATCTTATAAACCAACAAGATAGGTCTTGGATCCCAGCCTCTGTACATCATCTCTTCCCCCCAGAAATAGCTTCACAGATTCTAGCCATACCACTGAGTAGACGGACCTCTCATGATAGACTTTGTTGGAAGCCAGAACCGAGAGGTATGTTCACCATCAAAACAGCATATTGGATTGCCCGAGAACATGTATTAGGCAGTGCCTTGGCTACCCCGTCAACTGGAGACCCTTTTCGACCATTATGGAGTAGATTGCATGTGGAAAGCCAAAGTACCGGGGAAAGTTCAAATATGTGTGTGGAGAGCATGTCAAAACTTGCTGCCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

193

Amino Acids

22.03

Weight (kDa)

9.5

Isoelectric Point (pI)

60.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01350
fragaria_vesca	FvH4_6g10411 FvH4_6g10411
malus_domestica	MD01G1079100.v1.1 MD04G1169800.v1.1 MD07G1148000.v1.1
prunus_persica	Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1
pyrus_communis	pycom01g10740 pycom04g15070 pycom07g14690
rosa_chinensis	RchiOBHm_Chr3g0492261
rosa_laevigata	RLG00000022787
rosa_multiflora	Rmu_sc0002530.1_g000012 Rmu_sc0003579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392460
rosa_rugosa	Rorug03G0252800 Rorug03G0252900 Rorug03G0253000
rosa_samantha	Rh3AG302800 Rh3BG338400 Rh3BG338800 Rh3CG336000 Rh3DG338000
rosa_wichuraiana	Rw3G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	352
AciI	CCGC	2 cut(s)	65, 131
AclWI	GGATC	2 cut(s)	277, 290
AfaI	GTAC	2 cut(s)	297, 526
AfiI	CCNNNNNNNGG	2 cut(s)	130, 473
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	1 cut(s)	540
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	277, 290
AlwNI	CAGNNNCTG	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	572
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	121, 357
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	3 cut(s)	39, 86, 397
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	2 cut(s)	121, 357
BamHI	GGATCC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	3 cut(s)	91, 149, 416
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	4 cut(s)	71, 114, 335, 580
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	94, 529
Bme18I	GGWCC	2 cut(s)	121, 357
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	121, 357
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	94, 529
BmsI	GCATC	1 cut(s)	111
BpmI	CTGGAG	2 cut(s)	115, 495
BpuEI	CTTGAG	2 cut(s)	110, 128
BpuMI	CCSGG	1 cut(s)	529
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	456, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 473
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	456, 528
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	130, 473
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	478
BseXI	GCAGC	1 cut(s)	559
BseYI	CCCAGC	1 cut(s)	286
BshFI	GGCC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	119, 528
BslI	CCNNNNNNNGG	2 cut(s)	130, 473
BsmAI	GTCTC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	118
Bso31I	GGTCTC	1 cut(s)	471
BsoBI	CYCGRG	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	253, 282
BspACI	CCGC	2 cut(s)	65, 131
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	339
BspHI	TCATGA	2 cut(s)	226, 364
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	277, 290
BspTNI	GGTCTC	1 cut(s)	471
BsrFI	RCCGGY	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	456, 528
BssMI	GATC	2 cut(s)	253, 282
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	38, 200
Bst6I	CTCTTC	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	256, 285
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	2 cut(s)	253, 282
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	3 cut(s)	443, 512, 562
BstSCI	CCNGG	2 cut(s)	92, 527
BstV1I	GCAGC	1 cut(s)	559
BstX2I	RGATCY	2 cut(s)	253, 282
BstYI	RGATCY	2 cut(s)	253, 282
BsuRI	GGCC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	344, 457
Cac8I	GCNNGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	2 cut(s)	226, 364
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	121, 357
Csp6I	GTAC	2 cut(s)	296, 525
CviAII	CATG	5 cut(s)	227, 365, 440, 509, 559
CviJI	RGCY	9 cut(s)	80, 113, 118, 290, 323, 338, 385, 461, 519
CviKI_1	RGCY	9 cut(s)	80, 113, 118, 290, 323, 338, 385, 461, 519
CviQI	GTAC	2 cut(s)	296, 525
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	2 cut(s)	255, 284
DpnII	GATC	2 cut(s)	253, 282
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	471
Eco47I	GGWCC	2 cut(s)	121, 357
Eco88I	CYCGRG	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	5 cut(s)	230, 368, 443, 512, 562
FatI	CATG	5 cut(s)	226, 364, 439, 508, 558
FauI	CCCGC	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	4 cut(s)	71, 114, 335, 580
GluI	GCNGC	1 cut(s)	573
GsaI	CCCAGC	1 cut(s)	290
GsuI	CTGGAG	2 cut(s)	115, 495
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	2 cut(s)	119, 528
Hin1II	CATG	5 cut(s)	230, 368, 443, 512, 562
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	4 cut(s)	15, 190, 214, 331
HpaII	CCGG	2 cut(s)	119, 528
HphI	GGTGA	3 cut(s)	39, 86, 397
Hpy166II	GTNNAC	3 cut(s)	353, 405, 471
Hpy188III	TCNNGA	2 cut(s)	227, 365
Hpy8I	GTNNAC	3 cut(s)	353, 405, 471
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	38, 200
HpyCH4V	TGCA	1 cut(s)	508
HpyF3I	CTNAG	1 cut(s)	347
Hsp92II	CATG	5 cut(s)	230, 368, 443, 512, 562
Kzo9I	GATC	2 cut(s)	253, 282
LpnPI	CCDG	9 cut(s)	40, 79, 106, 132, 300, 327, 399, 459, 541
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	4 cut(s)	71, 114, 335, 580
MalI	GATC	2 cut(s)	255, 284
MboI	GATC	2 cut(s)	253, 282
MboII	GAAGA	3 cut(s)	24, 175, 298
MflI	RGATCY	2 cut(s)	253, 282
MluCI	AATT	1 cut(s)	184
MmeI	TCCRAC	2 cut(s)	130, 359
MnlI	CCTC	9 cut(s)	55, 103, 134, 213, 234, 237, 301, 370, 389
MseI	TTAA	1 cut(s)	168
MspI	CCGG	2 cut(s)	119, 528
MspR9I	CCNGG	2 cut(s)	94, 529
MvaI	CCWGG	1 cut(s)	94
NciI	CCSGG	1 cut(s)	529
NdeII	GATC	2 cut(s)	253, 282
NlaIII	CATG	5 cut(s)	230, 368, 443, 512, 562
NlaIV	GGNNCC	1 cut(s)	284
NspI	RCATGY	3 cut(s)	443, 512, 562
PagI	TCATGA	2 cut(s)	226, 364
PciI	ACATGT	1 cut(s)	439
PfeI	GAWTC	4 cut(s)	15, 190, 214, 331
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	574
PscI	ACATGT	1 cut(s)	439
PshBI	ATTAAT	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	2 cut(s)	121, 357
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	253, 282
RsaI	GTAC	2 cut(s)	297, 526
RsaNI	GTAC	2 cut(s)	296, 525
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	2 cut(s)	253, 282
Sau96I	GGNCC	2 cut(s)	121, 357
ScrFI	CCNGG	2 cut(s)	94, 529
SetI	ASST	6 cut(s)	76, 143, 278, 325, 362, 400
SfaNI	GCATC	1 cut(s)	111
SinI	GGWCC	2 cut(s)	121, 357
SmlI	CTYRAG	2 cut(s)	107, 125
SmoI	CTYRAG	2 cut(s)	107, 125
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	2 cut(s)	65, 131
SspI	AATATT	1 cut(s)	209
SspMI	CTAG	4 cut(s)	71, 114, 335, 580
StyD4I	CCNGG	2 cut(s)	92, 527
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	38, 200
TaqI	TCGA	1 cut(s)	487
TasI	AATT	1 cut(s)	184
TatI	WGTACW	1 cut(s)	295
TfiI	GAWTC	4 cut(s)	15, 190, 214, 331
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	2 cut(s)	351, 457
TseI	GCWGC	1 cut(s)	572
TspDTI	ATGAA	3 cut(s)	7, 176, 243
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	2 cut(s)	351, 457
VpaK11BI	GGWCC	2 cut(s)	121, 357
VspI	ATTAAT	1 cut(s)	168
XceI	RCATGY	3 cut(s)	443, 512, 562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	352
XspI	CTAG	4 cut(s)	71, 114, 335, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.