Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006077

Physical Location & Seq

Genomic Coordinates Forward (+)

36806884 .. 36808009

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCAGATTCCGGTGGAAATGCAGAACCTGGAGAAGTTTGCAACTTCTTCAGGAAGCCAACAACAAAGAGAAATTTCAGAAAGCGTACTTCTGAAGCTGAGGACAATGAGGAATCAAATTCTGGGAGTGCGGTATTACCAAGTCAAAGAAAAGCTGCAAAGCCTGATGGCAAGTTGTTTTTTTCTAGTGGGCCCTCTAAGAGCTCTGCATCTGATGATGGGAAAGTAATTTTTGAGTTTAAGTCTTCAAAAGAAATCCAAGTTGAACACGATAGCAGAGCAACAGCGACACTGGAGACTGAGACTGAAGTTCTTAAGCAGTCAGAGGAGGCCTTGAAGGGAACCGGGAAAAGCACAGGCAATGAAAAACTGTATAAAGGGCTCCATGGATATACTGATCACAAGGCTGGGTTTCGTAGAGAGCTAACAGTGGCCAGTGAAAAAGCGGGAGGTTCCCATGGGCCTCTCAGGGCTTCTGCACACATCAGGGCTTCCACACGATTTGATTATCAGCCAGATATCTGTAAGGATTACAAAGAGACTGGTTACTGCGGGTATGGAGATTCCTGCAAGTTTATGCATGATCGTGGGGACTACAAGTCTGGCTGGCAGATGGAAAGGGAGTGGGATGAAGCAGAGAAAGTCAGGAAGAGAAATTTAGCTTTGCGTGAGGCTGGTGAGGAAGTTGATGACGACGATGATGACGACGACGATGACGATGACTCGTTACCCTTTGCATGTTTCATCTGCAGACAAACTTTTGTTGATCCTGTTGTAACCAAGTGCAACCACTACTTCTGCGAGCACTGTGCACTAAAGCATCATTCAAAGAACAAGAAGTGCTTTGTGTGCAACAAGCCGACTCTTGGCATTTTCAATACAGCTCATGAAATACGCAAAAGGATAGCTGCAGAGGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

307

Amino Acids

34.4

Weight (kDa)

6.16

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	170 - 195	4.8e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	172 - 200	3.2e-06	DUS3L CCCH zinc finger domain
zf-C3HC4_3	PF13920	246 - 288	2.9e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01350
fragaria_vesca	FvH4_6g10411 FvH4_6g10411
malus_domestica	MD01G1079100.v1.1 MD04G1169800.v1.1 MD07G1148000.v1.1
prunus_persica	Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1
pyrus_communis	pycom01g10740 pycom04g15070 pycom07g14690
rosa_chinensis	RchiOBHm_Chr3g0492261
rosa_laevigata	RLG00000022787
rosa_multiflora	Rmu_sc0002530.1_g000012 Rmu_sc0003579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392460
rosa_rugosa	Rorug03G0252800 Rorug03G0252900 Rorug03G0253000
rosa_samantha	Rh3AG302800 Rh3BG338400 Rh3BG338800 Rh3CG336000 Rh3DG338000
rosa_wichuraiana	Rw3G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	131, 446, 552
AclWI	GGATC	1 cut(s)	761
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	3 cut(s)	73, 118, 655
AcuI	CTGAAG	3 cut(s)	34, 114, 327
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	866
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	5 cut(s)	249, 266, 337, 828, 877
AhdI	GACNNNNNGTC	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	7 cut(s)	98, 155, 204, 424, 662, 884, 908
AluI	AGCT	7 cut(s)	98, 155, 204, 424, 662, 884, 908
Alw21I	GWGCWC	3 cut(s)	206, 807, 814
Alw26I	GTCTC	3 cut(s)	290, 296, 533
Alw44I	GTGCAC	1 cut(s)	810
AlwI	GGATC	1 cut(s)	761
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	4 cut(s)	191, 330, 432, 461
ApaI	GGGCCC	1 cut(s)	195
ApaLI	GTGCAC	1 cut(s)	810
ApeKI	GCWGC	2 cut(s)	155, 908
ApoI	RAATTY	3 cut(s)	73, 118, 655
AspS9I	GGNCC	3 cut(s)	191, 192, 461
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	689
BaeGI	GKGCMC	2 cut(s)	195, 814
BalI	TGGCCA	1 cut(s)	434
BanII	GRGCYC	3 cut(s)	195, 206, 384
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	3 cut(s)	206, 807, 814
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	142, 895
BccI	CCATC	3 cut(s)	161, 212, 607
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	3 cut(s)	290, 296, 533
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	2 cut(s)	748, 909
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	2 cut(s)	156, 909
BlsI	GCNGC	2 cut(s)	157, 910
Bme1390I	CCNGG	2 cut(s)	30, 346
BmeRI	GACNNNNNGTC	1 cut(s)	598
BmgT120I	GGNCC	3 cut(s)	191, 192, 461
BmiI	GGNNCC	4 cut(s)	193, 343, 383, 454
BmrFI	CCNGG	2 cut(s)	30, 346
BmsI	GCATC	2 cut(s)	218, 829
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	51, 314
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	385, 457
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse1I	ACTGG	3 cut(s)	297, 435, 547
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	385, 457
BseGI	GGATG	1 cut(s)	634
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	3 cut(s)	90, 291, 481
BseNI	ACTGG	3 cut(s)	297, 435, 547
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	2 cut(s)	195, 814
BseXI	GCAGC	2 cut(s)	142, 895
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	4 cut(s)	193, 332, 434, 463
BsiHKAI	GWGCWC	3 cut(s)	206, 807, 814
BsiSI	CCGG	2 cut(s)	12, 345
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	1 cut(s)	866
BsmAI	GTCTC	3 cut(s)	290, 296, 533
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	4 cut(s)	193, 332, 434, 463
Bsp120I	GGGCCC	1 cut(s)	191
Bsp1286I	GDGCHC	5 cut(s)	195, 206, 384, 807, 814
Bsp143I	GATC	3 cut(s)	397, 583, 766
Bsp19I	CCATGG	2 cut(s)	385, 457
BspACI	CCGC	3 cut(s)	131, 446, 552
BspANI	GGCC	4 cut(s)	193, 332, 434, 463
BspCNI	CTCAG	3 cut(s)	91, 292, 480
BspHI	TCATGA	1 cut(s)	886
BspLI	GGNNCC	4 cut(s)	193, 343, 383, 454
BspMAI	CTGCAG	2 cut(s)	752, 913
BspPI	GGATC	1 cut(s)	761
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	297, 435, 547
BssECI	CCNNGG	2 cut(s)	385, 457
BssMI	GATC	3 cut(s)	397, 583, 766
BssT1I	CCWWGG	2 cut(s)	385, 457
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	372, 430, 809
Bst6I	CTCTTC	1 cut(s)	644
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	608, 803
BstDEI	CTNAG	4 cut(s)	99, 198, 300, 467
BstDSI	CCRYGG	2 cut(s)	385, 457
BstF5I	GGATG	1 cut(s)	634
BstKTI	GATC	3 cut(s)	400, 586, 769
BstMAI	GTCTC	3 cut(s)	290, 296, 533
BstMBI	GATC	3 cut(s)	397, 583, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	849
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	741
BstSCI	CCNGG	2 cut(s)	28, 344
BstSFI	CTRYAG	2 cut(s)	748, 909
BstSLI	GKGCMC	2 cut(s)	195, 814
BstV1I	GCAGC	2 cut(s)	142, 895
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	193, 332, 434, 463
BtgI	CCRYGG	2 cut(s)	385, 457
BtsCI	GGATG	1 cut(s)	634
BtsIMutI	CAGTG	4 cut(s)	290, 435, 442, 805
Cac8I	GCNNGC	2 cut(s)	608, 803
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	886
Cfr13I	GGNCC	3 cut(s)	191, 192, 461
Csp6I	GTAC	1 cut(s)	87
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	5 cut(s)	386, 458, 581, 738, 887
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	4 cut(s)	99, 198, 300, 467
DpnI	GATC	3 cut(s)	399, 585, 768
DpnII	GATC	3 cut(s)	397, 583, 766
DriI	GACNNNNNGTC	1 cut(s)	598
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	644
Eam1105I	GACNNNNNGTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	644
Ecl136II	GAGCTC	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	385, 457
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	3 cut(s)	195, 206, 384
Eco32I	GATATC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	3 cut(s)	34, 114, 327
EcoICRI	GAGCTC	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	385, 457
EcoT22I	ATGCAT	1 cut(s)	582
EcoT38I	GRGCYC	3 cut(s)	195, 206, 384
ErhI	CCWWGG	2 cut(s)	385, 457
FaeI	CATG	5 cut(s)	389, 461, 584, 741, 890
FaiI	YATR	9 cut(s)	375, 387, 393, 459, 558, 578, 582, 739, 888
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	5 cut(s)	385, 457, 580, 737, 886
FauI	CCCGC	2 cut(s)	439, 545
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	156, 909
FokI	GGATG	1 cut(s)	641
FriOI	GRGCYC	3 cut(s)	195, 206, 384
Fsp4HI	GCNGC	2 cut(s)	156, 909
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	2 cut(s)	156, 909
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	2 cut(s)	51, 314
HaeIII	GGCC	4 cut(s)	193, 332, 434, 463
HapII	CCGG	2 cut(s)	12, 345
Hin1II	CATG	5 cut(s)	389, 461, 584, 741, 890
HinfI	GANTC	5 cut(s)	8, 113, 563, 722, 862
HpaII	CCGG	2 cut(s)	12, 345
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	1 cut(s)	812
Hpy188I	TCNGA	4 cut(s)	80, 94, 214, 325
Hpy188III	TCNNGA	3 cut(s)	52, 646, 887
Hpy8I	GTNNAC	1 cut(s)	812
Hpy99I	CGWCG	3 cut(s)	698, 710, 713
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	3 cut(s)	372, 430, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	849
HpyF3I	CTNAG	4 cut(s)	99, 198, 300, 467
Hsp92II	CATG	5 cut(s)	389, 461, 584, 741, 890
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	397, 583, 766
LmnI	GCTCC	1 cut(s)	387
Lsp1109I	GCAGC	2 cut(s)	142, 895
LweI	GCATC	2 cut(s)	218, 829
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	3 cut(s)	545, 726, 775
MalI	GATC	3 cut(s)	399, 585, 768
MboI	GATC	3 cut(s)	397, 583, 766
MboII	GAAGA	3 cut(s)	40, 237, 661
MhlI	GDGCHC	5 cut(s)	195, 206, 384, 807, 814
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	4 cut(s)	73, 118, 228, 655
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	716, 856
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	2 cut(s)	240, 315
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	434
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	2 cut(s)	12, 345
MspR9I	CCNGG	2 cut(s)	30, 346
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	849
NciI	CCSGG	1 cut(s)	346
NcoI	CCATGG	2 cut(s)	385, 457
NdeII	GATC	3 cut(s)	397, 583, 766
NlaIII	CATG	5 cut(s)	389, 461, 584, 741, 890
NlaIV	GGNNCC	4 cut(s)	193, 343, 383, 454
NsiI	ATGCAT	1 cut(s)	582
NspI	RCATGY	1 cut(s)	741
PagI	TCATGA	1 cut(s)	886
PceI	AGGCCT	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	702, 714
PfeI	GAWTC	3 cut(s)	8, 113, 563
PkrI	GCNGC	2 cut(s)	157, 910
PleI	GAGTC	2 cut(s)	716, 856
PpsI	GAGTC	2 cut(s)	716, 856
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	193, 343, 383, 454
PspOMI	GGGCCC	1 cut(s)	191
PspPI	GGNCC	3 cut(s)	191, 192, 461
PstI	CTGCAG	2 cut(s)	752, 913
PstNI	CAGNNNCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	240, 315
SatI	GCNGC	2 cut(s)	156, 909
Sau3AI	GATC	3 cut(s)	397, 583, 766
Sau96I	GGNCC	3 cut(s)	191, 192, 461
SchI	GAGTC	2 cut(s)	716, 856
ScrFI	CCNGG	2 cut(s)	30, 346
SduI	GDGCHC	5 cut(s)	195, 206, 384, 807, 814
SetI	ASST	9 cut(s)	31, 100, 157, 206, 426, 454, 664, 886, 910
SfaNI	GCATC	2 cut(s)	218, 829
SfcI	CTRYAG	2 cut(s)	748, 909
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	73, 118, 228, 655
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	3 cut(s)	131, 446, 552
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	206
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	28, 344
StyI	CCWWGG	2 cut(s)	385, 457
TaaI	ACNGT	3 cut(s)	372, 430, 809
TasI	AATT	4 cut(s)	73, 118, 228, 655
TfiI	GAWTC	3 cut(s)	8, 113, 563
Tru1I	TTAA	2 cut(s)	240, 315
Tru9I	TTAA	2 cut(s)	240, 315
TscAI	CASTG	4 cut(s)	297, 435, 442, 812
TseI	GCWGC	2 cut(s)	155, 908
TspDTI	ATGAA	4 cut(s)	378, 645, 733, 903
TspRI	CASTG	4 cut(s)	297, 435, 442, 812
Vha464I	CTTAAG	1 cut(s)	314
VneI	GTGCAC	1 cut(s)	810
XapI	RAATTY	3 cut(s)	73, 118, 655
XceI	RCATGY	1 cut(s)	741
XspI	CTAG	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.