Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006077

Physical Location & Seq

Genomic Coordinates Forward (+)

6230985 .. 6233352

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10411.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGGATTCCGGTGGAGATGCAGAACCTGGAGAAGTTTGCAACTTCTTCAGGAAGCCAAAGAAAAATTTTCGAAAGCGTACTGCTGAAGCTGAGGATGATGAGGAATCAAATTCTGGAAGTGCGGTATTACCAAGTCAAAGAAAAGCTGCAAAGCCTGATGGCAAGTTGTTTTTTTCCAGTGGAACCTCTAAGAGCTCTGCATCTGATGACGGGAAAGTAATCCTTGAGTTTAAGTCTTCAAAAGAGATTCAAGTTGAACATGATAGCAGAGCAACGGCAACTCTGGAGACTGAGACTGAGTTCTCTAGAGACGCCCGGGCAGTTCGTGAGAGAGTTCTTAAGCAGTCGGAGGAGGCATTGAAGGGGGGCGGGAAAAGCACAGGCAATGAGAAAGTGTATAAAGGGATCCATGGATATACTGATCACAAGGCTGGGTTCCGTAGAGAGCTGACAGTGGCAAGTGAGAAAGCAGGAGGTTCCCATGGGCCTCTCAGGGCTTCTGCTCACATCAGAGCTTCCACACGATTTGATTATCAGCCAGATATCTGTAAGGATTACAAAGAGACTGGTTACTGTGGGTATGGAGATTCCTGCAAGTTTATGCATGATCGTGGGGACTACAAGTCTGGCTGGCAGATGGAAAGGGAGTGGGATGAAGCAGAGAAAGTCAGGAAGAGAAATTTAGCTTTGCGTGAGGCTGGCGAGGAAGTTGATGACGATGATGGTGACGAAGATGAAGATGATGACTCGTTACCCTTTGCATGTTTCATCTGCAGACAACCTTTTGTTGATCCTGTTGTAACCAAGTGCAGCCACTACTTCTGCGAGCACTGTGCACTAAAGCATCATTCAAAGAACAAGAAGTGCTTTGTGTGCAACAAGCCGACTCTTGGCATTTTCAACACAGCTCATGAGATACGCAAAAGGATTGCCGCGGAGGGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

317

Amino Acids

35.35

Weight (kDa)

6.29

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	179 - 204	5e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	181 - 209	3.4e-06	DUS3L CCCH zinc finger domain
zf-C3HC4_3	PF13920	255 - 297	1.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01350
fragaria_vesca	FvH4_6g10411 FvH4_6g10411
malus_domestica	MD01G1079100.v1.1 MD04G1169800.v1.1 MD07G1148000.v1.1
prunus_persica	Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1 Prupe.6G288300_v2.0.a1
pyrus_communis	pycom01g10740 pycom04g15070 pycom07g14690
rosa_chinensis	RchiOBHm_Chr3g0492261
rosa_laevigata	RLG00000022787
rosa_multiflora	Rmu_sc0002530.1_g000012 Rmu_sc0003579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392460
rosa_rugosa	Rorug03G0252800 Rorug03G0252900 Rorug03G0253000
rosa_samantha	Rh3AG302800 Rh3BG338400 Rh3BG338800 Rh3CG336000 Rh3DG338000
rosa_wichuraiana	Rw3G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	938
AciI	CCGC	5 cut(s)	5, 125, 372, 936, 938
AclWI	GGATC	3 cut(s)	403, 416, 788
AcsI	RAATTY	3 cut(s)	67, 112, 682
AcuI	CTGAAG	2 cut(s)	34, 108
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	2 cut(s)	893, 942
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	6 cut(s)	243, 254, 260, 364, 855, 904
AhdI	GACNNNNNGTC	1 cut(s)	625
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	7 cut(s)	92, 149, 198, 451, 518, 689, 911
AluI	AGCT	7 cut(s)	92, 149, 198, 451, 518, 689, 911
Alw21I	GWGCWC	3 cut(s)	200, 834, 841
Alw26I	GTCTC	4 cut(s)	284, 290, 306, 560
Alw44I	GTGCAC	1 cut(s)	837
AlwI	GGATC	3 cut(s)	403, 416, 788
AlwNI	CAGNNNCTG	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	1 cut(s)	488
ApaLI	GTGCAC	1 cut(s)	837
ApeKI	GCWGC	2 cut(s)	149, 813
ApoI	RAATTY	3 cut(s)	67, 112, 682
AspS9I	GGNCC	1 cut(s)	488
AsuC2I	CCSGG	2 cut(s)	319, 320
AsuHPI	GGTGA	1 cut(s)	740
AsuII	TTCGAA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	841
BamHI	GGATCC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	3 cut(s)	200, 834, 841
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	136, 825
BccI	CCATC	3 cut(s)	155, 634, 719
BceAI	ACGGC	1 cut(s)	294
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	2 cut(s)	319, 320
BcoDI	GTCTC	4 cut(s)	284, 290, 306, 560
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	775
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	3 cut(s)	150, 814, 936
BlsI	GCNGC	3 cut(s)	151, 815, 937
Bme1390I	CCNGG	3 cut(s)	30, 319, 320
BmeRI	GACNNNNNGTC	1 cut(s)	625
BmeT110I	CYCGRG	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	4 cut(s)	187, 410, 440, 481
BmrFI	CCNGG	3 cut(s)	30, 319, 320
BmsI	GCATC	3 cut(s)	10, 212, 856
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	2 cut(s)	51, 308
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	2 cut(s)	319, 320
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	4 cut(s)	318, 412, 484, 936
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	1 cut(s)	932
Bsc4I	CCNNNNNNNGG	2 cut(s)	893, 942
Bse1I	ACTGG	2 cut(s)	180, 574
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	4 cut(s)	318, 412, 484, 936
BseGI	GGATG	2 cut(s)	103, 661
BseLI	CCNNNNNNNGG	2 cut(s)	893, 942
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	4 cut(s)	84, 285, 291, 508
BseNI	ACTGG	2 cut(s)	180, 574
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	841
BseXI	GCAGC	2 cut(s)	136, 825
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	832
Bsh1236I	CGCG	1 cut(s)	938
BshFI	GGCC	1 cut(s)	490
BsiHKAI	GWGCWC	3 cut(s)	200, 834, 841
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	12, 319
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	2 cut(s)	893, 942
BsmAI	GTCTC	4 cut(s)	284, 290, 306, 560
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	318
Bsp119I	TTCGAA	1 cut(s)	73
Bsp1286I	GDGCHC	3 cut(s)	200, 834, 841
Bsp143I	GATC	4 cut(s)	408, 424, 610, 793
Bsp19I	CCATGG	2 cut(s)	412, 484
BspACI	CCGC	5 cut(s)	5, 125, 372, 936, 938
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	4 cut(s)	85, 286, 292, 507
BspFNI	CGCG	1 cut(s)	938
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	4 cut(s)	187, 410, 440, 481
BspMAI	CTGCAG	1 cut(s)	779
BspPI	GGATC	3 cut(s)	403, 416, 788
BspT104I	TTCGAA	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	394
BsrI	ACTGG	2 cut(s)	180, 574
BssECI	CCNNGG	4 cut(s)	318, 412, 484, 936
BssMI	GATC	4 cut(s)	408, 424, 610, 793
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	2 cut(s)	412, 484
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	457, 578, 836
Bst6I	CTCTTC	1 cut(s)	671
BstACI	GRCGYC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	3 cut(s)	635, 703, 830
BstDEI	CTNAG	5 cut(s)	93, 192, 294, 300, 494
BstDSI	CCRYGG	3 cut(s)	412, 484, 936
BstF5I	GGATG	2 cut(s)	103, 661
BstFNI	CGCG	1 cut(s)	938
BstKTI	GATC	4 cut(s)	411, 427, 613, 796
BstMAI	GTCTC	4 cut(s)	284, 290, 306, 560
BstMBI	GATC	4 cut(s)	408, 424, 610, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 876
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	768
BstSCI	CCNGG	3 cut(s)	28, 317, 318
BstSFI	CTRYAG	1 cut(s)	775
BstSLI	GKGCMC	1 cut(s)	841
BstUI	CGCG	1 cut(s)	938
BstV1I	GCAGC	2 cut(s)	136, 825
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	490
BtgI	CCRYGG	3 cut(s)	412, 484, 936
BtsCI	GGATG	2 cut(s)	103, 661
BtsIMutI	CAGTG	3 cut(s)	187, 462, 832
Cac8I	GCNNGC	3 cut(s)	635, 703, 830
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	913
Cfr13I	GGNCC	1 cut(s)	488
Cfr42I	CCGCGG	1 cut(s)	939
Cfr9I	CCCGGG	1 cut(s)	318
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	81
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	6 cut(s)	263, 413, 485, 608, 765, 914
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	5 cut(s)	93, 192, 294, 300, 494
DpnI	GATC	4 cut(s)	410, 426, 612, 795
DpnII	GATC	4 cut(s)	408, 424, 610, 793
DriI	GACNNNNNGTC	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	671
Eam1105I	GACNNNNNGTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	671
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	198
Eco130I	CCWWGG	2 cut(s)	412, 484
Eco24I	GRGCYC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	34, 108
Eco88I	CYCGRG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	412, 484
EcoT22I	ATGCAT	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	2 cut(s)	412, 484
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	6 cut(s)	266, 416, 488, 611, 768, 917
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 854, 886
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	6 cut(s)	262, 412, 484, 607, 764, 913
FauI	CCCGC	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	150, 814, 936
FokI	GGATG	2 cut(s)	110, 668
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	3 cut(s)	150, 814, 936
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	3 cut(s)	150, 814, 936
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	2 cut(s)	51, 308
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	2 cut(s)	12, 319
HgaI	GACGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	6 cut(s)	266, 416, 488, 611, 768, 917
HinfI	GANTC	6 cut(s)	8, 107, 250, 590, 749, 889
HpaII	CCGG	2 cut(s)	12, 319
HphI	GGTGA	1 cut(s)	740
Hpy166II	GTNNAC	1 cut(s)	839
Hpy188I	TCNGA	3 cut(s)	208, 352, 515
Hpy188III	TCNNGA	7 cut(s)	52, 117, 287, 309, 329, 673, 914
Hpy8I	GTNNAC	1 cut(s)	839
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	3 cut(s)	457, 578, 836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 876
HpyF3I	CTNAG	5 cut(s)	93, 192, 294, 300, 494
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	6 cut(s)	266, 416, 488, 611, 768, 917
Ksp22I	TGATCA	1 cut(s)	424
KspI	CCGCGG	1 cut(s)	939
Kzo9I	GATC	4 cut(s)	408, 424, 610, 793
Lsp1109I	GCAGC	2 cut(s)	136, 825
LweI	GCATC	3 cut(s)	10, 212, 856
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	4 cut(s)	572, 728, 753, 802
MalI	GATC	4 cut(s)	410, 426, 612, 795
MboI	GATC	4 cut(s)	408, 424, 610, 793
MboII	GAAGA	5 cut(s)	40, 231, 688, 746, 752
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	3 cut(s)	200, 834, 841
MluCI	AATT	3 cut(s)	67, 112, 682
MlyI	GAGTC	2 cut(s)	743, 883
MmeI	TCCRAC	1 cut(s)	330
Mph1103I	ATGCAT	1 cut(s)	609
MseI	TTAA	2 cut(s)	234, 342
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	938
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	2 cut(s)	12, 319
MspR9I	CCNGG	3 cut(s)	30, 319, 320
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	938
MwoI	GCNNNNNNNGC	2 cut(s)	378, 876
NciI	CCSGG	2 cut(s)	319, 320
NcoI	CCATGG	2 cut(s)	412, 484
NdeII	GATC	4 cut(s)	408, 424, 610, 793
NlaIII	CATG	6 cut(s)	266, 416, 488, 611, 768, 917
NlaIV	GGNNCC	4 cut(s)	187, 410, 440, 481
NmuCI	GTSAC	1 cut(s)	728
NsiI	ATGCAT	1 cut(s)	609
NspI	RCATGY	1 cut(s)	768
NspV	TTCGAA	1 cut(s)	73
PagI	TCATGA	1 cut(s)	913
PfeI	GAWTC	4 cut(s)	8, 107, 250, 590
PkrI	GCNGC	3 cut(s)	151, 815, 937
PleI	GAGTC	2 cut(s)	743, 883
PpsI	GAGTC	2 cut(s)	743, 883
Psp124BI	GAGCTC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	187, 410, 440, 481
PspPI	GGNCC	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	779
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	408
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	1 cut(s)	200
SacII	CCGCGG	1 cut(s)	939
SaqAI	TTAA	2 cut(s)	234, 342
SatI	GCNGC	3 cut(s)	150, 814, 936
Sau3AI	GATC	4 cut(s)	408, 424, 610, 793
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	2 cut(s)	743, 883
ScrFI	CCNGG	3 cut(s)	30, 319, 320
SduI	GDGCHC	3 cut(s)	200, 834, 841
SfaNI	GCATC	3 cut(s)	10, 212, 856
SfcI	CTRYAG	1 cut(s)	775
Sfr303I	CCGCGG	1 cut(s)	939
SfuI	TTCGAA	1 cut(s)	73
SgrBI	CCGCGG	1 cut(s)	939
SmaI	CCCGGG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	2 cut(s)	227, 341
SmoI	CTYRAG	2 cut(s)	227, 341
SrfI	GCCCGGGC	1 cut(s)	320
Sse9I	AATT	3 cut(s)	67, 112, 682
SsiI	CCGC	5 cut(s)	5, 125, 372, 936, 938
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	200
StyD4I	CCNGG	3 cut(s)	28, 317, 318
StyI	CCWWGG	2 cut(s)	412, 484
TaaI	ACNGT	3 cut(s)	457, 578, 836
TaqI	TCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	67, 112, 682
TauI	GCSGC	1 cut(s)	938
TfiI	GAWTC	4 cut(s)	8, 107, 250, 590
Tru1I	TTAA	2 cut(s)	234, 342
Tru9I	TTAA	2 cut(s)	234, 342
TscAI	CASTG	3 cut(s)	187, 462, 839
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	2 cut(s)	149, 813
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	3 cut(s)	672, 753, 760
TspGWI	ACGGA	1 cut(s)	431
TspMI	CCCGGG	1 cut(s)	318
TspRI	CASTG	3 cut(s)	187, 462, 839
Vha464I	CTTAAG	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	837
XapI	RAATTY	3 cut(s)	67, 112, 682
XbaI	TCTAGA	1 cut(s)	308
XceI	RCATGY	1 cut(s)	768
XmaI	CCCGGG	1 cut(s)	318
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.