AT1G01453

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011168
Physical Location & Seq
Reverse (-)
166589 .. 168088
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01453.2

Sequence Viewer

Length: 804 bp
ATGGATCAAAAGCGGCCAACCATCGCCGGCGATGAAGAAATGGCGGCCGAGAAACCGTTACAACCGGCACTCCAAAAACCACCTGGTTTCCGTGATCAACAGAATCAACCATCAGCTCCGCCTTCTGGGACGGCAACGCTTCCACGTCGCCGTCCGAGGCCTATCCATCCGGCCGATAAGAAAAGGCGGTGTAGTTTCTGCCGCGTTTTCTGCTGCTGCGTTTGTATCTTATTCGCCGTGATTCTCCTCCTCATCCTCATCGCCGTCGCTGTTTTCTTCCTTTGGTACAGCCCGAAACTACCCGTCGTCCGCCTAGCCTCGTTCAAAATCAGCAACTTCAACTTTTCCGACGGAAAATCCGACGACGGATGGTCTTTTTTGTCGGCGGATACAACGTCGGTGCTCGATTTTAGAAACCCTAACGGAAAGCTAACGTTTTATTACGGAGATACTGACGTGGCTGTGATTCTCGGAGAGAAAGACTTTGAGACCAACCTAGAGTCAACGAAAGTCAAAGGCTTTATTGAGAAGCCAGGGAATCGGACGGCTGTGATTGTCCCGACGACGGTGAGGAAACGACAGGTGGATGATCCGACGGCAAAGAGGCTACAGGTAGAGCTGAAGAGTAAGAAGCTGTTGGTGACAGTGACAGCTAAGACGAAGGTAGGATTGGCTGTGGGCAGTCGTAAGATTGTTACTGTGGGCGTTAGTCTCAGATGCGGAGGCGTTATATTACAGACGCTTGACTCAAAAATGGCCCAATGCACCATCAAAATGCTCAAATGGATCAAATTGCGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

267

Amino Acids

29.66

Weight (kDa)

9.86

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AciI CCGC 9 cut(s) 13, 44, 119, 187, 202, 310, 386, 720, 796
AclI AACGTT 1 cut(s) 434
AclWI GGATC 3 cut(s) 12, 584, 794
AcoI YGGCCR 3 cut(s) 14, 45, 171
AcuI CTGAAG 1 cut(s) 641
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 2 cut(s) 125, 565
AgsI TTSAA 2 cut(s) 325, 340
AhdI GACNNNNNGTC 1 cut(s) 370
AjiI CACGTC 2 cut(s) 146, 457
AjnI CCWGG 2 cut(s) 82, 532
AjuI GAANNNNNNNTTGG 2 cut(s) 653, 685
AluBI AGCT 5 cut(s) 116, 430, 619, 634, 653
AluI AGCT 5 cut(s) 116, 430, 619, 634, 653
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 482, 716
AlwI GGATC 3 cut(s) 12, 584, 794
AoxI GGCC 5 cut(s) 14, 45, 158, 171, 756
ApeKI GCWGC 2 cut(s) 213, 216
AspS9I GGNCC 1 cut(s) 757
AsuHPI GGTGA 2 cut(s) 580, 652
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 200, 203
BccI CCATC 5 cut(s) 29, 118, 174, 363, 776
BceAI ACGGC 6 cut(s) 135, 147, 221, 248, 561, 612
BciT130I CCWGG 2 cut(s) 84, 534
BciVI GTATCC 1 cut(s) 382
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 482, 716
BfaI CTAG 2 cut(s) 314, 497
BfmI CTRYAG 1 cut(s) 608
BfuI GTATCC 1 cut(s) 382
BisI GCNGC 5 cut(s) 14, 45, 202, 214, 217
BlsI GCNGC 5 cut(s) 15, 46, 203, 215, 218
Bme1390I CCNGG 2 cut(s) 84, 534
BmeRI GACNNNNNGTC 1 cut(s) 370
BmgBI CACGTC 2 cut(s) 146, 457
BmgT120I GGNCC 1 cut(s) 757
BmrFI CCNGG 2 cut(s) 84, 534
BmsI GCATC 1 cut(s) 707
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 155, 533
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 565
Bse118I RCCGGY 2 cut(s) 26, 64
BseBI CCWGG 2 cut(s) 84, 534
BseDI CCNNGG 2 cut(s) 155, 533
BseGI GGATG 4 cut(s) 166, 252, 374, 592
BseLI CCNNNNNNNGG 2 cut(s) 125, 565
BseMII CTCAG 1 cut(s) 727
BseRI GAGGAG 2 cut(s) 236, 239
BseX3I CGGCCG 2 cut(s) 45, 171
BseXI GCAGC 2 cut(s) 200, 203
Bsh1236I CGCG 1 cut(s) 204
Bsh1285I CGRYCG 2 cut(s) 48, 174
BshFI GGCC 5 cut(s) 16, 47, 160, 173, 758
BsiEI CGRYCG 2 cut(s) 48, 174
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 3 cut(s) 27, 65, 170
BslFI GGGAC 2 cut(s) 142, 542
BslI CCNNNNNNNGG 2 cut(s) 125, 565
BsmAI GTCTC 2 cut(s) 482, 716
BsmFI GGGAC 2 cut(s) 142, 542
BsnI GGCC 5 cut(s) 16, 47, 160, 173, 758
Bso31I GGTCTC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 4 cut(s) 4, 94, 589, 786
BspACI CCGC 9 cut(s) 13, 44, 119, 187, 202, 310, 386, 720, 796
BspANI GGCC 5 cut(s) 16, 47, 160, 173, 758
BspCNI CTCAG 1 cut(s) 726
BspFNI CGCG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 800
BspPI GGATC 3 cut(s) 12, 584, 794
BspTNI GGTCTC 1 cut(s) 482
BsrFI RCCGGY 2 cut(s) 26, 64
BssAI RCCGGY 2 cut(s) 26, 64
BssECI CCNNGG 2 cut(s) 155, 533
BssMI GATC 4 cut(s) 4, 94, 589, 786
Bst2UI CCWGG 2 cut(s) 84, 534
Bst4CI ACNGT 4 cut(s) 57, 568, 646, 700
Bst6I CTCTTC 1 cut(s) 617
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 654, 713
BstF5I GGATG 4 cut(s) 166, 252, 374, 592
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 4 cut(s) 7, 97, 592, 789
BstMAI GTCTC 2 cut(s) 482, 716
BstMBI GATC 4 cut(s) 4, 94, 589, 786
BstMCI CGRYCG 2 cut(s) 48, 174
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 2 cut(s) 84, 534
BstSCI CCNGG 2 cut(s) 82, 532
BstSFI CTRYAG 1 cut(s) 608
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 200, 203
BstZI CGGCCG 2 cut(s) 45, 171
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 5 cut(s) 16, 47, 160, 173, 758
BtgZI GCGATG 3 cut(s) 7, 45, 244
BtrI CACGTC 2 cut(s) 146, 457
BtsCI GGATG 4 cut(s) 166, 252, 374, 592
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 28
CciI TCATGA 1 cut(s) 800
Cfr10I RCCGGY 2 cut(s) 26, 64
Cfr13I GGNCC 1 cut(s) 757
CseI GACGC 1 cut(s) 748
CsiI ACCWGGT 1 cut(s) 82
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 801
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 654, 713
DpnI GATC 4 cut(s) 6, 96, 591, 788
DpnII GATC 4 cut(s) 4, 94, 589, 786
DriI GACNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 3 cut(s) 14, 45, 171
EagI CGGCCG 2 cut(s) 45, 171
Eam1104I CTCTTC 1 cut(s) 617
Eam1105I GACNNNNNGTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 617
EciI GGCGGA 3 cut(s) 108, 299, 401
EclXI CGGCCG 2 cut(s) 45, 171
Eco147I AGGCCT 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 482
Eco52I CGGCCG 2 cut(s) 45, 171
Eco57I CTGAAG 1 cut(s) 641
EcoRII CCWGG 2 cut(s) 82, 532
FaeI CATG 1 cut(s) 804
FaiI YATR 2 cut(s) 731, 802
FaqI GGGAC 2 cut(s) 142, 542
FatI CATG 1 cut(s) 800
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 5 cut(s) 14, 45, 202, 214, 217
FokI GGATG 4 cut(s) 153, 239, 381, 599
Fsp4HI GCNGC 5 cut(s) 14, 45, 202, 214, 217
FspBI CTAG 2 cut(s) 314, 497
GluI GCNGC 5 cut(s) 14, 45, 202, 214, 217
HaeIII GGCC 5 cut(s) 16, 47, 160, 173, 758
HapII CCGG 3 cut(s) 27, 65, 170
HgaI GACGC 1 cut(s) 748
Hin1II CATG 1 cut(s) 804
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 6 cut(s) 103, 241, 466, 500, 538, 746
HpaII CCGG 3 cut(s) 27, 65, 170
HphI GGTGA 2 cut(s) 580, 652
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 7 cut(s) 156, 349, 361, 473, 543, 594, 716
Hpy188III TCNNGA 2 cut(s) 559, 801
Hpy8I GTNNAC 1 cut(s) 504
HpyAV CCTTC 2 cut(s) 132, 655
HpyCH4III ACNGT 4 cut(s) 57, 568, 646, 700
HpyCH4IV ACGT 4 cut(s) 145, 395, 434, 456
HpyCH4V TGCA 1 cut(s) 765
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 2 cut(s) 654, 713
HpySE526I ACGT 4 cut(s) 145, 395, 434, 456
Hsp92II CATG 1 cut(s) 804
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 4, 94, 589, 786
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 2 cut(s) 200, 203
LweI GCATC 1 cut(s) 707
MabI ACCWGGT 1 cut(s) 82
MaeI CTAG 2 cut(s) 314, 497
MaeII ACGT 4 cut(s) 145, 395, 434, 456
MaeIII GTNAC 4 cut(s) 57, 640, 646, 694
MalI GATC 4 cut(s) 6, 96, 591, 788
MboI GATC 4 cut(s) 4, 94, 589, 786
MboII GAAGA 3 cut(s) 47, 268, 634
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 1 cut(s) 791
MlyI GAGTC 2 cut(s) 509, 740
MmeI TCCRAC 3 cut(s) 372, 384, 617
MnlI CCTC 8 cut(s) 150, 257, 260, 266, 328, 564, 597, 716
MreI CGCCGGCG 1 cut(s) 26
MroNI GCCGGC 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 773
MspI CCGG 3 cut(s) 27, 65, 170
MspR9I CCNGG 2 cut(s) 84, 534
MvaI CCWGG 2 cut(s) 84, 534
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 210
NaeI GCCGGC 1 cut(s) 28
NdeII GATC 4 cut(s) 4, 94, 589, 786
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 1 cut(s) 804
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 2 cut(s) 640, 646
PagI TCATGA 1 cut(s) 800
PceI AGGCCT 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 4 cut(s) 103, 241, 466, 538
PkrI GCNGC 5 cut(s) 15, 46, 203, 215, 218
PleI GAGTC 2 cut(s) 508, 740
PpsI GAGTC 2 cut(s) 508, 740
Psp1406I AACGTT 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 82, 532
PspGI CCWGG 2 cut(s) 82, 532
PspPI GGNCC 1 cut(s) 757
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 773
SatI GCNGC 5 cut(s) 14, 45, 202, 214, 217
Sau3AI GATC 4 cut(s) 4, 94, 589, 786
Sau96I GGNCC 1 cut(s) 757
SchI GAGTC 2 cut(s) 509, 740
ScrFI CCNGG 2 cut(s) 84, 534
SduI GDGCHC 1 cut(s) 405
SexAI ACCWGGT 1 cut(s) 82
SfaNI GCATC 1 cut(s) 707
SfcI CTRYAG 1 cut(s) 608
SgrAI CRCCGGYG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 773
Sse9I AATT 1 cut(s) 791
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 9 cut(s) 13, 44, 119, 187, 202, 310, 386, 720, 796
SspMI CTAG 2 cut(s) 314, 497
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 82, 532
TaaI ACNGT 4 cut(s) 57, 568, 646, 700
TaiI ACGT 4 cut(s) 148, 398, 437, 459
TaqI TCGA 1 cut(s) 405
TasI AATT 1 cut(s) 791
TauI GCSGC 3 cut(s) 16, 47, 204
TfiI GAWTC 4 cut(s) 103, 241, 466, 538
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 2 cut(s) 640, 646
TseI GCWGC 2 cut(s) 213, 216
Tsp45I GTSAC 2 cut(s) 640, 646
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 5 cut(s) 80, 366, 381, 438, 459
TspRI CASTG 1 cut(s) 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XspI CTAG 2 cut(s) 314, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.